RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 M0R135 149 aa5.93□□□□□ -1.46
VPS4A-203ENST00000564399 GLCEO94923 617 aa5.93□□□□□ -1.46
VPS4A-203ENST00000564399 CLIC3O95833 236 aa5.93□□□□□ -1.46
VPS4A-203ENST00000564399 NHLRC4P0CG21 123 aaPredicted RBP5.93□□□□□ -1.46
VPS4A-203ENST00000564399 CRABP1P29762 137 aa5.93□□□□□ -1.46
VPS4A-203ENST00000564399 SDHAP31040 664 aa5.93□□□□□ -1.46
VPS4A-203ENST00000564399 MDH1P40925 334 aaKnown RBP5.93□□□□□ -1.46
VPS4A-203ENST00000564399 GPR4P46093 362 aa5.93□□□□□ -1.46
VPS4A-203ENST00000564399 TGM4P49221 684 aa5.93□□□□□ -1.46
VPS4A-203ENST00000564399 IDH3AP50213 366 aa5.93□□□□□ -1.46
VPS4A-203ENST00000564399 SLC18A1P54219 525 aa5.93□□□□□ -1.46
VPS4A-203ENST00000564399 LGALS4P56470 323 aa5.93□□□□□ -1.46
VPS4A-203ENST00000564399 ZNF92Q03936 586 aa5.93□□□□□ -1.46
VPS4A-203ENST00000564399 TRAM2Q15035 370 aa5.93□□□□□ -1.46
VPS4A-203ENST00000564399 CNN3Q15417 329 aaKnown RBP5.93□□□□□ -1.46
VPS4A-203ENST00000564399 PLA1AQ53H76 456 aa5.93□□□□□ -1.46
VPS4A-203ENST00000564399 RABL3Q5HYI8 236 aa5.93□□□□□ -1.46
VPS4A-203ENST00000564399 GPR139Q6DWJ6 353 aa5.93□□□□□ -1.46
VPS4A-203ENST00000564399 DNM1P34Q6PK57 102 aa5.93□□□□□ -1.46
VPS4A-203ENST00000564399 ZNF730Q6ZMV8 503 aa5.93□□□□□ -1.46
VPS4A-203ENST00000564399 CFAP77Q6ZQR2 320 aa5.93□□□□□ -1.46
VPS4A-203ENST00000564399 CCDC121Q6ZUS5 278 aa5.93□□□□□ -1.46
VPS4A-203ENST00000564399 PTCHD4Q6ZW05 846 aa5.93□□□□□ -1.46
VPS4A-203ENST00000564399 RRM2BQ7LG56 351 aa5.93□□□□□ -1.46
VPS4A-203ENST00000564399 FAM122BQ7Z309 247 aa5.93□□□□□ -1.46
VPS4A-203ENST00000564399 TSEN54Q7Z6J9 526 aaKnown RBP5.93□□□□□ -1.46
VPS4A-203ENST00000564399 Q8N2B8 174 aa5.93□□□□□ -1.46
VPS4A-203ENST00000564399 OR5AU1Q8NGC0 362 aa5.93□□□□□ -1.46
VPS4A-203ENST00000564399 OR56B2PQ8NGI1 322 aa5.93□□□□□ -1.46
VPS4A-203ENST00000564399 ZNF799Q96GE5 643 aa5.93□□□□□ -1.46
VPS4A-203ENST00000564399 AJUBAQ96IF1 538 aa5.93□□□□□ -1.46
VPS4A-203ENST00000564399 TPD52L3Q96J77 140 aa5.93□□□□□ -1.46
VPS4A-203ENST00000564399 PRRC1Q96M27 445 aa5.93□□□□□ -1.46
VPS4A-203ENST00000564399 TSSK2Q96PF2 358 aa5.93□□□□□ -1.46
VPS4A-203ENST00000564399 EBF4Q9BQW3 602 aa5.93□□□□□ -1.46
VPS4A-203ENST00000564399 CHID1Q9BWS9 393 aa5.93□□□□□ -1.46
VPS4A-203ENST00000564399 CDCA4Q9BXL8 241 aa5.93□□□□□ -1.46
VPS4A-203ENST00000564399 SRA1Q9HD15 236 aaKnown RBP5.93□□□□□ -1.46
VPS4A-203ENST00000564399 SNTG1Q9NSN8 517 aa5.93□□□□□ -1.46
VPS4A-203ENST00000564399 NKIRAS1Q9NYS0 192 aa5.93□□□□□ -1.46
VPS4A-203ENST00000564399 VSX1Q9NZR4 365 aaPredicted RBP5.93□□□□□ -1.46
VPS4A-203ENST00000564399 SLC25A10Q9UBX3 287 aaPredicted RBP5.93□□□□□ -1.46
VPS4A-203ENST00000564399 ZNF391Q9UJN7 358 aa5.93□□□□□ -1.46
VPS4A-203ENST00000564399 A4GNTQ9UNA3 340 aa5.93□□□□□ -1.46
VPS4A-203ENST00000564399 N6AMT1Q9Y5N5 214 aa5.93□□□□□ -1.46
VPS4A-203ENST00000564399 IER3IP1Q9Y5U9 82 aa5.93□□□□□ -1.46
VPS4A-203ENST00000564399 EPPK1P58107 5090 aaKnown RBP5.92□□□□□ -1.46
VPS4A-203ENST00000564399 TCRBV4S1A1TA0A5B7 111 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 MEGF11A6BM72 1044 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 ANKRD30BLA7E2S9 258 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP5.92□□□□□ -1.46
VPS4A-203ENST00000564399 CDC42EP2O14613 210 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 NDUFB2O95178 105 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 HLA-DQA2P01906 255 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 ALDOBP05062 364 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 TROVE2P10155 538 aaKnown RBP eCLIP5.92□□□□□ -1.46
VPS4A-203ENST00000564399 AMY2BP19961 511 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 LMO1P25800 156 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 CDKN2AP42771 156 aaKnown RBP5.92□□□□□ -1.46
VPS4A-203ENST00000564399 VDAC2P45880 294 aaPredicted RBP5.92□□□□□ -1.46
VPS4A-203ENST00000564399 RAB13P51153 203 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 CSNK2BP67870 215 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 CD83Q01151 205 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 EGFEM1PQ0D2K5 195 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 RFX4Q33E94 735 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 TMEM95Q3KNT9 176 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 SNAI3Q3KNW1 292 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 KRTAP27-1Q3LI81 207 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 SLC36A3Q495N2 470 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 LRRC23Q53EV4 343 aaPredicted RBP5.92□□□□□ -1.46
VPS4A-203ENST00000564399 CYBRD1Q53TN4 286 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 DMRTC1Q5HYR2 192 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 KHDC1LQ5JSQ8 128 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 HCP5Q6MZN7 132 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 SLC18B1Q6NT16 456 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 TBPL2Q6SJ96 375 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 WDR82Q6UXN9 313 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 CPLX4Q7Z7G2 160 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 ADCK1Q86TW2 530 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 TMEM219Q86XT9 240 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 C11orf53Q8IXP5 236 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 RNF113BQ8IZP6 322 aaKnown RBP5.92□□□□□ -1.46
VPS4A-203ENST00000564399 FAM185AQ8N0U4 392 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 DPP10Q8N608 796 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 FAM156AQ8NDB6 213 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 OR1M1Q8NGA1 313 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 PIFOQ8TCI5 191 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 WIPF2Q8TF74 440 aaPredicted RBP5.92□□□□□ -1.46
VPS4A-203ENST00000564399 SPTSSAQ969W0 71 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 C12orf43Q96C57 262 aaKnown RBP5.92□□□□□ -1.46
VPS4A-203ENST00000564399 MED30Q96HR3 178 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 CCDC28BQ9BUN5 200 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 GPR61Q9BZJ8 451 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 WNT10AQ9GZT5 417 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 NSRP1Q9H0G5 558 aaKnown RBP5.92□□□□□ -1.46
VPS4A-203ENST00000564399 MUC13Q9H3R2 512 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 RABEP2Q9H5N1 569 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 HEXA-AS1Q9H8Q6 139 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 NRIP3Q9NQ35 241 aa5.92□□□□□ -1.46
VPS4A-203ENST00000564399 ABCB10Q9NRK6 738 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms