RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 AJUBAQ96IF1 538 aa10.37□□□□□ -0.75
SCAF11-208ENST00000546534 ATF6BQ99941 703 aa10.37□□□□□ -0.75
SCAF11-208ENST00000546534 FAM234AQ9H0X4 552 aa10.37□□□□□ -0.75
SCAF11-208ENST00000546534 IER3IP1Q9Y5U9 82 aa10.37□□□□□ -0.75
SCAF11-208ENST00000546534 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.36□□□□□ -0.75
SCAF11-208ENST00000546534 NDUFB3O43676 98 aa10.36□□□□□ -0.75
SCAF11-208ENST00000546534 CHST1O43916 411 aa10.36□□□□□ -0.75
SCAF11-208ENST00000546534 PTP4A3O75365 173 aa10.36□□□□□ -0.75
SCAF11-208ENST00000546534 NDUFB2O95178 105 aa10.36□□□□□ -0.75
SCAF11-208ENST00000546534 MUC1P15941 1255 aaPredicted RBP10.36□□□□□ -0.75
SCAF11-208ENST00000546534 AMY2BP19961 511 aa10.36□□□□□ -0.75
SCAF11-208ENST00000546534 PAX6P26367 422 aa10.36□□□□□ -0.75
SCAF11-208ENST00000546534 KDELR2P33947 212 aa10.36□□□□□ -0.75
SCAF11-208ENST00000546534 TPTEP56180 551 aa10.36□□□□□ -0.75
SCAF11-208ENST00000546534 HABP2Q14520 560 aaPredicted RBP10.36□□□□□ -0.75
SCAF11-208ENST00000546534 TSEN54Q7Z6J9 526 aaKnown RBP10.36□□□□□ -0.75
SCAF11-208ENST00000546534 C11orf53Q8IXP5 236 aa10.36□□□□□ -0.75
SCAF11-208ENST00000546534 WFDC9Q8NEX5 89 aa10.36□□□□□ -0.75
SCAF11-208ENST00000546534 SLC26A10Q8NG04 563 aa10.36□□□□□ -0.75
SCAF11-208ENST00000546534 TSPEARQ8WU66 669 aa10.36□□□□□ -0.75
SCAF11-208ENST00000546534 LRRC29Q8WV35 223 aa10.36□□□□□ -0.75
SCAF11-208ENST00000546534 H1FXQ92522 213 aaKnown RBP10.36□□□□□ -0.75
SCAF11-208ENST00000546534 NKX3-1Q99801 234 aaPredicted RBP10.36□□□□□ -0.75
SCAF11-208ENST00000546534 CITED2Q99967 270 aaPredicted RBP10.36□□□□□ -0.75
SCAF11-208ENST00000546534 PARD6BQ9BYG5 372 aa10.36□□□□□ -0.75
SCAF11-208ENST00000546534 NDEL1Q9GZM8 345 aa10.36□□□□□ -0.75
SCAF11-208ENST00000546534 NPFFR1Q9GZQ6 430 aa10.36□□□□□ -0.75
SCAF11-208ENST00000546534 RNPEPL1Q9HAU8 725 aa10.36□□□□□ -0.75
SCAF11-208ENST00000546534 RAB18Q9NP72 206 aa10.36□□□□□ -0.75
SCAF11-208ENST00000546534 PNRC2Q9NPJ4 139 aaKnown RBP10.36□□□□□ -0.75
SCAF11-208ENST00000546534 SERTAD4Q9NUC0 356 aa10.36□□□□□ -0.75
SCAF11-208ENST00000546534 C14orf119Q9NWQ9 140 aa10.36□□□□□ -0.75
SCAF11-208ENST00000546534 MRPL15Q9P015 296 aaKnown RBP10.36□□□□□ -0.75
SCAF11-208ENST00000546534 FRRS1LQ9P0K9 344 aa10.36□□□□□ -0.75
SCAF11-208ENST00000546534 SIGLEC7Q9Y286 467 aa10.36□□□□□ -0.75
SCAF11-208ENST00000546534 DNAH3Q8TD57 4116 aa10.35□□□□□ -0.75
SCAF11-208ENST00000546534 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.35□□□□□ -0.75
SCAF11-208ENST00000546534 M0R135 149 aa10.35□□□□□ -0.75
SCAF11-208ENST00000546534 BHLHE40O14503 412 aa10.35□□□□□ -0.75
SCAF11-208ENST00000546534 EREGO14944 169 aa10.35□□□□□ -0.75
SCAF11-208ENST00000546534 SELLP14151 372 aa10.35□□□□□ -0.75
SCAF11-208ENST00000546534 CRABP1P29762 137 aa10.35□□□□□ -0.75
SCAF11-208ENST00000546534 TGM4P49221 684 aa10.35□□□□□ -0.75
SCAF11-208ENST00000546534 SELENOWP63302 87 aa10.35□□□□□ -0.75
SCAF11-208ENST00000546534 CYLC2Q14093 348 aaPredicted RBP10.35□□□□□ -0.75
SCAF11-208ENST00000546534 LRRC75BQ2VPJ9 315 aa10.35□□□□□ -0.75
SCAF11-208ENST00000546534 SNAI3Q3KNW1 292 aa10.35□□□□□ -0.75
SCAF11-208ENST00000546534 NCR3LG1Q68D85 454 aa10.35□□□□□ -0.75
SCAF11-208ENST00000546534 HCP5Q6MZN7 132 aa10.35□□□□□ -0.75
SCAF11-208ENST00000546534 ERICH5Q6P6B1 374 aa10.35□□□□□ -0.75
SCAF11-208ENST00000546534 DNM1P34Q6PK57 102 aa10.35□□□□□ -0.75
SCAF11-208ENST00000546534 WDR86Q86TI4 376 aa10.35□□□□□ -0.75
SCAF11-208ENST00000546534 OR6V1Q8N148 313 aa10.35□□□□□ -0.75
SCAF11-208ENST00000546534 LNX2Q8N448 690 aa10.35□□□□□ -0.75
SCAF11-208ENST00000546534 OR2AJ1Q8NGZ0 328 aa10.35□□□□□ -0.75
SCAF11-208ENST00000546534 LZICQ8WZA0 190 aa10.35□□□□□ -0.75
SCAF11-208ENST00000546534 ZNF799Q96GE5 643 aa10.35□□□□□ -0.75
SCAF11-208ENST00000546534 GPX7Q96SL4 187 aaPredicted RBP10.35□□□□□ -0.75
SCAF11-208ENST00000546534 MEGF9Q9H1U4 602 aa10.35□□□□□ -0.75
SCAF11-208ENST00000546534 METTL8Q9H825 291 aaKnown RBP10.35□□□□□ -0.75
SCAF11-208ENST00000546534 ZNF702PQ9H963 129 aa10.35□□□□□ -0.75
SCAF11-208ENST00000546534 SRA1Q9HD15 236 aaKnown RBP10.35□□□□□ -0.75
SCAF11-208ENST00000546534 B9D1Q9UPM9 204 aa10.35□□□□□ -0.75
SCAF11-208ENST00000546534 WI2-2373I1.2A0A1W2PRP0 233 aa10.34□□□□□ -0.75
SCAF11-208ENST00000546534 M0R1W7 72 aa10.34□□□□□ -0.75
SCAF11-208ENST00000546534 TXNDC12O95881 172 aa10.34□□□□□ -0.75
SCAF11-208ENST00000546534 GHRHP01286 108 aa10.34□□□□□ -0.75
SCAF11-208ENST00000546534 IFNW1P05000 195 aa10.34□□□□□ -0.75
SCAF11-208ENST00000546534 FXYD6P3P58550 94 aa10.34□□□□□ -0.75
SCAF11-208ENST00000546534 CSNK2BP67870 215 aa10.34□□□□□ -0.75
SCAF11-208ENST00000546534 MZT1Q08AG7 82 aa10.34□□□□□ -0.75
SCAF11-208ENST00000546534 RFX4Q33E94 735 aa10.34□□□□□ -0.75
SCAF11-208ENST00000546534 LRRC10Q5BKY1 277 aa10.34□□□□□ -0.75
SCAF11-208ENST00000546534 GLYATL3Q5SZD4 288 aa10.34□□□□□ -0.75
SCAF11-208ENST00000546534 ATPAF1Q5TC12 328 aaPredicted RBP10.34□□□□□ -0.75
SCAF11-208ENST00000546534 PGBD2Q6P3X8 592 aa10.34□□□□□ -0.75
SCAF11-208ENST00000546534 VTCN1Q7Z7D3 282 aa10.34□□□□□ -0.75
SCAF11-208ENST00000546534 DTX3Q8N9I9 347 aa10.34□□□□□ -0.75
SCAF11-208ENST00000546534 OR5T2Q8NGG2 359 aa10.34□□□□□ -0.75
SCAF11-208ENST00000546534 OR56B2PQ8NGI1 322 aa10.34□□□□□ -0.75
SCAF11-208ENST00000546534 PIFOQ8TCI5 191 aa10.34□□□□□ -0.75
SCAF11-208ENST00000546534 WIPF2Q8TF74 440 aaPredicted RBP10.34□□□□□ -0.75
SCAF11-208ENST00000546534 TLCD1Q96CP7 247 aa10.34□□□□□ -0.75
SCAF11-208ENST00000546534 FAM46AQ96IP4 442 aaKnown RBP10.34□□□□□ -0.75
SCAF11-208ENST00000546534 SH3GL1Q99961 368 aa10.34□□□□□ -0.75
SCAF11-208ENST00000546534 CYB5R1Q9UHQ9 305 aa10.34□□□□□ -0.75
SCAF11-208ENST00000546534 SF3B6Q9Y3B4 125 aaKnown RBP10.34□□□□□ -0.75
SCAF11-208ENST00000546534 CAPN7Q9Y6W3 813 aa10.34□□□□□ -0.75
SCAF11-208ENST00000546534 FXYD1O00168 92 aa10.33□□□□□ -0.76
SCAF11-208ENST00000546534 GRK5P34947 590 aa10.33□□□□□ -0.76
SCAF11-208ENST00000546534 MSX2P35548 267 aaPredicted RBP10.33□□□□□ -0.76
SCAF11-208ENST00000546534 BMXP51813 675 aa10.33□□□□□ -0.76
SCAF11-208ENST00000546534 KRTAP10-11P60412 298 aa10.33□□□□□ -0.76
SCAF11-208ENST00000546534 CD69Q07108 199 aa10.33□□□□□ -0.76
SCAF11-208ENST00000546534 AANATQ16613 207 aa10.33□□□□□ -0.76
SCAF11-208ENST00000546534 SLC36A3Q495N2 470 aa10.33□□□□□ -0.76
SCAF11-208ENST00000546534 STUMQ69YW2 141 aa10.33□□□□□ -0.76
SCAF11-208ENST00000546534 WDR82Q6UXN9 313 aa10.33□□□□□ -0.76
SCAF11-208ENST00000546534 DPY19L2P2Q6ZN68 376 aa10.33□□□□□ -0.76
SCAF11-208ENST00000546534 RRM2BQ7LG56 351 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms