RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 HAO2Q9NYQ3 351 aa12.8□□□□□ -0.36
LIMS1-215ENST00000544547 FAM221AA4D161 298 aa12.79□□□□□ -0.36
LIMS1-215ENST00000544547 RAB27BO00194 218 aa12.79□□□□□ -0.36
LIMS1-215ENST00000544547 EIF1BO60739 113 aaKnown RBP12.79□□□□□ -0.36
LIMS1-215ENST00000544547 FCGR2AP12318 317 aa12.79□□□□□ -0.36
LIMS1-215ENST00000544547 MDKP21741 143 aaPredicted RBP12.79□□□□□ -0.36
LIMS1-215ENST00000544547 PAX6P26367 422 aa12.79□□□□□ -0.36
LIMS1-215ENST00000544547 EIF1P41567 113 aaKnown RBP12.79□□□□□ -0.36
LIMS1-215ENST00000544547 CMTM1Q8IZ96 169 aa12.79□□□□□ -0.36
LIMS1-215ENST00000544547 LFNGQ8NES3 379 aa12.79□□□□□ -0.36
LIMS1-215ENST00000544547 OR8U1Q8NH10 309 aa12.79□□□□□ -0.36
LIMS1-215ENST00000544547 STT3BQ8TCJ2 826 aa12.79□□□□□ -0.36
LIMS1-215ENST00000544547 CPNE4Q96A23 557 aaPredicted RBP12.79□□□□□ -0.36
LIMS1-215ENST00000544547 SAT2Q96F10 170 aaPredicted RBP12.79□□□□□ -0.36
LIMS1-215ENST00000544547 FGF22Q9HCT0 170 aa12.79□□□□□ -0.36
LIMS1-215ENST00000544547 PTRH2Q9Y3E5 179 aaKnown RBP12.79□□□□□ -0.36
LIMS1-215ENST00000544547 ZNF236Q9UL36 1845 aa12.79□□□□□ -0.36
LIMS1-215ENST00000544547 A6NIZ1 184 aa12.79□□□□□ -0.36
LIMS1-215ENST00000544547 BRINP1O60477 761 aa12.79□□□□□ -0.36
LIMS1-215ENST00000544547 ZNF728P0DKX0 622 aa12.79□□□□□ -0.36
LIMS1-215ENST00000544547 RAP1BP61224 184 aa12.79□□□□□ -0.36
LIMS1-215ENST00000544547 SSBP1Q04837 148 aaKnown RBP12.79□□□□□ -0.36
LIMS1-215ENST00000544547 ZNF345Q14585 488 aa12.79□□□□□ -0.36
LIMS1-215ENST00000544547 ZNF528Q3MIS6 628 aa12.79□□□□□ -0.36
LIMS1-215ENST00000544547 ADAMTSL4Q6UY14 1074 aa12.79□□□□□ -0.36
LIMS1-215ENST00000544547 OR51E1Q8TCB6 317 aa12.79□□□□□ -0.36
LIMS1-215ENST00000544547 TAAR8Q969N4 342 aa12.79□□□□□ -0.36
LIMS1-215ENST00000544547 IP6K3Q96PC2 410 aa12.79□□□□□ -0.36
LIMS1-215ENST00000544547 STACQ99469 402 aa12.79□□□□□ -0.36
LIMS1-215ENST00000544547 PRRX2Q99811 253 aa12.79□□□□□ -0.36
LIMS1-215ENST00000544547 ZNF426Q9BUY5 554 aa12.79□□□□□ -0.36
LIMS1-215ENST00000544547 ABHD6Q9BV23 337 aa12.79□□□□□ -0.36
LIMS1-215ENST00000544547 GGACTQ9BVM4 153 aa12.79□□□□□ -0.36
LIMS1-215ENST00000544547 ATRXP46100 2492 aa12.79□□□□□ -0.36
LIMS1-215ENST00000544547 ZNF727A8MUV8 499 aa12.79□□□□□ -0.36
LIMS1-215ENST00000544547 H0Y8X5 98 aa12.79□□□□□ -0.36
LIMS1-215ENST00000544547 RBP2P50120 134 aa12.79□□□□□ -0.36
LIMS1-215ENST00000544547 ARL6IP1Q15041 203 aa12.79□□□□□ -0.36
LIMS1-215ENST00000544547 ARTNQ5T4W7 220 aa12.79□□□□□ -0.36
LIMS1-215ENST00000544547 ZAR1Q86SH2 424 aa12.79□□□□□ -0.36
LIMS1-215ENST00000544547 ZNF429Q86V71 674 aa12.79□□□□□ -0.36
LIMS1-215ENST00000544547 BATF2Q8N1L9 274 aa12.79□□□□□ -0.36
LIMS1-215ENST00000544547 CCDC71LQ8N9Z2 235 aa12.79□□□□□ -0.36
LIMS1-215ENST00000544547 OR4C3Q8NH37 302 aa12.79□□□□□ -0.36
LIMS1-215ENST00000544547 PIGTQ969N2 578 aa12.79□□□□□ -0.36
LIMS1-215ENST00000544547 SNX22Q96L94 193 aa12.79□□□□□ -0.36
LIMS1-215ENST00000544547 ZNF160Q9HCG1 818 aa12.79□□□□□ -0.36
LIMS1-215ENST00000544547 TRPM6Q9BX84 2022 aa12.79□□□□□ -0.36
LIMS1-215ENST00000544547 PPP5D1E7EU14 171 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 TGOLN2O43493 480 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 HPNP05981 417 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 CHRM2P08172 466 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 MSX1P28360 303 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 PNLIPRP2P54317 469 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 EEF1A1P68104 462 aaKnown RBP12.78□□□□□ -0.36
LIMS1-215ENST00000544547 MESP2Q0VG99 397 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 KIAA0895LQ68EN5 471 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 TMEM37Q8WXS4 190 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 SPIN2AQ99865 258 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 SPIN2BQ9BPZ2 258 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 OR10A5Q9H207 317 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 ZNF275Q9NSD4 429 aaPredicted RBP12.78□□□□□ -0.36
LIMS1-215ENST00000544547 FLRT3Q9NZU0 649 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 C2orf72A6NCS6 295 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 GREM1O60565 184 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 CLN5O75503 358 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 C1QL1O75973 258 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 FGF7P21781 194 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 FOXK1P85037 733 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 TLE4Q04727 773 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 ZNF266Q14584 549 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 ZNF74Q16587 644 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 PRSS35Q8N3Z0 413 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 SGCZQ96LD1 299 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 SEC14L6B5MCN3 397 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 ZNF749O43361 778 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 ZNF25P17030 456 aaPredicted RBP12.78□□□□□ -0.36
LIMS1-215ENST00000544547 EGR3Q06889 387 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 RTL10Q7L3V2 364 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 MISPQ8IVT2 679 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 ZDHHC22Q8N966 263 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 NPEPL1Q8NDH3 523 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 CCL4L1Q8NHW4 92 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 SLC25A31Q9H0C2 315 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 RCC2Q9P258 522 aaKnown RBP12.78□□□□□ -0.36
LIMS1-215ENST00000544547 TBC1D29Q9UFV1 150 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 OTOFQ9HC10 1997 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 GREB1Q4ZG55 1949 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 FTCDNL1E5RQL4 147 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 MFNGO00587 321 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 DPTQ07507 201 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 GPX8Q8TED1 209 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 PATE1Q8WXA2 126 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 RBMXL1Q96E39 390 aaKnown RBP12.78□□□□□ -0.36
LIMS1-215ENST00000544547 GPR61Q9BZJ8 451 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 WWTR1Q9GZV5 400 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 BCO1Q9HAY6 547 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 LAMP3Q9UQV4 416 aa12.78□□□□□ -0.36
LIMS1-215ENST00000544547 SPTBN2O15020 2390 aa12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms