RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 CLN8Q9UBY8 286 aa1.27□□□□□ -2.21
SCFD1-216ENST00000555550 COL5A3P25940 1745 aaPredicted RBP1.26□□□□□ -2.21
SCFD1-216ENST00000555550 SMCO3A2RU48 225 aa1.26□□□□□ -2.21
SCFD1-216ENST00000555550 ISPDA4D126 451 aa1.26□□□□□ -2.21
SCFD1-216ENST00000555550 C15orf65H3BRN8 121 aa1.26□□□□□ -2.21
SCFD1-216ENST00000555550 M0R1X1 148 aa1.26□□□□□ -2.21
SCFD1-216ENST00000555550 CPLX1O14810 134 aa1.26□□□□□ -2.21
SCFD1-216ENST00000555550 RAD1O60671 282 aa1.26□□□□□ -2.21
SCFD1-216ENST00000555550 IGKV1-16P04430 117 aa1.26□□□□□ -2.21
SCFD1-216ENST00000555550 CBR1P16152 277 aa1.26□□□□□ -2.21
SCFD1-216ENST00000555550 CTRB1P17538 263 aa1.26□□□□□ -2.21
SCFD1-216ENST00000555550 MYL9P24844 172 aa1.26□□□□□ -2.21
SCFD1-216ENST00000555550 MPIP34949 423 aa1.26□□□□□ -2.21
SCFD1-216ENST00000555550 TGM4P49221 684 aa1.26□□□□□ -2.21
SCFD1-216ENST00000555550 ZNF829Q3KNS6 432 aaPredicted RBP1.26□□□□□ -2.21
SCFD1-216ENST00000555550 CEP55Q53EZ4 464 aa1.26□□□□□ -2.21
SCFD1-216ENST00000555550 RGS9BPQ6ZS82 235 aa1.26□□□□□ -2.21
SCFD1-216ENST00000555550 PAGE2Q7Z2X7 111 aa1.26□□□□□ -2.21
SCFD1-216ENST00000555550 OR56B2PQ8NGI1 322 aa1.26□□□□□ -2.21
SCFD1-216ENST00000555550 OTUB2Q96DC9 234 aa1.26□□□□□ -2.21
SCFD1-216ENST00000555550 PIGUQ9H490 435 aa1.26□□□□□ -2.21
SCFD1-216ENST00000555550 RGS18Q9NS28 235 aa1.26□□□□□ -2.21
SCFD1-216ENST00000555550 BAHCC1Q9P281 2608 aa1.26□□□□□ -2.21
SCFD1-216ENST00000555550 KIAA1671Q9BY89 1806 aa1.25□□□□□ -2.21
SCFD1-216ENST00000555550 A6NDN8 102 aa1.25□□□□□ -2.21
SCFD1-216ENST00000555550 AQP8O94778 261 aa1.25□□□□□ -2.21
SCFD1-216ENST00000555550 HPRT1P00492 218 aa1.25□□□□□ -2.21
SCFD1-216ENST00000555550 NRASP01111 189 aa1.25□□□□□ -2.21
SCFD1-216ENST00000555550 HRASP01112 189 aa1.25□□□□□ -2.21
SCFD1-216ENST00000555550 KRASP01116 189 aa1.25□□□□□ -2.21
SCFD1-216ENST00000555550 OR1E1P30953 314 aa1.25□□□□□ -2.21
SCFD1-216ENST00000555550 FUSP35637 526 aaKnown RBP eCLIP1.25□□□□□ -2.21
SCFD1-216ENST00000555550 RAB9AP51151 201 aa1.25□□□□□ -2.21
SCFD1-216ENST00000555550 KLF3P57682 345 aaPredicted RBP1.25□□□□□ -2.21
SCFD1-216ENST00000555550 IDI1Q13907 227 aa1.25□□□□□ -2.21
SCFD1-216ENST00000555550 MAJINQ3KP22 176 aa1.25□□□□□ -2.21
SCFD1-216ENST00000555550 HSP90AB3PQ58FF7 597 aa1.25□□□□□ -2.21
SCFD1-216ENST00000555550 TTC23LQ6PF05 361 aa1.25□□□□□ -2.21
SCFD1-216ENST00000555550 CASC1Q6TDU7 716 aa1.25□□□□□ -2.21
SCFD1-216ENST00000555550 TMPPEQ6ZT21 453 aa1.25□□□□□ -2.21
SCFD1-216ENST00000555550 CBLN2Q8IUK8 224 aa1.25□□□□□ -2.21
SCFD1-216ENST00000555550 BBS7Q8IWZ6 715 aa1.25□□□□□ -2.21
SCFD1-216ENST00000555550 DRAM1Q8N682 238 aa1.25□□□□□ -2.21
SCFD1-216ENST00000555550 BPIFCQ8NFQ6 507 aa1.25□□□□□ -2.21
SCFD1-216ENST00000555550 OR4A4PQ8NGN8 299 aa1.25□□□□□ -2.21
SCFD1-216ENST00000555550 OR4C13Q8NGP0 309 aa1.25□□□□□ -2.21
SCFD1-216ENST00000555550 LYPD6BQ8NI32 183 aa1.25□□□□□ -2.21
SCFD1-216ENST00000555550 MUC7Q8TAX7 377 aa1.25□□□□□ -2.21
SCFD1-216ENST00000555550 DCAF16Q9NXF7 216 aa1.25□□□□□ -2.21
SCFD1-216ENST00000555550 SLC22A7Q9Y694 548 aa1.25□□□□□ -2.21
SCFD1-216ENST00000555550 H7C0C1 242 aa1.24□□□□□ -2.21
SCFD1-216ENST00000555550 AP3B1O00203 1094 aa1.24□□□□□ -2.21
SCFD1-216ENST00000555550 GABRPO00591 440 aa1.24□□□□□ -2.21
SCFD1-216ENST00000555550 NDUFAB1O14561 156 aa1.24□□□□□ -2.21
SCFD1-216ENST00000555550 SYNGR2O43760 224 aa1.24□□□□□ -2.21
SCFD1-216ENST00000555550 FGFR1OPO95684 399 aaKnown RBP1.24□□□□□ -2.21
SCFD1-216ENST00000555550 LSM8O95777 96 aaKnown RBP1.24□□□□□ -2.21
SCFD1-216ENST00000555550 IGHV1-46P01743 117 aa1.24□□□□□ -2.21
SCFD1-216ENST00000555550 PTMSP20962 102 aa1.24□□□□□ -2.21
SCFD1-216ENST00000555550 BMI1P35226 326 aa1.24□□□□□ -2.21
SCFD1-216ENST00000555550 APLNRP35414 380 aa1.24□□□□□ -2.21
SCFD1-216ENST00000555550 ATP5OP48047 213 aa1.24□□□□□ -2.21
SCFD1-216ENST00000555550 ZNF121P58317 390 aaPredicted RBP1.24□□□□□ -2.21
SCFD1-216ENST00000555550 LIPEQ05469 1076 aa1.24□□□□□ -2.21
SCFD1-216ENST00000555550 LIN9Q5TKA1 542 aa1.24□□□□□ -2.21
SCFD1-216ENST00000555550 ZNF470Q6ECI4 717 aa1.24□□□□□ -2.21
SCFD1-216ENST00000555550 C22orf42Q6IC83 251 aa1.24□□□□□ -2.21
SCFD1-216ENST00000555550 ZYG11AQ6WRX3 759 aa1.24□□□□□ -2.21
SCFD1-216ENST00000555550 CDH26Q8IXH8 852 aa1.24□□□□□ -2.21
SCFD1-216ENST00000555550 SLC25A29Q8N8R3 303 aa1.24□□□□□ -2.21
SCFD1-216ENST00000555550 OR7G2Q8NG99 324 aa1.24□□□□□ -2.21
SCFD1-216ENST00000555550 OR4M2Q8NGB6 313 aa1.24□□□□□ -2.21
SCFD1-216ENST00000555550 ZNF649Q9BS31 505 aa1.24□□□□□ -2.21
SCFD1-216ENST00000555550 MRM3Q9HC36 420 aaKnown RBP1.24□□□□□ -2.21
SCFD1-216ENST00000555550 INIPQ9NRY2 104 aa1.24□□□□□ -2.21
SCFD1-216ENST00000555550 COMMD3-BMI1R4GMX3 469 aa1.24□□□□□ -2.21
SCFD1-216ENST00000555550 NSD2O96028 1365 aa1.23□□□□□ -2.21
SCFD1-216ENST00000555550 TRIM64CA6NLI5 447 aa1.23□□□□□ -2.21
SCFD1-216ENST00000555550 CPSF4O95639 269 aaKnown RBP1.23□□□□□ -2.21
SCFD1-216ENST00000555550 CALRP27797 417 aaKnown RBP1.23□□□□□ -2.21
SCFD1-216ENST00000555550 PBLDP30039 288 aaPredicted RBP1.23□□□□□ -2.21
SCFD1-216ENST00000555550 PFN2P35080 140 aa1.23□□□□□ -2.21
SCFD1-216ENST00000555550 GGT2P36268 569 aa1.23□□□□□ -2.21
SCFD1-216ENST00000555550 RAB10P61026 200 aa1.23□□□□□ -2.21
SCFD1-216ENST00000555550 IL5RAQ01344 420 aa1.23□□□□□ -2.21
SCFD1-216ENST00000555550 FMODQ06828 376 aa1.23□□□□□ -2.21
SCFD1-216ENST00000555550 MRPL23Q16540 153 aaKnown RBP1.23□□□□□ -2.21
SCFD1-216ENST00000555550 NANOGNBQ7Z5D8 188 aa1.23□□□□□ -2.21
SCFD1-216ENST00000555550 OR5K2Q8NHB8 316 aa1.23□□□□□ -2.21
SCFD1-216ENST00000555550 TMEM38AQ9H6F2 299 aa1.23□□□□□ -2.21
SCFD1-216ENST00000555550 ZNF442Q9H7R0 627 aa1.23□□□□□ -2.21
SCFD1-216ENST00000555550 AGPAT4Q9NRZ5 378 aa1.23□□□□□ -2.21
SCFD1-216ENST00000555550 RAB22AQ9UL26 194 aa1.23□□□□□ -2.21
SCFD1-216ENST00000555550 COL22A1Q8NFW1 1626 aaPredicted RBP1.22□□□□□ -2.21
SCFD1-216ENST00000555550 LSM1O15116 133 aaKnown RBP1.22□□□□□ -2.21
SCFD1-216ENST00000555550 IGHG2P01859 326 aa1.22□□□□□ -2.21
SCFD1-216ENST00000555550 PGA5P0DJD9 388 aa1.22□□□□□ -2.21
SCFD1-216ENST00000555550 USF1P22415 310 aaPredicted RBP1.22□□□□□ -2.21
SCFD1-216ENST00000555550 PPP1CAP62136 330 aa1.22□□□□□ -2.21
SCFD1-216ENST00000555550 SELENBP1Q13228 472 aa1.22□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms