RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 ARPC2O15144 300 aa7.02□□□□□ -1.29
USP28-215ENST00000545608 ENSAO43768 121 aaKnown RBP7.02□□□□□ -1.29
USP28-215ENST00000545608 FCN3O75636 299 aa7.02□□□□□ -1.29
USP28-215ENST00000545608 PTBP3O95758 552 aaKnown RBP7.02□□□□□ -1.29
USP28-215ENST00000545608 FABP3P05413 133 aa7.02□□□□□ -1.29
USP28-215ENST00000545608 SFTPBP07988 381 aa7.02□□□□□ -1.29
USP28-215ENST00000545608 HSD17B1P14061 328 aa7.02□□□□□ -1.29
USP28-215ENST00000545608 ZNF823P16415 610 aa7.02□□□□□ -1.29
USP28-215ENST00000545608 OTX1P32242 354 aaPredicted RBP7.02□□□□□ -1.29
USP28-215ENST00000545608 IFNGR2P38484 337 aa7.02□□□□□ -1.29
USP28-215ENST00000545608 MXRA7P84157 204 aa7.02□□□□□ -1.29
USP28-215ENST00000545608 SRSF4Q08170 494 aaKnown RBP7.02□□□□□ -1.29
USP28-215ENST00000545608 GLYATL3Q5SZD4 288 aa7.02□□□□□ -1.29
USP28-215ENST00000545608 GPR157Q5UAW9 335 aa7.02□□□□□ -1.29
USP28-215ENST00000545608 RUSC1-AS1Q66K80 236 aa7.02□□□□□ -1.29
USP28-215ENST00000545608 Q6YL49 198 aa7.02□□□□□ -1.29
USP28-215ENST00000545608 ZNF826PQ6ZT77 177 aa7.02□□□□□ -1.29
USP28-215ENST00000545608 PIGWQ7Z7B1 504 aa7.02□□□□□ -1.29
USP28-215ENST00000545608 OR51L1Q8NGJ5 315 aa7.02□□□□□ -1.29
USP28-215ENST00000545608 SPTSSAQ969W0 71 aa7.02□□□□□ -1.29
USP28-215ENST00000545608 MCUR1Q96AQ8 359 aa7.02□□□□□ -1.29
USP28-215ENST00000545608 NSMCE2Q96MF7 247 aa7.02□□□□□ -1.29
USP28-215ENST00000545608 TBX15Q96SF7 602 aa7.02□□□□□ -1.29
USP28-215ENST00000545608 CDRT15Q96T59 188 aa7.02□□□□□ -1.29
USP28-215ENST00000545608 PCGF1Q9BSM1 259 aa7.02□□□□□ -1.29
USP28-215ENST00000545608 SLC22A4Q9H015 551 aa7.02□□□□□ -1.29
USP28-215ENST00000545608 SLITRK2Q9H156 845 aa7.02□□□□□ -1.29
USP28-215ENST00000545608 FN3KRPQ9HA64 309 aa7.02□□□□□ -1.29
USP28-215ENST00000545608 IL1RAPQ9NPH3 570 aa7.02□□□□□ -1.29
USP28-215ENST00000545608 ERVK-18Q9QC07 812 aa7.02□□□□□ -1.29
USP28-215ENST00000545608 MAGEL2Q9UJ55 1249 aa7.02□□□□□ -1.29
USP28-215ENST00000545608 KCNG2Q9UJ96 466 aa7.02□□□□□ -1.29
USP28-215ENST00000545608 SF3B6Q9Y3B4 125 aaKnown RBP7.02□□□□□ -1.29
USP28-215ENST00000545608 CENPVL3A0A0U1RRI6 287 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 FAM181BA6NEQ2 426 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 SRRM5B3KS81 715 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 ZNF879B4DU55 563 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 BHLHE40O14503 412 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 ADAM20O43506 726 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 SNX3O60493 162 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 GMDSO60547 372 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 GASTP01350 101 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 GRPP07492 148 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 SLC2A1P11166 492 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 MMP9P14780 707 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 CFHR2P36980 270 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 NPY4RP50391 375 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 PRKXP51817 358 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 HMGA2P52926 109 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 BPIFB3P59826 476 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 OR8B8Q15620 311 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 FIP1L1Q6UN15 594 aaKnown RBP7.01□□□□□ -1.29
USP28-215ENST00000545608 DRAM2Q6UX65 266 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 DCXRQ7Z4W1 244 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 ZDHHC21Q8IVQ6 265 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 PGAM4Q8N0Y7 254 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 KIR3DL3Q8N743 410 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 SLC37A3Q8NCC5 494 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 PROKR2Q8NFJ6 384 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 OR9Q2Q8NGE9 314 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 OR56B2PQ8NGI1 322 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 OR8D4Q8NGM9 314 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 OR9Q1Q8NGQ5 310 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 OR2T4Q8NH00 348 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 TECTBQ96PL2 329 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 BTBD10Q9BSF8 475 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 ADAT1Q9BUB4 502 aaKnown RBP7.01□□□□□ -1.29
USP28-215ENST00000545608 CHIAQ9BZP6 476 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 MMADHCQ9H3L0 296 aaPredicted RBP7.01□□□□□ -1.29
USP28-215ENST00000545608 MARCH7Q9H992 704 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 SMURF1Q9HCE7 757 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 NOX4Q9NPH5 578 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 CENPMQ9NSP4 180 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 C1orf123Q9NWV4 160 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 IL20Q9NYY1 176 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 ARL2BPQ9Y2Y0 163 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 N6AMT1Q9Y5N5 214 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 MMP24Q9Y5R2 645 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 LYVE1Q9Y5Y7 322 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 CDH10Q9Y6N8 788 aa7.01□□□□□ -1.29
USP28-215ENST00000545608 IGHV3OR15-7A0A075B7D8 119 aa7□□□□□ -1.29
USP28-215ENST00000545608 TRAV38-1A0A0B4J264 116 aa7□□□□□ -1.29
USP28-215ENST00000545608 OOEPA6NGQ2 149 aa7□□□□□ -1.29
USP28-215ENST00000545608 TNFRSF11BO00300 401 aa7□□□□□ -1.29
USP28-215ENST00000545608 P2RY10O00398 339 aa7□□□□□ -1.29
USP28-215ENST00000545608 ZNF593O00488 134 aaPredicted RBP7□□□□□ -1.29
USP28-215ENST00000545608 TOX4O94842 621 aa7□□□□□ -1.29
USP28-215ENST00000545608 LHBP01229 141 aa7□□□□□ -1.29
USP28-215ENST00000545608 GYPAP02724 150 aa7□□□□□ -1.29
USP28-215ENST00000545608 GYPBP06028 91 aa7□□□□□ -1.29
USP28-215ENST00000545608 LIPFP07098 398 aa7□□□□□ -1.29
USP28-215ENST00000545608 MELTFP08582 738 aa7□□□□□ -1.29
USP28-215ENST00000545608 SPARCP09486 303 aa7□□□□□ -1.29
USP28-215ENST00000545608 CLUP10909 449 aa7□□□□□ -1.29
USP28-215ENST00000545608 ARF6P62330 175 aa7□□□□□ -1.29
USP28-215ENST00000545608 DEFA6Q01524 100 aa7□□□□□ -1.29
USP28-215ENST00000545608 PPP1R8Q12972 351 aaKnown RBP7□□□□□ -1.29
USP28-215ENST00000545608 CRMP1Q14194 572 aa7□□□□□ -1.29
USP28-215ENST00000545608 KCNJ8Q15842 424 aa7□□□□□ -1.29
USP28-215ENST00000545608 PCK2Q16822 640 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms