RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 MAGEA6P43360 314 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 CAPZBP47756 277 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 NPY2RP49146 381 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 SPINT3P49223 89 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 BCAP31P51572 246 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 MFAP2P55001 183 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 GNG2P59768 71 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 CXCR4P61073 352 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 RAB11AP62491 216 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 RPS15P62841 145 aaKnown RBP3.32□□□□□ -1.88
PRPF39-209ENST00000556353 C2orf54Q08AI8 447 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 FLOT2Q14254 428 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 PAFAH1B3Q15102 231 aaKnown RBP3.32□□□□□ -1.88
PRPF39-209ENST00000556353 RAB11BQ15907 218 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 PSG3Q16557 428 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 UNC50Q53HI1 259 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 ACTBL2Q562R1 376 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 SEL1L2Q5TEA6 688 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 C1orf189Q5VU69 101 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 ANKRD26P1Q6NSI1 321 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 WDR74Q6RFH5 385 aaPredicted RBP3.32□□□□□ -1.88
PRPF39-209ENST00000556353 WASH2PQ6VEQ5 465 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 WDR88Q6ZMY6 472 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 LHFPL4Q7Z7J7 247 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 LUZP2Q86TE4 346 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 SERPINA12Q8IW75 414 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 SELENOHQ8IZQ5 122 aaKnown RBP3.32□□□□□ -1.88
PRPF39-209ENST00000556353 GPR26Q8NDV2 337 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 CHDHQ8NE62 594 aaPredicted RBP3.32□□□□□ -1.88
PRPF39-209ENST00000556353 OR4C5Q8NGB2 326 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 OR5D18Q8NGL1 313 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 OR5M1Q8NGP8 315 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 PHYHIPQ92561 330 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 SNRNP40Q96DI7 357 aaKnown RBP3.32□□□□□ -1.88
PRPF39-209ENST00000556353 IMP4Q96G21 291 aaKnown RBP3.32□□□□□ -1.88
PRPF39-209ENST00000556353 OR5M11Q96RB7 305 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 PELOQ9BRX2 385 aaKnown RBP3.32□□□□□ -1.88
PRPF39-209ENST00000556353 ZNF670Q9BS34 389 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 FICDQ9BVA6 458 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 LCE3DQ9BYE3 92 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 RAB1BQ9H0U4 201 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 METTL9Q9H1A3 318 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 OR2AG1Q9H205 316 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 GAL3ST2Q9H3Q3 398 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 TMEM185BQ9H7F4 350 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 TUBG2Q9NRH3 451 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 ZCCHC3Q9NUD5 404 aaKnown RBP3.32□□□□□ -1.88
PRPF39-209ENST00000556353 MS4A12Q9NXJ0 267 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 TAS2R1Q9NYW7 299 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 TP53TG5Q9Y2B4 290 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 FKBP7Q9Y680 259 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 MED12Q93074 2177 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 ABCA2Q9BZC7 2435 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 JMJD1CQ15652 2540 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 MXRA5Q9NR99 2828 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 ATRQ13535 2644 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 NCKAP5O14513 1909 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 IGHV5-51A0A0C4DH38 117 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 C13orf42A0A1B0GVH6 325 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 ZFP92A6NM28 416 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 ATP6V1G2-DDX39BF2Z307 99 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 HCRTR1O43613 425 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 BCAS1O75363 584 aaPredicted RBP3.31□□□□□ -1.88
PRPF39-209ENST00000556353 PROSCO94903 275 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 GLCEO94923 617 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 JCHAINP01591 159 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 OCMP0CE72 109 aaPredicted RBP3.31□□□□□ -1.88
PRPF39-209ENST00000556353 ZNF30P17039 623 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 HNF1AP20823 631 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 CRABP1P29762 137 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 HNRNPH3P31942 346 aaKnown RBP3.31□□□□□ -1.88
PRPF39-209ENST00000556353 CASP14P31944 242 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 RPS5P46782 204 aaKnown RBP3.31□□□□□ -1.88
PRPF39-209ENST00000556353 GSSP48637 474 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 ZNF133P52736 654 aaPredicted RBP3.31□□□□□ -1.88
PRPF39-209ENST00000556353 AP2S1P53680 142 aaPredicted RBP3.31□□□□□ -1.88
PRPF39-209ENST00000556353 PKNOX1P55347 436 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 WNT4P56705 351 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 TAS2R60P59551 318 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 UBE2G2P60604 165 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 VSNL1P62760 191 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 DYNLT1P63172 113 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 STX3Q13277 289 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 SLC10A1Q14973 349 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 SPHARQ15513 63 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 VAMP3Q15836 100 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 C5orf64Q2M2E5 130 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 ZNF658BQ4V348 819 aaPredicted RBP3.31□□□□□ -1.88
PRPF39-209ENST00000556353 IFI44LQ53G44 452 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 AKIRIN2Q53H80 203 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 PAN3Q58A45 887 aaKnown RBP3.31□□□□□ -1.88
PRPF39-209ENST00000556353 DCAF12Q5T6F0 453 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 PRAMEF5Q5TYX0 476 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 PRAMEF6Q5VXH4 476 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 FAM219BQ5XKK7 198 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 C5orf46Q6UWT4 87 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 NPSR1Q6W5P4 371 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 FAM92BQ6ZTR7 304 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 TMEM26Q6ZUK4 368 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 PRSS42Q7Z5A4 293 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms