RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 ZNF511Q8NB15 262 aa13.9□□□□□ -0.18
CLN3-211ENST00000564091 SLC37A3Q8NCC5 494 aa13.9□□□□□ -0.18
CLN3-211ENST00000564091 OR9Q2Q8NGE9 314 aa13.9□□□□□ -0.18
CLN3-211ENST00000564091 OR52L1Q8NGH7 329 aa13.9□□□□□ -0.18
CLN3-211ENST00000564091 OR4C15Q8NGM1 316 aa13.9□□□□□ -0.18
CLN3-211ENST00000564091 SLAMF6Q96DU3 332 aa13.9□□□□□ -0.18
CLN3-211ENST00000564091 SEH1LQ96EE3 360 aa13.9□□□□□ -0.18
CLN3-211ENST00000564091 KCNJ15Q99712 375 aa13.9□□□□□ -0.18
CLN3-211ENST00000564091 ELAC2Q9BQ52 826 aaKnown RBP13.9□□□□□ -0.18
CLN3-211ENST00000564091 SEMA6AQ9H2E6 1030 aa13.9□□□□□ -0.18
CLN3-211ENST00000564091 C14orf119Q9NWQ9 140 aa13.9□□□□□ -0.18
CLN3-211ENST00000564091 RPUSD1Q9UJJ7 312 aaKnown RBP13.9□□□□□ -0.18
CLN3-211ENST00000564091 COMMD3-BMI1R4GMX3 469 aa13.9□□□□□ -0.18
CLN3-211ENST00000564091 ANKRD30BLA7E2S9 258 aa13.89□□□□□ -0.19
CLN3-211ENST00000564091 ZNF593O00488 134 aaPredicted RBP13.89□□□□□ -0.19
CLN3-211ENST00000564091 CLPXO76031 633 aa13.89□□□□□ -0.19
CLN3-211ENST00000564091 GYPBP06028 91 aa13.89□□□□□ -0.19
CLN3-211ENST00000564091 PROK1P58294 105 aa13.89□□□□□ -0.19
CLN3-211ENST00000564091 RPL15P61313 204 aaKnown RBP13.89□□□□□ -0.19
CLN3-211ENST00000564091 CSNK2BP67870 215 aa13.89□□□□□ -0.19
CLN3-211ENST00000564091 MZT1Q08AG7 82 aa13.89□□□□□ -0.19
CLN3-211ENST00000564091 PCK2Q16822 640 aa13.89□□□□□ -0.19
CLN3-211ENST00000564091 CDONQ4KMG0 1287 aa13.89□□□□□ -0.19
CLN3-211ENST00000564091 VMO1Q7Z5L0 202 aa13.89□□□□□ -0.19
CLN3-211ENST00000564091 OR8D4Q8NGM9 314 aa13.89□□□□□ -0.19
CLN3-211ENST00000564091 OR8S1Q8NH09 359 aa13.89□□□□□ -0.19
CLN3-211ENST00000564091 LRRC29Q8WV35 223 aa13.89□□□□□ -0.19
CLN3-211ENST00000564091 UBE2FQ969M7 185 aa13.89□□□□□ -0.19
CLN3-211ENST00000564091 NSMCE2Q96MF7 247 aa13.89□□□□□ -0.19
CLN3-211ENST00000564091 PKP2Q99959 881 aa13.89□□□□□ -0.19
CLN3-211ENST00000564091 PPP1R3EQ9H7J1 279 aa13.89□□□□□ -0.19
CLN3-211ENST00000564091 IL1RAPQ9NPH3 570 aa13.89□□□□□ -0.19
CLN3-211ENST00000564091 ONECUT1Q9UBC0 465 aa13.89□□□□□ -0.19
CLN3-211ENST00000564091 KAAG1Q9UBP8 84 aa13.89□□□□□ -0.19
CLN3-211ENST00000564091 DNAJB11Q9UBS4 358 aa13.89□□□□□ -0.19
CLN3-211ENST00000564091 MAGEL2Q9UJ55 1249 aa13.89□□□□□ -0.19
CLN3-211ENST00000564091 TBX1O43435 398 aa13.88□□□□□ -0.19
CLN3-211ENST00000564091 CLUP10909 449 aa13.88□□□□□ -0.19
CLN3-211ENST00000564091 PRDX6P30041 224 aa13.88□□□□□ -0.19
CLN3-211ENST00000564091 ENTPD1P49961 510 aa13.88□□□□□ -0.19
CLN3-211ENST00000564091 DLX1P56177 255 aa13.88□□□□□ -0.19
CLN3-211ENST00000564091 TAF9Q16594 264 aa13.88□□□□□ -0.19
CLN3-211ENST00000564091 MICBQ29980 383 aa13.88□□□□□ -0.19
CLN3-211ENST00000564091 WDR38Q5JTN6 314 aa13.88□□□□□ -0.19
CLN3-211ENST00000564091 Q6ZSV7 163 aa13.88□□□□□ -0.19
CLN3-211ENST00000564091 SLC16A9Q7RTY1 509 aa13.88□□□□□ -0.19
CLN3-211ENST00000564091 FAM216BQ8N7L0 139 aa13.88□□□□□ -0.19
CLN3-211ENST00000564091 OR1M1Q8NGA1 313 aa13.88□□□□□ -0.19
CLN3-211ENST00000564091 SPSB4Q96A44 273 aa13.88□□□□□ -0.19
CLN3-211ENST00000564091 SGK3Q96BR1 496 aa13.88□□□□□ -0.19
CLN3-211ENST00000564091 BTBD10Q9BSF8 475 aa13.88□□□□□ -0.19
CLN3-211ENST00000564091 OPA3Q9H6K4 179 aa13.88□□□□□ -0.19
CLN3-211ENST00000564091 TCF7L1Q9HCS4 588 aa13.88□□□□□ -0.19
CLN3-211ENST00000564091 SIRT7Q9NRC8 400 aa13.88□□□□□ -0.19
CLN3-211ENST00000564091 FAM96BQ9Y3D0 163 aa13.88□□□□□ -0.19
CLN3-211ENST00000564091 KPTNQ9Y664 436 aa13.88□□□□□ -0.19
CLN3-211ENST00000564091 A0A0G2JK05 382 aa13.87□□□□□ -0.19
CLN3-211ENST00000564091 A0A1W2PRD5 423 aa13.87□□□□□ -0.19
CLN3-211ENST00000564091 A0A1W2PRF3 423 aa13.87□□□□□ -0.19
CLN3-211ENST00000564091 A0A1W2PRM7 423 aa13.87□□□□□ -0.19
CLN3-211ENST00000564091 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.87□□□□□ -0.19
CLN3-211ENST00000564091 ARPC2O15144 300 aa13.87□□□□□ -0.19
CLN3-211ENST00000564091 XRCC2O43543 280 aa13.87□□□□□ -0.19
CLN3-211ENST00000564091 GASTP01350 101 aa13.87□□□□□ -0.19
CLN3-211ENST00000564091 ANXA2P07355 339 aaKnown RBP13.87□□□□□ -0.19
CLN3-211ENST00000564091 HSD17B1P14061 328 aa13.87□□□□□ -0.19
CLN3-211ENST00000564091 FMO3P31513 532 aa13.87□□□□□ -0.19
CLN3-211ENST00000564091 GRK5P34947 590 aa13.87□□□□□ -0.19
CLN3-211ENST00000564091 DDOSTP39656 456 aa13.87□□□□□ -0.19
CLN3-211ENST00000564091 GMFBP60983 142 aa13.87□□□□□ -0.19
CLN3-211ENST00000564091 FAM3AP98173 230 aa13.87□□□□□ -0.19
CLN3-211ENST00000564091 IKZF1Q13422 519 aa13.87□□□□□ -0.19
CLN3-211ENST00000564091 CRMP1Q14194 572 aa13.87□□□□□ -0.19
CLN3-211ENST00000564091 C11orf91Q3C1V1 193 aa13.87□□□□□ -0.19
CLN3-211ENST00000564091 DPY19L4Q7Z388 723 aa13.87□□□□□ -0.19
CLN3-211ENST00000564091 C1QL4Q86Z23 238 aa13.87□□□□□ -0.19
CLN3-211ENST00000564091 ZSCAN4Q8NAM6 433 aaPredicted RBP13.87□□□□□ -0.19
CLN3-211ENST00000564091 LY6G5BQ8NDX9 201 aa13.87□□□□□ -0.19
CLN3-211ENST00000564091 CDRT15Q96T59 188 aa13.87□□□□□ -0.19
CLN3-211ENST00000564091 TSSK6Q9BXA6 273 aa13.87□□□□□ -0.19
CLN3-211ENST00000564091 DPAGT1Q9H3H5 408 aa13.87□□□□□ -0.19
CLN3-211ENST00000564091 RNPEPL1Q9HAU8 725 aa13.87□□□□□ -0.19
CLN3-211ENST00000564091 IL20Q9NYY1 176 aa13.87□□□□□ -0.19
CLN3-211ENST00000564091 CD300AQ9UGN4 299 aa13.87□□□□□ -0.19
CLN3-211ENST00000564091 LYVE1Q9Y5Y7 322 aa13.87□□□□□ -0.19
CLN3-211ENST00000564091 A0A1B0GVI7 797 aa13.86□□□□□ -0.19
CLN3-211ENST00000564091 DHRS12A0PJE2 317 aa13.86□□□□□ -0.19
CLN3-211ENST00000564091 ZNF878C9JN71 531 aa13.86□□□□□ -0.19
CLN3-211ENST00000564091 TNFRSF11BO00300 401 aa13.86□□□□□ -0.19
CLN3-211ENST00000564091 ACOT8O14734 319 aa13.86□□□□□ -0.19
CLN3-211ENST00000564091 CDIPTO14735 213 aa13.86□□□□□ -0.19
CLN3-211ENST00000564091 TSPAN15O95858 294 aa13.86□□□□□ -0.19
CLN3-211ENST00000564091 MUC1P15941 1255 aaPredicted RBP13.86□□□□□ -0.19
CLN3-211ENST00000564091 SPI1P17947 270 aa13.86□□□□□ -0.19
CLN3-211ENST00000564091 AMY2BP19961 511 aa13.86□□□□□ -0.19
CLN3-211ENST00000564091 CX3CR1P49238 355 aa13.86□□□□□ -0.19
CLN3-211ENST00000564091 HMGA2P52926 109 aa13.86□□□□□ -0.19
CLN3-211ENST00000564091 PPP1R8Q12972 351 aaKnown RBP13.86□□□□□ -0.19
CLN3-211ENST00000564091 TIGD6Q17RP2 521 aa13.86□□□□□ -0.19
CLN3-211ENST00000564091 ZNF770Q6IQ21 691 aaPredicted RBP13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms