RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 ITGB2P05107 769 aa14.53□□□□□ -0.08
CUX1-213ENST00000549414 ZNF14P17017 642 aaPredicted RBP14.53□□□□□ -0.08
CUX1-213ENST00000549414 INPP5JQ15735 1006 aaPredicted RBP14.53□□□□□ -0.08
CUX1-213ENST00000549414 CHCHD2P9Q5T1J5 151 aaPredicted RBP14.53□□□□□ -0.08
CUX1-213ENST00000549414 SLC22A25Q6T423 547 aa14.53□□□□□ -0.08
CUX1-213ENST00000549414 C20orf196Q8IYI0 205 aa14.53□□□□□ -0.08
CUX1-213ENST00000549414 SLC25A45Q8N413 288 aa14.53□□□□□ -0.08
CUX1-213ENST00000549414 TMEM217Q8N7C4 229 aa14.53□□□□□ -0.08
CUX1-213ENST00000549414 OR2V1Q8NHB1 315 aa14.53□□□□□ -0.08
CUX1-213ENST00000549414 UFSP2Q9NUQ7 469 aa14.53□□□□□ -0.08
CUX1-213ENST00000549414 MRPS18AQ9NVS2 196 aaKnown RBP14.53□□□□□ -0.08
CUX1-213ENST00000549414 CCDC187A0A096LP49 1063 aa14.53□□□□□ -0.08
CUX1-213ENST00000549414 MKRN2OSH3BPM6 223 aa14.53□□□□□ -0.08
CUX1-213ENST00000549414 ALX3O95076 343 aa14.53□□□□□ -0.08
CUX1-213ENST00000549414 FAM157BP0CG42 384 aa14.53□□□□□ -0.08
CUX1-213ENST00000549414 MECP2P51608 486 aaKnown RBP14.53□□□□□ -0.08
CUX1-213ENST00000549414 TRIP6Q15654 476 aaKnown RBP14.53□□□□□ -0.08
CUX1-213ENST00000549414 FAM74A1Q5RGS3 127 aa14.53□□□□□ -0.08
CUX1-213ENST00000549414 TCTE3Q8IZS6 198 aa14.53□□□□□ -0.08
CUX1-213ENST00000549414 DTWD2Q8NBA8 298 aa14.53□□□□□ -0.08
CUX1-213ENST00000549414 OR51H1Q8NH63 302 aa14.53□□□□□ -0.08
CUX1-213ENST00000549414 ARPC5LQ9BPX5 153 aa14.53□□□□□ -0.08
CUX1-213ENST00000549414 OCSTAMPQ9BR26 566 aa14.53□□□□□ -0.08
CUX1-213ENST00000549414 CSAG2Q9Y5P2 127 aa14.53□□□□□ -0.08
CUX1-213ENST00000549414 IGHV5-10-1A0A0J9YXX1 117 aa14.53□□□□□ -0.08
CUX1-213ENST00000549414 RGS11O94810 467 aa14.53□□□□□ -0.08
CUX1-213ENST00000549414 ACER2Q5QJU3 275 aa14.53□□□□□ -0.08
CUX1-213ENST00000549414 PLPP5Q8NEB5 264 aa14.53□□□□□ -0.08
CUX1-213ENST00000549414 LIN37Q96GY3 246 aaPredicted RBP14.53□□□□□ -0.08
CUX1-213ENST00000549414 SULT4A1Q9BR01 284 aa14.53□□□□□ -0.08
CUX1-213ENST00000549414 PBDC1Q9BVG4 233 aa14.53□□□□□ -0.08
CUX1-213ENST00000549414 SNRNP200O75643 2136 aaKnown RBP14.53□□□□□ -0.08
CUX1-213ENST00000549414 SPAARA0A1B0GVQ0 90 aa14.53□□□□□ -0.08
CUX1-213ENST00000549414 OR2M5A3KFT3 312 aa14.53□□□□□ -0.08
CUX1-213ENST00000549414 TMIGD3P0DMS9 266 aaPredicted RBP14.53□□□□□ -0.08
CUX1-213ENST00000549414 ANKRD16Q6P6B7 361 aa14.53□□□□□ -0.08
CUX1-213ENST00000549414 SLC38A9Q8NBW4 561 aa14.53□□□□□ -0.08
CUX1-213ENST00000549414 MTFP1Q9UDX5 166 aa14.53□□□□□ -0.08
CUX1-213ENST00000549414 SLC23A1Q9UHI7 598 aa14.53□□□□□ -0.08
CUX1-213ENST00000549414 SLC6A1P30531 599 aa14.52□□□□□ -0.08
CUX1-213ENST00000549414 PPT1P50897 306 aa14.52□□□□□ -0.08
CUX1-213ENST00000549414 SPATA46Q5T0L3 261 aa14.52□□□□□ -0.08
CUX1-213ENST00000549414 WDR74Q6RFH5 385 aaPredicted RBP14.52□□□□□ -0.08
CUX1-213ENST00000549414 ZNF230Q9UIE0 474 aaPredicted RBP14.52□□□□□ -0.08
CUX1-213ENST00000549414 PCNX1Q96RV3 2341 aa14.52□□□□□ -0.08
CUX1-213ENST00000549414 A0A087WZY1 265 aa14.52□□□□□ -0.09
CUX1-213ENST00000549414 A0A1B0GTQ1 180 aa14.52□□□□□ -0.09
CUX1-213ENST00000549414 ACSM4P0C7M7 580 aa14.52□□□□□ -0.09
CUX1-213ENST00000549414 ZNF133P52736 654 aaPredicted RBP14.52□□□□□ -0.09
CUX1-213ENST00000549414 GVQW1Q8N7I0 195 aa14.52□□□□□ -0.09
CUX1-213ENST00000549414 EMG1Q92979 244 aaKnown RBP14.52□□□□□ -0.09
CUX1-213ENST00000549414 ZNF501Q96CX3 271 aaPredicted RBP14.52□□□□□ -0.09
CUX1-213ENST00000549414 FOXB1Q99853 325 aa14.52□□□□□ -0.09
CUX1-213ENST00000549414 PRKACAP17612 351 aa14.52□□□□□ -0.09
CUX1-213ENST00000549414 IL11P20809 199 aa14.52□□□□□ -0.09
CUX1-213ENST00000549414 LTBRP36941 435 aa14.52□□□□□ -0.09
CUX1-213ENST00000549414 CDC20BQ86Y33 519 aa14.52□□□□□ -0.09
CUX1-213ENST00000549414 ZNF687Q8N1G0 1237 aa14.52□□□□□ -0.09
CUX1-213ENST00000549414 NECAP2Q9NVZ3 263 aa14.52□□□□□ -0.09
CUX1-213ENST00000549414 THY1P04216 161 aa14.51□□□□□ -0.09
CUX1-213ENST00000549414 CXCL3P19876 107 aa14.51□□□□□ -0.09
CUX1-213ENST00000549414 PAN3Q58A45 887 aaKnown RBP14.51□□□□□ -0.09
CUX1-213ENST00000549414 BRICD5Q6PL45 260 aa14.51□□□□□ -0.09
CUX1-213ENST00000549414 OR11G2Q8NGC1 345 aa14.51□□□□□ -0.09
CUX1-213ENST00000549414 NUBPLQ8TB37 319 aa14.51□□□□□ -0.09
CUX1-213ENST00000549414 RBPMSQ93062 196 aaKnown RBP14.51□□□□□ -0.09
CUX1-213ENST00000549414 KCNJ16Q9NPI9 418 aa14.51□□□□□ -0.09
CUX1-213ENST00000549414 RPS10P5Q9NQ39 176 aa14.51□□□□□ -0.09
CUX1-213ENST00000549414 LHX6Q9UPM6 363 aa14.51□□□□□ -0.09
CUX1-213ENST00000549414 D6RAR5 112 aa14.51□□□□□ -0.09
CUX1-213ENST00000549414 HSD17B6O14756 317 aa14.51□□□□□ -0.09
CUX1-213ENST00000549414 IFNA2P01563 188 aa14.51□□□□□ -0.09
CUX1-213ENST00000549414 GALNSP34059 522 aa14.51□□□□□ -0.09
CUX1-213ENST00000549414 CAMK2BQ13554 666 aa14.51□□□□□ -0.09
CUX1-213ENST00000549414 HES3Q5TGS1 186 aa14.51□□□□□ -0.09
CUX1-213ENST00000549414 ZNF774Q6NX45 483 aa14.51□□□□□ -0.09
CUX1-213ENST00000549414 NHLRC1Q6VVB1 395 aa14.51□□□□□ -0.09
CUX1-213ENST00000549414 TMED6Q8WW62 240 aa14.51□□□□□ -0.09
CUX1-213ENST00000549414 SCARF2Q96GP6 870 aaPredicted RBP14.51□□□□□ -0.09
CUX1-213ENST00000549414 CNTD2Q9H8S5 307 aa14.51□□□□□ -0.09
CUX1-213ENST00000549414 ST3GAL6Q9Y274 331 aa14.51□□□□□ -0.09
CUX1-213ENST00000549414 TMEM200CA6NKL6 621 aa14.51□□□□□ -0.09
CUX1-213ENST00000549414 NDUFB6O95139 128 aa14.51□□□□□ -0.09
CUX1-213ENST00000549414 CELA2AP08217 269 aa14.51□□□□□ -0.09
CUX1-213ENST00000549414 S100A2P29034 98 aa14.51□□□□□ -0.09
CUX1-213ENST00000549414 EDDM3AQ14507 147 aa14.51□□□□□ -0.09
CUX1-213ENST00000549414 CARFQ8N187 725 aa14.51□□□□□ -0.09
CUX1-213ENST00000549414 PXT1Q8NFP0 134 aa14.51□□□□□ -0.09
CUX1-213ENST00000549414 PPP1R1CQ8WVI7 109 aa14.51□□□□□ -0.09
CUX1-213ENST00000549414 ARHGAP5-AS1Q96IT6 56 aa14.51□□□□□ -0.09
CUX1-213ENST00000549414 KCNJ15Q99712 375 aa14.51□□□□□ -0.09
CUX1-213ENST00000549414 FAM234AQ9H0X4 552 aa14.51□□□□□ -0.09
CUX1-213ENST00000549414 ZNF768Q9H5H4 540 aaKnown RBP14.51□□□□□ -0.09
CUX1-213ENST00000549414 TRGV8A0A0C4DH27 118 aa14.51□□□□□ -0.09
CUX1-213ENST00000549414 PRRG2O14669 202 aa14.51□□□□□ -0.09
CUX1-213ENST00000549414 OR5H8P0DN80 308 aa14.51□□□□□ -0.09
CUX1-213ENST00000549414 GSG1Q2KHT4 349 aa14.51□□□□□ -0.09
CUX1-213ENST00000549414 PLXDC2Q6UX71 529 aa14.51□□□□□ -0.09
CUX1-213ENST00000549414 LRRTM1Q86UE6 522 aa14.51□□□□□ -0.09
CUX1-213ENST00000549414 OR5M9Q8NGP3 310 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms