RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 BRICD5Q6PL45 260 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 TMEM171Q8WVE6 324 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 MAFIPQ8WZ33 124 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 RRNAD1Q96FB5 475 aaKnown RBP8.14□□□□□ -1.11
VPS39-205ENST00000562258 CNTNAP3BQ96NU0 1288 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 SCGB3A2Q96PL1 93 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 NKX6-3A6NJ46 265 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 E9PI62 339 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 L7N2F9 121 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 BCAP31P51572 246 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 PPP5CP53041 499 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 RAB14P61106 215 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 VAMP2P63027 116 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 CAMK2BQ13554 666 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 PEAR1Q5VY43 1037 aaPredicted RBP8.14□□□□□ -1.11
VPS39-205ENST00000562258 C12orf73Q69YU5 71 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 NLRC3Q7RTR2 1065 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 C20orf196Q8IYI0 205 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 RFESDQ8TAC1 157 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 SECTM1Q8WVN6 248 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 ACOT12Q8WYK0 555 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 TRMT61AQ96FX7 289 aaKnown RBP8.14□□□□□ -1.11
VPS39-205ENST00000562258 SLC22A4Q9H015 551 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 ACKR4Q9NPB9 350 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 TMEM38BQ9NVV0 291 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 POLDIP2Q9Y2S7 368 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 ZNF816-ZNF321PA0A0X1KG74 233 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 ANKRD33BA6NCL7 494 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 ATP6V1G2-DDX39BF2Z307 99 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 SULT1C4O75897 302 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 CCNKO75909 580 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 ADRB1P08588 477 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 ALOX5APP20292 161 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 EPHA1P21709 976 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 OR10A3P58181 314 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 EGR3Q06889 387 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 GPR176Q14439 515 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 ARL6IP1Q15041 203 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 ZNF573Q86YE8 665 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 SKA3Q8IX90 412 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 ZFP62Q8NB50 900 aaPredicted RBP8.14□□□□□ -1.11
VPS39-205ENST00000562258 ST8SIA4Q92187 359 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 EHFQ9NZC4 300 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 KIAA2026Q5HYC2 2103 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 SELEP16581 610 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 WT1P19544 449 aaPredicted RBP8.14□□□□□ -1.11
VPS39-205ENST00000562258 SLC25A1P53007 311 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 OR6F1Q8NGZ6 308 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 SLC25A40Q8TBP6 338 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 SMIM19Q96E16 107 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 KLHDC3Q9BQ90 382 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 ENY2Q9NPA8 101 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 CISD1Q9NZ45 108 aaKnown RBP8.14□□□□□ -1.11
VPS39-205ENST00000562258 COPS3Q9UNS2 423 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 PPP1R3CQ9UQK1 317 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 HELZP42694 1942 aaKnown RBP8.14□□□□□ -1.11
VPS39-205ENST00000562258 CHD9Q3L8U1 2897 aa8.13□□□□□ -1.11
VPS39-205ENST00000562258 NKX2-6A6NCS4 301 aa8.13□□□□□ -1.11
VPS39-205ENST00000562258 CD300LBA8K4G0 201 aa8.13□□□□□ -1.11
VPS39-205ENST00000562258 TK1P04183 234 aa8.13□□□□□ -1.11
VPS39-205ENST00000562258 MECP2P51608 486 aaKnown RBP8.13□□□□□ -1.11
VPS39-205ENST00000562258 ACTBP60709 375 aa8.13□□□□□ -1.11
VPS39-205ENST00000562258 PSMA6P60900 246 aaKnown RBP8.13□□□□□ -1.11
VPS39-205ENST00000562258 ACTG1P63261 375 aa8.13□□□□□ -1.11
VPS39-205ENST00000562258 EGR4Q05215 589 aa8.13□□□□□ -1.11
VPS39-205ENST00000562258 CDK10Q15131 360 aa8.13□□□□□ -1.11
VPS39-205ENST00000562258 AADACL4Q5VUY2 407 aa8.13□□□□□ -1.11
VPS39-205ENST00000562258 XAF1Q6GPH4 301 aa8.13□□□□□ -1.11
VPS39-205ENST00000562258 CFAP77Q6ZQR2 320 aa8.13□□□□□ -1.11
VPS39-205ENST00000562258 HPS1Q92902 700 aa8.13□□□□□ -1.11
VPS39-205ENST00000562258 RCE1Q9Y256 329 aa8.13□□□□□ -1.11
VPS39-205ENST00000562258 A0A1B0GUH1 482 aa8.13□□□□□ -1.11
VPS39-205ENST00000562258 MS4A18H0YCH9 400 aa8.13□□□□□ -1.11
VPS39-205ENST00000562258 RAB27BO00194 218 aa8.13□□□□□ -1.11
VPS39-205ENST00000562258 TFP02787 698 aa8.13□□□□□ -1.11
VPS39-205ENST00000562258 RLN2P04090 185 aa8.13□□□□□ -1.11
VPS39-205ENST00000562258 LIMS3P0CW19 117 aa8.13□□□□□ -1.11
VPS39-205ENST00000562258 LIMS4P0CW20 117 aa8.13□□□□□ -1.11
VPS39-205ENST00000562258 MS4A18Q3C1V0 323 aa8.13□□□□□ -1.11
VPS39-205ENST00000562258 PRSS45Q7RTY3 260 aa8.13□□□□□ -1.11
VPS39-205ENST00000562258 SYS1Q8N2H4 156 aa8.13□□□□□ -1.11
VPS39-205ENST00000562258 OR56B1Q8NGI3 324 aa8.13□□□□□ -1.11
VPS39-205ENST00000562258 OR2M2Q96R28 347 aa8.13□□□□□ -1.11
VPS39-205ENST00000562258 DOK1Q99704 481 aa8.13□□□□□ -1.11
VPS39-205ENST00000562258 JAM3Q9BX67 310 aa8.13□□□□□ -1.11
VPS39-205ENST00000562258 ST3GAL6Q9Y274 331 aa8.13□□□□□ -1.11
VPS39-205ENST00000562258 INMT-MINDY4F8WBC2 141 aa8.13□□□□□ -1.11
VPS39-205ENST00000562258 TOR1AO14656 332 aa8.13□□□□□ -1.11
VPS39-205ENST00000562258 DXOO77932 396 aaKnown RBP8.13□□□□□ -1.11
VPS39-205ENST00000562258 SERPINE2P07093 398 aa8.13□□□□□ -1.11
VPS39-205ENST00000562258 ASAH2BP0C7U1 165 aa8.13□□□□□ -1.11
VPS39-205ENST00000562258 GNLYP22749 145 aa8.13□□□□□ -1.11
VPS39-205ENST00000562258 TNFSF8P32971 234 aa8.13□□□□□ -1.11
VPS39-205ENST00000562258 RPS19P39019 145 aaKnown RBP8.13□□□□□ -1.11
VPS39-205ENST00000562258 FABP5Q01469 135 aa8.13□□□□□ -1.11
VPS39-205ENST00000562258 P2RY6Q15077 328 aa8.13□□□□□ -1.11
VPS39-205ENST00000562258 ZNF385CQ66K41 422 aaPredicted RBP8.13□□□□□ -1.11
VPS39-205ENST00000562258 OR6M1Q8NGM8 313 aa8.13□□□□□ -1.11
VPS39-205ENST00000562258 OR10AC1Q8NH08 325 aa8.13□□□□□ -1.11
VPS39-205ENST00000562258 OIT3Q8WWZ8 545 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms