RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 RAB5AP20339 215 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 PTNP21246 168 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 S1PR1P21453 382 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 SLC2A5P22732 501 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 GLP1RP43220 463 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 CAV2P51636 162 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 PRKXP51817 358 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 ATP1B3P54709 279 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 NAAAQ02083 359 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 KRBOX4Q5JUW0 171 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 NCMAPQ5T1S8 102 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 PRAMEF8Q5VWM4 474 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 PRAMEF7Q5VXH5 474 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 REC114Q7Z4M0 266 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 ZNF227Q86WZ6 799 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 ARRDC1Q8N5I2 433 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 ZNF721Q8TF20 911 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 NUDCD2Q8WVJ2 157 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 DAZLQ92904 295 aaKnown RBP6.81□□□□□ -1.32
LIMA1-216ENST00000552909 SLAMF9Q96A28 289 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 MEGF10Q96KG7 1140 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 LURAP1Q96LR2 239 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 SLITRK2Q9H156 845 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 HRH4Q9H3N8 390 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 RPS10P5Q9NQ39 176 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 GNG8Q9UK08 70 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 SLC7A7Q9UM01 511 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 SLC35A3Q9Y2D2 325 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 NOP16Q9Y3C1 178 aaKnown RBP6.81□□□□□ -1.32
LIMA1-216ENST00000552909 HECTD1Q9ULT8 2610 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 SPTAN1Q13813 2472 aaKnown RBP6.8□□□□□ -1.32
LIMA1-216ENST00000552909 OR5H15A6NDH6 313 aa6.8□□□□□ -1.32
LIMA1-216ENST00000552909 A6NLC8 198 aa6.8□□□□□ -1.32
LIMA1-216ENST00000552909 BLOC1S5-TXNDC5H3BN57 136 aa6.8□□□□□ -1.32
LIMA1-216ENST00000552909 CCSO14618 274 aa6.8□□□□□ -1.32
LIMA1-216ENST00000552909 RCBTB2O95199 551 aa6.8□□□□□ -1.32
LIMA1-216ENST00000552909 THY1P04216 161 aa6.8□□□□□ -1.32
LIMA1-216ENST00000552909 CD3DP04234 171 aa6.8□□□□□ -1.32
LIMA1-216ENST00000552909 IGKV3-11P04433 115 aa6.8□□□□□ -1.32
LIMA1-216ENST00000552909 CD14P08571 375 aa6.8□□□□□ -1.32
LIMA1-216ENST00000552909 GABRA3P34903 492 aa6.8□□□□□ -1.32
LIMA1-216ENST00000552909 AKR1C3P42330 323 aa6.8□□□□□ -1.32
LIMA1-216ENST00000552909 MAGEB1P43366 347 aa6.8□□□□□ -1.32
LIMA1-216ENST00000552909 MLF1P58340 268 aa6.8□□□□□ -1.32
LIMA1-216ENST00000552909 FXYD6P3P58550 94 aa6.8□□□□□ -1.32
LIMA1-216ENST00000552909 RAB4BP61018 213 aa6.8□□□□□ -1.32
LIMA1-216ENST00000552909 LTBQ06643 244 aa6.8□□□□□ -1.32
LIMA1-216ENST00000552909 SKP2Q13309 424 aa6.8□□□□□ -1.32
LIMA1-216ENST00000552909 BIKQ13323 160 aa6.8□□□□□ -1.32
LIMA1-216ENST00000552909 OR7A5Q15622 319 aa6.8□□□□□ -1.32
LIMA1-216ENST00000552909 DUSP5Q16690 384 aa6.8□□□□□ -1.32
LIMA1-216ENST00000552909 MST1LQ2TV78 715 aa6.8□□□□□ -1.32
LIMA1-216ENST00000552909 PYY3Q5JQD4 70 aa6.8□□□□□ -1.32
LIMA1-216ENST00000552909 STEAP1BQ6NZ63 245 aa6.8□□□□□ -1.32
LIMA1-216ENST00000552909 FIGNL1Q6PIW4 674 aa6.8□□□□□ -1.32
LIMA1-216ENST00000552909 DRAM2Q6UX65 266 aa6.8□□□□□ -1.32
LIMA1-216ENST00000552909 ETV3LQ6ZN32 361 aa6.8□□□□□ -1.32
LIMA1-216ENST00000552909 DND1Q8IYX4 353 aaKnown RBP6.8□□□□□ -1.32
LIMA1-216ENST00000552909 OR1J2Q8NGS2 313 aa6.8□□□□□ -1.32
LIMA1-216ENST00000552909 OR8S1Q8NH09 359 aa6.8□□□□□ -1.32
LIMA1-216ENST00000552909 SNX33Q8WV41 574 aa6.8□□□□□ -1.32
LIMA1-216ENST00000552909 TMED6Q8WW62 240 aa6.8□□□□□ -1.32
LIMA1-216ENST00000552909 CDS1Q92903 461 aa6.8□□□□□ -1.32
LIMA1-216ENST00000552909 ZG16BQ96DA0 208 aa6.8□□□□□ -1.32
LIMA1-216ENST00000552909 SEC22AQ96IW7 307 aa6.8□□□□□ -1.32
LIMA1-216ENST00000552909 TAAR6Q96RI8 345 aa6.8□□□□□ -1.32
LIMA1-216ENST00000552909 SLC25A21Q9BQT8 299 aaPredicted RBP6.8□□□□□ -1.32
LIMA1-216ENST00000552909 POTEKPQ9BYX7 375 aa6.8□□□□□ -1.32
LIMA1-216ENST00000552909 TUBA4BQ9H853 241 aa6.8□□□□□ -1.32
LIMA1-216ENST00000552909 LPAR3Q9UBY5 353 aa6.8□□□□□ -1.32
LIMA1-216ENST00000552909 ASH1LQ9NR48 2969 aaKnown RBP6.8□□□□□ -1.32
LIMA1-216ENST00000552909 TMEM72A0PK05 275 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 MFNGO00587 321 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 FCMRO60667 390 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 OR2J2O76002 312 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 NEURL1O76050 574 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 ZFAND5O76080 213 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 AGR2O95994 175 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 IFNGP01579 166 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 CLPSP04118 112 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 GYPBP06028 91 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 FAM157CP0CG43 387 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 FUT1P19526 365 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 ACKR3P25106 362 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 S100A2P29034 98 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 UQCRFS1P47985 274 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 EMDP50402 254 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 RNF4P78317 190 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 FOXK1P85037 733 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 HGFACQ04756 655 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 DUSP8Q13202 625 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 DHRS2Q13268 280 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 CRMP1Q14194 572 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 OR1C1Q15619 314 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 NKPD1Q17RQ9 610 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 RHOUQ7L0Q8 258 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 CDRT4Q8N9R6 151 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 OR4K17Q8NGC6 315 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 S100PBPQ96BU1 408 aa6.79□□□□□ -1.32
LIMA1-216ENST00000552909 MYOZ1Q9NP98 299 aaPredicted RBP6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms