RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 LRP12Q9Y561 859 aa7.94□□□□□ -1.14
LDLR-211ENST00000560173 N6AMT1Q9Y5N5 214 aa7.94□□□□□ -1.14
LDLR-211ENST00000560173 CACNG2Q9Y698 323 aa7.94□□□□□ -1.14
LDLR-211ENST00000560173 TMEM14AQ9Y6G1 99 aa7.94□□□□□ -1.14
LDLR-211ENST00000560173 FBN1P35555 2871 aaKnown RBP7.93□□□□□ -1.14
LDLR-211ENST00000560173 CD300LBA8K4G0 201 aa7.93□□□□□ -1.14
LDLR-211ENST00000560173 KIAA1324LA8MWY0 1029 aaPredicted RBP7.93□□□□□ -1.14
LDLR-211ENST00000560173 MLNRO43193 412 aa7.93□□□□□ -1.14
LDLR-211ENST00000560173 TBX1O43435 398 aa7.93□□□□□ -1.14
LDLR-211ENST00000560173 ENTPD6O75354 484 aa7.93□□□□□ -1.14
LDLR-211ENST00000560173 TACSTD2P09758 323 aa7.93□□□□□ -1.14
LDLR-211ENST00000560173 SBK2P0C263 348 aa7.93□□□□□ -1.14
LDLR-211ENST00000560173 GABRB1P18505 474 aa7.93□□□□□ -1.14
LDLR-211ENST00000560173 TNFSF4P23510 183 aa7.93□□□□□ -1.14
LDLR-211ENST00000560173 GPR6P46095 362 aaPredicted RBP7.93□□□□□ -1.14
LDLR-211ENST00000560173 TMBIM6P55061 237 aa7.93□□□□□ -1.14
LDLR-211ENST00000560173 CDH15P55291 814 aa7.93□□□□□ -1.14
LDLR-211ENST00000560173 TMEM33P57088 247 aa7.93□□□□□ -1.14
LDLR-211ENST00000560173 TMED1Q13445 227 aa7.93□□□□□ -1.14
LDLR-211ENST00000560173 TMEM249Q2WGJ8 235 aa7.93□□□□□ -1.14
LDLR-211ENST00000560173 KCTD18Q6PI47 426 aaPredicted RBP7.93□□□□□ -1.14
LDLR-211ENST00000560173 ZNF322Q6U7Q0 402 aaPredicted RBP7.93□□□□□ -1.14
LDLR-211ENST00000560173 Q71RC1 249 aaPredicted RBP7.93□□□□□ -1.14
LDLR-211ENST00000560173 FAM57BQ71RH2 274 aa7.93□□□□□ -1.14
LDLR-211ENST00000560173 KRT77Q7Z794 578 aa7.93□□□□□ -1.14
LDLR-211ENST00000560173 PRIMA1Q86XR5 153 aa7.93□□□□□ -1.14
LDLR-211ENST00000560173 HIST2H2ABQ8IUE6 130 aaPredicted RBP7.93□□□□□ -1.14
LDLR-211ENST00000560173 ZNF679Q8IYX0 411 aa7.93□□□□□ -1.14
LDLR-211ENST00000560173 STX19Q8N4C7 294 aa7.93□□□□□ -1.14
LDLR-211ENST00000560173 OR10AD1Q8NGE0 317 aa7.93□□□□□ -1.14
LDLR-211ENST00000560173 OR51G2Q8NGK0 314 aa7.93□□□□□ -1.14
LDLR-211ENST00000560173 OR13G1Q8NGZ3 307 aa7.93□□□□□ -1.14
LDLR-211ENST00000560173 SPATA3Q8NHX4 192 aa7.93□□□□□ -1.14
LDLR-211ENST00000560173 SPRYD4Q8WW59 207 aaPredicted RBP7.93□□□□□ -1.14
LDLR-211ENST00000560173 RFKQ969G6 155 aa7.93□□□□□ -1.14
LDLR-211ENST00000560173 SGK3Q96BR1 496 aa7.93□□□□□ -1.14
LDLR-211ENST00000560173 PGAM5Q96HS1 289 aa7.93□□□□□ -1.14
LDLR-211ENST00000560173 OR8B4Q96RC9 309 aa7.93□□□□□ -1.14
LDLR-211ENST00000560173 TSC22D3Q99576 134 aa7.93□□□□□ -1.14
LDLR-211ENST00000560173 TTTY10Q9BZA0 68 aa7.93□□□□□ -1.14
LDLR-211ENST00000560173 CCDC90BQ9GZT6 254 aa7.93□□□□□ -1.14
LDLR-211ENST00000560173 OR10A2Q9H208 303 aa7.93□□□□□ -1.14
LDLR-211ENST00000560173 OPA3Q9H6K4 179 aa7.93□□□□□ -1.14
LDLR-211ENST00000560173 PTTG2Q9NZH5 202 aa7.93□□□□□ -1.14
LDLR-211ENST00000560173 ZNF319Q9P2F9 582 aa7.93□□□□□ -1.14
LDLR-211ENST00000560173 PSORS1C1Q9UIG5 152 aa7.93□□□□□ -1.14
LDLR-211ENST00000560173 hCG_38984A0A1B0GV85 526 aa7.92□□□□□ -1.14
LDLR-211ENST00000560173 GGT3PA6NGU5 568 aa7.92□□□□□ -1.14
LDLR-211ENST00000560173 ZNF670-ZNF695F2Z2N8 137 aa7.92□□□□□ -1.14
LDLR-211ENST00000560173 H0YL77 283 aa7.92□□□□□ -1.14
LDLR-211ENST00000560173 PSMD9O00233 223 aa7.92□□□□□ -1.14
LDLR-211ENST00000560173 PHYHO14832 338 aa7.92□□□□□ -1.14
LDLR-211ENST00000560173 PPIHO43447 177 aaKnown RBP7.92□□□□□ -1.14
LDLR-211ENST00000560173 CD5LO43866 347 aa7.92□□□□□ -1.14
LDLR-211ENST00000560173 ZNF254O75437 659 aa7.92□□□□□ -1.14
LDLR-211ENST00000560173 WBP4O75554 376 aaKnown RBP7.92□□□□□ -1.14
LDLR-211ENST00000560173 APOL3O95236 402 aa7.92□□□□□ -1.14
LDLR-211ENST00000560173 IGHV4-31P0DP07 118 aa7.92□□□□□ -1.14
LDLR-211ENST00000560173 DCTDP32321 178 aa7.92□□□□□ -1.14
LDLR-211ENST00000560173 POU4F2Q12837 409 aa7.92□□□□□ -1.14
LDLR-211ENST00000560173 TBCEQ15813 527 aaPredicted RBP7.92□□□□□ -1.14
LDLR-211ENST00000560173 NEDD8Q15843 81 aa7.92□□□□□ -1.14
LDLR-211ENST00000560173 TIGD6Q17RP2 521 aa7.92□□□□□ -1.14
LDLR-211ENST00000560173 HFEQ30201 348 aa7.92□□□□□ -1.14
LDLR-211ENST00000560173 KLHL22Q53GT1 634 aa7.92□□□□□ -1.14
LDLR-211ENST00000560173 RNLSQ5VYX0 342 aa7.92□□□□□ -1.14
LDLR-211ENST00000560173 OR8B12Q8NGG6 310 aa7.92□□□□□ -1.14
LDLR-211ENST00000560173 OR56B2PQ8NGI1 322 aa7.92□□□□□ -1.14
LDLR-211ENST00000560173 OR13F1Q8NGS4 319 aa7.92□□□□□ -1.14
LDLR-211ENST00000560173 RAB2BQ8WUD1 216 aa7.92□□□□□ -1.14
LDLR-211ENST00000560173 ITLN1Q8WWA0 313 aa7.92□□□□□ -1.14
LDLR-211ENST00000560173 MUL1Q969V5 352 aa7.92□□□□□ -1.14
LDLR-211ENST00000560173 REEP6Q96HR9 211 aa7.92□□□□□ -1.14
LDLR-211ENST00000560173 MEGF10Q96KG7 1140 aa7.92□□□□□ -1.14
LDLR-211ENST00000560173 OR2V2Q96R30 315 aa7.92□□□□□ -1.14
LDLR-211ENST00000560173 MYCBPQ99417 103 aaPredicted RBP7.92□□□□□ -1.14
LDLR-211ENST00000560173 MROQ9BYG7 248 aa7.92□□□□□ -1.14
LDLR-211ENST00000560173 RBM38Q9H0Z9 239 aaKnown RBP7.92□□□□□ -1.14
LDLR-211ENST00000560173 RGCCQ9H4X1 137 aa7.92□□□□□ -1.14
LDLR-211ENST00000560173 BRD7Q9NPI1 651 aa7.92□□□□□ -1.14
LDLR-211ENST00000560173 TMEM100Q9NV29 134 aa7.92□□□□□ -1.14
LDLR-211ENST00000560173 FKBP14Q9NWM8 211 aa7.92□□□□□ -1.14
LDLR-211ENST00000560173 FAM206AQ9NX38 181 aa7.92□□□□□ -1.14
LDLR-211ENST00000560173 MRPL15Q9P015 296 aaKnown RBP7.92□□□□□ -1.14
LDLR-211ENST00000560173 IL19Q9UHD0 177 aa7.92□□□□□ -1.14
LDLR-211ENST00000560173 MRM2Q9UI43 246 aaKnown RBP7.92□□□□□ -1.14
LDLR-211ENST00000560173 IKZF2Q9UKS7 526 aa7.92□□□□□ -1.14
LDLR-211ENST00000560173 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP7.92□□□□□ -1.14
LDLR-211ENST00000560173 LRP5LA4QPB2 252 aa7.91□□□□□ -1.14
LDLR-211ENST00000560173 ACOD1A6NK06 481 aa7.91□□□□□ -1.14
LDLR-211ENST00000560173 CLDN25C9JDP6 229 aa7.91□□□□□ -1.14
LDLR-211ENST00000560173 F5H5P2 479 aa7.91□□□□□ -1.14
LDLR-211ENST00000560173 MAGEB4O15481 346 aaPredicted RBP7.91□□□□□ -1.14
LDLR-211ENST00000560173 XPNPEP2O43895 674 aa7.91□□□□□ -1.14
LDLR-211ENST00000560173 HLA-DPB1P04440 258 aa7.91□□□□□ -1.14
LDLR-211ENST00000560173 CDK1P06493 297 aa7.91□□□□□ -1.14
LDLR-211ENST00000560173 OR2T7P0C7T2 308 aa7.91□□□□□ -1.14
LDLR-211ENST00000560173 TNFRSF1AP19438 455 aa7.91□□□□□ -1.14
LDLR-211ENST00000560173 CA6P23280 308 aa7.91□□□□□ -1.14
LDLR-211ENST00000560173 CFL1P23528 166 aaKnown RBP7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms