RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 GK2Q14410 553 aaPredicted RBP9.27□□□□□ -0.93
TDP1-211ENST00000555178 ALKBH6Q3KRA9 238 aa9.27□□□□□ -0.93
TDP1-211ENST00000555178 HIST2H2BCQ6DN03 193 aa9.27□□□□□ -0.93
TDP1-211ENST00000555178 DMRTC2Q8IXT2 367 aaPredicted RBP9.27□□□□□ -0.93
TDP1-211ENST00000555178 KBTBD8Q8NFY9 601 aa9.27□□□□□ -0.93
TDP1-211ENST00000555178 OR52H1Q8NGJ2 320 aa9.27□□□□□ -0.93
TDP1-211ENST00000555178 OR14K1Q8NGZ2 314 aa9.27□□□□□ -0.93
TDP1-211ENST00000555178 CDH20Q9HBT6 801 aa9.27□□□□□ -0.93
TDP1-211ENST00000555178 OBP2BQ9NPH6 170 aa9.27□□□□□ -0.93
TDP1-211ENST00000555178 ZNF275Q9NSD4 429 aaPredicted RBP9.27□□□□□ -0.93
TDP1-211ENST00000555178 GSTK1Q9Y2Q3 226 aa9.27□□□□□ -0.93
TDP1-211ENST00000555178 CHD3Q12873 2000 aaKnown RBP9.27□□□□□ -0.93
TDP1-211ENST00000555178 CSMD2Q7Z408 3487 aa9.26□□□□□ -0.93
TDP1-211ENST00000555178 PTPN13Q12923 2485 aa9.26□□□□□ -0.93
TDP1-211ENST00000555178 hCG_38984A0A1B0GV85 526 aa9.26□□□□□ -0.93
TDP1-211ENST00000555178 TUBAL3A6NHL2 446 aa9.26□□□□□ -0.93
TDP1-211ENST00000555178 DEFB108AA8MXU0 73 aa9.26□□□□□ -0.93
TDP1-211ENST00000555178 CASKO14936 926 aa9.26□□□□□ -0.93
TDP1-211ENST00000555178 LILRA1O75019 489 aa9.26□□□□□ -0.93
TDP1-211ENST00000555178 GATBO75879 557 aaKnown RBP9.26□□□□□ -0.93
TDP1-211ENST00000555178 MAS1P04201 325 aa9.26□□□□□ -0.93
TDP1-211ENST00000555178 GALP22466 123 aa9.26□□□□□ -0.93
TDP1-211ENST00000555178 HNRNPA0Q13151 305 aaKnown RBP9.26□□□□□ -0.93
TDP1-211ENST00000555178 RNF144BQ7Z419 303 aa9.26□□□□□ -0.93
TDP1-211ENST00000555178 SSC4DQ8WTU2 575 aa9.26□□□□□ -0.93
TDP1-211ENST00000555178 PLPPR2Q96GM1 343 aa9.26□□□□□ -0.93
TDP1-211ENST00000555178 AK6Q9Y3D8 172 aaKnown RBP9.26□□□□□ -0.93
TDP1-211ENST00000555178 ARFGEF3Q5TH69 2177 aa9.26□□□□□ -0.93
TDP1-211ENST00000555178 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP9.25□□□□□ -0.93
TDP1-211ENST00000555178 DHRS3O75911 302 aa9.25□□□□□ -0.93
TDP1-211ENST00000555178 SRMP19623 302 aa9.25□□□□□ -0.93
TDP1-211ENST00000555178 GNALP38405 381 aa9.25□□□□□ -0.93
TDP1-211ENST00000555178 FAM3AP98173 230 aa9.25□□□□□ -0.93
TDP1-211ENST00000555178 CACNA1DQ01668 2161 aa9.25□□□□□ -0.93
TDP1-211ENST00000555178 CEP78Q5JTW2 689 aa9.25□□□□□ -0.93
TDP1-211ENST00000555178 ADAM5Q6NVV9 412 aa9.25□□□□□ -0.93
TDP1-211ENST00000555178 DOK3Q7L591 496 aa9.25□□□□□ -0.93
TDP1-211ENST00000555178 PLPP7Q8NBV4 271 aa9.25□□□□□ -0.93
TDP1-211ENST00000555178 BHLHE23Q8NDY6 225 aa9.25□□□□□ -0.93
TDP1-211ENST00000555178 LILRB1Q8NHL6 650 aaPredicted RBP9.25□□□□□ -0.93
TDP1-211ENST00000555178 APOBEC3DQ96AK3 386 aaPredicted RBP9.25□□□□□ -0.93
TDP1-211ENST00000555178 OR2J1Q9GZK6 312 aa9.25□□□□□ -0.93
TDP1-211ENST00000555178 PIGLQ9Y2B2 252 aa9.25□□□□□ -0.93
TDP1-211ENST00000555178 A0A0G2JK05 382 aa9.25□□□□□ -0.93
TDP1-211ENST00000555178 ABCD4O14678 606 aa9.25□□□□□ -0.93
TDP1-211ENST00000555178 MYL9P24844 172 aa9.25□□□□□ -0.93
TDP1-211ENST00000555178 MPV17P39210 176 aa9.25□□□□□ -0.93
TDP1-211ENST00000555178 GSK3AP49840 483 aa9.25□□□□□ -0.93
TDP1-211ENST00000555178 SORDQ00796 357 aa9.25□□□□□ -0.93
TDP1-211ENST00000555178 LRRTM1Q86UE6 522 aa9.25□□□□□ -0.93
TDP1-211ENST00000555178 LRP11Q86VZ4 500 aa9.25□□□□□ -0.93
TDP1-211ENST00000555178 PIAS4Q8N2W9 510 aaPredicted RBP9.25□□□□□ -0.93
TDP1-211ENST00000555178 OR13C9Q8NGT0 318 aa9.25□□□□□ -0.93
TDP1-211ENST00000555178 SPACA5Q96QH8 159 aa9.25□□□□□ -0.93
TDP1-211ENST00000555178 SLIRPQ9GZT3 109 aaKnown RBP9.25□□□□□ -0.93
TDP1-211ENST00000555178 PLEKHA1Q9HB21 404 aa9.25□□□□□ -0.93
TDP1-211ENST00000555178 V9GYS6 101 aa9.25□□□□□ -0.93
TDP1-211ENST00000555178 A0A0B4J203 849 aa9.24□□□□□ -0.93
TDP1-211ENST00000555178 PRSS44E7EML9 344 aa9.24□□□□□ -0.93
TDP1-211ENST00000555178 ARL6IP5O75915 188 aa9.24□□□□□ -0.93
TDP1-211ENST00000555178 SLC2A2P11168 524 aaPredicted RBP9.24□□□□□ -0.93
TDP1-211ENST00000555178 MAPK3P27361 379 aaPredicted RBP9.24□□□□□ -0.93
TDP1-211ENST00000555178 MTNR1BP49286 362 aa9.24□□□□□ -0.93
TDP1-211ENST00000555178 UCP2P55851 309 aa9.24□□□□□ -0.93
TDP1-211ENST00000555178 NCMAPQ5T1S8 102 aa9.24□□□□□ -0.93
TDP1-211ENST00000555178 VHLLQ6RSH7 139 aa9.24□□□□□ -0.93
TDP1-211ENST00000555178 FAM169BQ8N8A8 192 aa9.24□□□□□ -0.93
TDP1-211ENST00000555178 OR56B2PQ8NGI1 322 aa9.24□□□□□ -0.93
TDP1-211ENST00000555178 OR1J1Q8NGS3 322 aa9.24□□□□□ -0.93
TDP1-211ENST00000555178 SLC25A40Q8TBP6 338 aa9.24□□□□□ -0.93
TDP1-211ENST00000555178 NPRL2Q8WTW4 380 aa9.24□□□□□ -0.93
TDP1-211ENST00000555178 DVL3Q92997 716 aaPredicted RBP9.24□□□□□ -0.93
TDP1-211ENST00000555178 SPSB4Q96A44 273 aa9.24□□□□□ -0.93
TDP1-211ENST00000555178 SLC25A46Q96AG3 418 aa9.24□□□□□ -0.93
TDP1-211ENST00000555178 RADILQ96JH8 1075 aa9.24□□□□□ -0.93
TDP1-211ENST00000555178 OR10A4Q9H209 315 aa9.24□□□□□ -0.93
TDP1-211ENST00000555178 TBCCD1Q9NVR7 557 aa9.24□□□□□ -0.93
TDP1-211ENST00000555178 PTTG2Q9NZH5 202 aa9.24□□□□□ -0.93
TDP1-211ENST00000555178 MYEF2Q9P2K5 600 aaKnown RBP9.24□□□□□ -0.93
TDP1-211ENST00000555178 RAI1Q7Z5J4 1906 aaPredicted RBP9.24□□□□□ -0.93
TDP1-211ENST00000555178 SHISA9B4DS77 424 aa9.24□□□□□ -0.93
TDP1-211ENST00000555178 XRCC2O43543 280 aa9.24□□□□□ -0.93
TDP1-211ENST00000555178 IL1AP01583 271 aa9.24□□□□□ -0.93
TDP1-211ENST00000555178 CD2P06729 351 aa9.24□□□□□ -0.93
TDP1-211ENST00000555178 ZNF20P17024 532 aa9.24□□□□□ -0.93
TDP1-211ENST00000555178 IGFBP3P17936 291 aaPredicted RBP9.24□□□□□ -0.93
TDP1-211ENST00000555178 KIR2DL3P43628 341 aa9.24□□□□□ -0.93
TDP1-211ENST00000555178 PPP1CBP62140 327 aa9.24□□□□□ -0.93
TDP1-211ENST00000555178 MEX3BQ6ZN04 569 aaKnown RBP9.24□□□□□ -0.93
TDP1-211ENST00000555178 PGAP1Q75T13 922 aa9.24□□□□□ -0.93
TDP1-211ENST00000555178 PARP16Q8N5Y8 322 aa9.24□□□□□ -0.93
TDP1-211ENST00000555178 ACBD4Q8NC06 268 aa9.24□□□□□ -0.93
TDP1-211ENST00000555178 GTF3AQ92664 365 aaKnown RBP9.24□□□□□ -0.93
TDP1-211ENST00000555178 PIK3IP1Q96FE7 263 aa9.24□□□□□ -0.93
TDP1-211ENST00000555178 REPIN1Q9BWE0 567 aaKnown RBP9.24□□□□□ -0.93
TDP1-211ENST00000555178 TCF7L1Q9HCS4 588 aa9.24□□□□□ -0.93
TDP1-211ENST00000555178 PLEKHB1Q9UF11 243 aaPredicted RBP9.24□□□□□ -0.93
TDP1-211ENST00000555178 TRAV1-2A0A0B4J238 106 aa9.23□□□□□ -0.93
TDP1-211ENST00000555178 IGKV1-9A0A0C4DH69 117 aa9.23□□□□□ -0.93
TDP1-211ENST00000555178 ICMTO60725 284 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms