RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 PCP4P48539 62 aa9.71□□□□□ -0.86
USP3-206ENST00000558157 HIST1H2BDP58876 126 aa9.71□□□□□ -0.86
USP3-206ENST00000558157 HIST1H2BCP62807 126 aa9.71□□□□□ -0.86
USP3-206ENST00000558157 ZIC1Q15915 447 aa9.71□□□□□ -0.86
USP3-206ENST00000558157 HIST2H2BEQ16778 126 aa9.71□□□□□ -0.86
USP3-206ENST00000558157 HLA-BQ31612 363 aa9.71□□□□□ -0.86
USP3-206ENST00000558157 MOGAT2Q3SYC2 334 aa9.71□□□□□ -0.86
USP3-206ENST00000558157 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.71□□□□□ -0.86
USP3-206ENST00000558157 AVL9Q8NBF6 648 aa9.71□□□□□ -0.86
USP3-206ENST00000558157 RNASEH2CQ8TDP1 164 aaKnown RBP9.71□□□□□ -0.86
USP3-206ENST00000558157 AQP3Q92482 292 aa9.71□□□□□ -0.86
USP3-206ENST00000558157 HIST1H2BHQ93079 126 aa9.71□□□□□ -0.86
USP3-206ENST00000558157 C2orf50Q96LR7 162 aa9.71□□□□□ -0.86
USP3-206ENST00000558157 ADAD1Q96M93 576 aaKnown RBP9.71□□□□□ -0.86
USP3-206ENST00000558157 HIST1H2BNQ99877 126 aa9.71□□□□□ -0.86
USP3-206ENST00000558157 HIST1H2BMQ99879 126 aa9.71□□□□□ -0.86
USP3-206ENST00000558157 TRIM2Q9C040 744 aa9.71□□□□□ -0.86
USP3-206ENST00000558157 LUZP4Q9P127 313 aa9.71□□□□□ -0.86
USP3-206ENST00000558157 LILRA5A6NI73 299 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 PRR32B1ATL7 298 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 LDLRAD4O15165 306 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 LIPCP11150 499 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 LSSP48449 732 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 PPA1Q15181 289 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 MIDNQ504T8 468 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 UNQ6494/PRO21346Q6UXR6 183 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 SPNS3Q6ZMD2 512 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 OR10AD1Q8NGE0 317 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 ZNF563Q8TA94 476 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 DCBLD2Q96PD2 775 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 TGM7Q96PF1 710 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 GPX7Q96SL4 187 aaPredicted RBP9.7□□□□□ -0.86
USP3-206ENST00000558157 NMNAT3Q96T66 252 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 C20orf24Q9BUV8 137 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 CNTNAP3Q9BZ76 1288 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 EIF5A2Q9GZV4 153 aaKnown RBP9.7□□□□□ -0.86
USP3-206ENST00000558157 CAPN10Q9HC96 672 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 PRDM7Q9NQW5 492 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 OR5AC2Q9NZP5 309 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 TCFL5Q9UL49 500 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 STRAPQ9Y3F4 350 aaKnown RBP9.7□□□□□ -0.86
USP3-206ENST00000558157 TMEM14AQ9Y6G1 99 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 WDFY4Q6ZS81 3184 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 VPS13AQ96RL7 3174 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 CCDC187A0A096LP49 1063 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 A0A0G2JN53 185 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 A0A0J9YY10 115 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 SMCO3A2RU48 225 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 MEGF11A6BM72 1044 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 CEACAM18A8MTB9 384 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 SCGNO76038 276 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 SEC11BP0C7V7 166 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 C8orf89P0DMQ9 161 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 MYF5P13349 255 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 PVRP15151 417 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 AKR1C4P17516 323 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 JOSD1Q15040 202 aaPredicted RBP9.7□□□□□ -0.86
USP3-206ENST00000558157 EBPQ15125 230 aaKnown RBP9.7□□□□□ -0.86
USP3-206ENST00000558157 ZNF674Q2M3X9 581 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 FCRL6Q6DN72 434 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 ABHD17CQ6PCB6 329 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 PEG10Q86TG7 708 aaKnown RBP9.7□□□□□ -0.86
USP3-206ENST00000558157 PPP1R3BQ86XI6 285 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 CDC20BQ86Y33 519 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 EXD3Q8N9H8 876 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 HSD17B11Q8NBQ5 300 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 OR2L5Q8NG80 312 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 OR2I1PQ8NGU4 316 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 ZNRF4Q8WWF5 429 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 HPSE2Q8WWQ2 592 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 PTCHD1Q96NR3 888 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 SCGB3A2Q96PL1 93 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 CKLFQ9UBR5 152 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 GTF2A1LQ9UNN4 478 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 DMDP11532 3685 aa9.7□□□□□ -0.86
USP3-206ENST00000558157 LOC100509620A0A075B734 347 aa9.69□□□□□ -0.86
USP3-206ENST00000558157 ELOA3DA6NLF2 546 aaPredicted RBP9.69□□□□□ -0.86
USP3-206ENST00000558157 PSMD9O00233 223 aa9.69□□□□□ -0.86
USP3-206ENST00000558157 ZNF354AO60765 605 aaPredicted RBP9.69□□□□□ -0.86
USP3-206ENST00000558157 IFNA6P05013 189 aa9.69□□□□□ -0.86
USP3-206ENST00000558157 SOD3P08294 240 aa9.69□□□□□ -0.86
USP3-206ENST00000558157 DANCRP0C864 163 aa9.69□□□□□ -0.86
USP3-206ENST00000558157 FSTP19883 344 aa9.69□□□□□ -0.86
USP3-206ENST00000558157 CAPZBP47756 277 aa9.69□□□□□ -0.86
USP3-206ENST00000558157 GAGE1Q13065 139 aa9.69□□□□□ -0.86
USP3-206ENST00000558157 IL15RAQ13261 267 aa9.69□□□□□ -0.86
USP3-206ENST00000558157 DUSP5Q16690 384 aa9.69□□□□□ -0.86
USP3-206ENST00000558157 ELOA3BQ3SY89 546 aa9.69□□□□□ -0.86
USP3-206ENST00000558157 TRIM61Q5EBN2 209 aa9.69□□□□□ -0.86
USP3-206ENST00000558157 AKR1C8PQ5T2L2 129 aa9.69□□□□□ -0.86
USP3-206ENST00000558157 ARMC6Q6NXE6 501 aa9.69□□□□□ -0.86
USP3-206ENST00000558157 LINC00114Q6XXX2 140 aa9.69□□□□□ -0.86
USP3-206ENST00000558157 RABEPKQ7Z6M1 372 aa9.69□□□□□ -0.86
USP3-206ENST00000558157 HOGA1Q86XE5 327 aa9.69□□□□□ -0.86
USP3-206ENST00000558157 ADAD2Q8NCV1 583 aaKnown RBP9.69□□□□□ -0.86
USP3-206ENST00000558157 ELOA3Q8NG57 546 aa9.69□□□□□ -0.86
USP3-206ENST00000558157 CD300LFQ8TDQ1 290 aa9.69□□□□□ -0.86
USP3-206ENST00000558157 ST7LQ8TDW4 575 aa9.69□□□□□ -0.86
USP3-206ENST00000558157 TSEN15Q8WW01 171 aaKnown RBP9.69□□□□□ -0.86
USP3-206ENST00000558157 GAL3ST3Q96A11 431 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms