RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 APOBEC3DQ96AK3 386 aaPredicted RBP4.35□□□□□ -1.71
VTI1B-202ENST00000553619 C12orf43Q96C57 262 aaKnown RBP4.35□□□□□ -1.71
VTI1B-202ENST00000553619 C10orf35Q96D05 121 aa4.35□□□□□ -1.71
VTI1B-202ENST00000553619 ZNF503Q96F45 646 aa4.35□□□□□ -1.71
VTI1B-202ENST00000553619 ZNF799Q96GE5 643 aa4.35□□□□□ -1.71
VTI1B-202ENST00000553619 DOK1Q99704 481 aa4.35□□□□□ -1.71
VTI1B-202ENST00000553619 KCNS3Q9BQ31 491 aa4.35□□□□□ -1.71
VTI1B-202ENST00000553619 CHCHD6Q9BRQ6 235 aa4.35□□□□□ -1.71
VTI1B-202ENST00000553619 TMED9Q9BVK6 235 aa4.35□□□□□ -1.71
VTI1B-202ENST00000553619 TTTY10Q9BZA0 68 aa4.35□□□□□ -1.71
VTI1B-202ENST00000553619 PBOV1Q9GZY1 135 aa4.35□□□□□ -1.71
VTI1B-202ENST00000553619 WNT5BQ9H1J7 359 aa4.35□□□□□ -1.71
VTI1B-202ENST00000553619 OPN3Q9H1Y3 402 aaPredicted RBP4.35□□□□□ -1.71
VTI1B-202ENST00000553619 OPA3Q9H6K4 179 aa4.35□□□□□ -1.71
VTI1B-202ENST00000553619 CDH20Q9HBT6 801 aa4.35□□□□□ -1.71
VTI1B-202ENST00000553619 TCF7L1Q9HCS4 588 aa4.35□□□□□ -1.71
VTI1B-202ENST00000553619 KCNJ16Q9NPI9 418 aa4.35□□□□□ -1.71
VTI1B-202ENST00000553619 ACOXLQ9NUZ1 547 aa4.35□□□□□ -1.71
VTI1B-202ENST00000553619 TXNL4BQ9NX01 149 aaKnown RBP4.35□□□□□ -1.71
VTI1B-202ENST00000553619 B3GNT2Q9NY97 397 aa4.35□□□□□ -1.71
VTI1B-202ENST00000553619 NDRG3Q9UGV2 375 aa4.35□□□□□ -1.71
VTI1B-202ENST00000553619 NUFIP1Q9UHK0 495 aaKnown RBP4.35□□□□□ -1.71
VTI1B-202ENST00000553619 HHLA2Q9UM44 414 aa4.35□□□□□ -1.71
VTI1B-202ENST00000553619 SLC22A13Q9Y226 551 aa4.35□□□□□ -1.71
VTI1B-202ENST00000553619 GRIP1Q9Y3R0 1128 aa4.35□□□□□ -1.71
VTI1B-202ENST00000553619 SPEF1Q9Y4P9 236 aa4.35□□□□□ -1.71
VTI1B-202ENST00000553619 VPS13AQ96RL7 3174 aa4.35□□□□□ -1.71
VTI1B-202ENST00000553619 TRAV1-2A0A0B4J238 106 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 A0A0U1RQV5 110 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 LOC100506127A0A0U1RQW1 187 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 PNMA8CA0A1B0GUJ8 204 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 LOC390937A0A1W2PQ73 354 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 OR4C45A6NMZ5 311 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 E9PI62 339 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 GABRPO00591 440 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 CASKO14936 926 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 MAGEB3O15480 346 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 MAGEB4O15481 346 aaPredicted RBP4.34□□□□□ -1.71
VTI1B-202ENST00000553619 SYT7O43581 403 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 SRSF10O75494 262 aaKnown RBP4.34□□□□□ -1.71
VTI1B-202ENST00000553619 GABARAPO95166 117 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 LALBAP00709 142 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 IL1AP01583 271 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 HLA-HP01893 362 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 ADH4P08319 380 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 ACSM4P0C7M7 580 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 OCM2P0CE71 109 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 SELEP16581 610 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 CCNOP22674 350 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 GADD45AP24522 165 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 TGFBR2P37173 567 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 GNALP38405 381 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 DDOSTP39656 456 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 CRYBB2P43320 205 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 CX3CR1P49238 355 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 ASCL1P50553 236 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 RORCP51449 518 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 FOXG1P55316 489 aaPredicted RBP4.34□□□□□ -1.71
VTI1B-202ENST00000553619 ZNF121P58317 390 aaPredicted RBP4.34□□□□□ -1.71
VTI1B-202ENST00000553619 DGCR2P98153 550 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 RIN1Q13671 783 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 PPA1Q15181 289 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 SSX1Q16384 188 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 HIKESHIQ53FT3 197 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 SOWAHCQ53LP3 525 aaPredicted RBP4.34□□□□□ -1.71
VTI1B-202ENST00000553619 WDR38Q5JTN6 314 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 CD200R1LQ6Q8B3 271 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 ZNF474Q6S9Z5 364 aaPredicted RBP4.34□□□□□ -1.71
VTI1B-202ENST00000553619 STAC2Q6ZMT1 411 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 CFAP77Q6ZQR2 320 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 Q6ZSN1 163 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 FAM57BQ71RH2 274 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 PGAP1Q75T13 922 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 DOK3Q7L591 496 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 MDP1Q86V88 176 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 FJX1Q86VR8 437 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 COMMD2Q86X83 199 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 SERPINA12Q8IW75 414 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 ZFP41Q8N8Y5 198 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 NAXEQ8NCW5 288 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 OR5D14Q8NGL3 314 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 OR10S1Q8NGN2 331 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 AKR7LQ8NHP1 331 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 RPS4Y2Q8TD47 263 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 CA5BP1Q8WTZ4 195 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 ZFAND2BQ8WV99 257 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 TSEN15Q8WW01 171 aaKnown RBP4.34□□□□□ -1.71
VTI1B-202ENST00000553619 TMEM203Q969S6 136 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 ISOC1Q96CN7 298 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 FOXRED1Q96CU9 486 aaPredicted RBP4.34□□□□□ -1.71
VTI1B-202ENST00000553619 C4orf45Q96LM5 186 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 AMELYQ99218 206 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 MED18Q9BUE0 208 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 MRI1Q9BV20 369 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 C1QTNF5Q9BXJ0 243 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 OR51E2Q9H255 320 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 PNRC2Q9NPJ4 139 aaKnown RBP4.34□□□□□ -1.71
VTI1B-202ENST00000553619 G6PC2Q9NQR9 355 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 TBCCD1Q9NVR7 557 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 FAM206AQ9NX38 181 aa4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms