RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-223	ENST00000544268	BEST3	Q8N1M1	668 aa		13.31	□□□□□ -0.28
CHFR-223	ENST00000544268	OR2Y1	Q8NGV0	311 aa		13.31	□□□□□ -0.28
CHFR-223	ENST00000544268	OR6N1	Q8NGY5	312 aa		13.31	□□□□□ -0.28
CHFR-223	ENST00000544268	NUBPL	Q8TB37	319 aa		13.31	□□□□□ -0.28
CHFR-223	ENST00000544268	GPR148	Q8TDV2	347 aa		13.31	□□□□□ -0.28
CHFR-223	ENST00000544268	ARL11	Q969Q4	196 aa		13.31	□□□□□ -0.28
CHFR-223	ENST00000544268	MCHR2	Q969V1	340 aa		13.31	□□□□□ -0.28
CHFR-223	ENST00000544268	CYYR1	Q96J86	154 aa		13.31	□□□□□ -0.28
CHFR-223	ENST00000544268	DCBLD2	Q96PD2	775 aa		13.31	□□□□□ -0.28
CHFR-223	ENST00000544268	ZPBP	Q9BS86	351 aa		13.31	□□□□□ -0.28
CHFR-223	ENST00000544268	COMMD4	Q9H0A8	199 aa		13.31	□□□□□ -0.28
CHFR-223	ENST00000544268	MED29	Q9NX70	200 aa		13.31	□□□□□ -0.28
CHFR-223	ENST00000544268	PADI1	Q9ULC6	663 aa		13.31	□□□□□ -0.28
CHFR-223	ENST00000544268	ZNF292	O60281	2723 aa		13.31	□□□□□ -0.28
CHFR-223	ENST00000544268	SDK2	Q58EX2	2172 aa		13.31	□□□□□ -0.28
CHFR-223	ENST00000544268	LOC102723996	A0A087X1L8	192 aa		13.31	□□□□□ -0.28
CHFR-223	ENST00000544268	LRP3	O75074	770 aa		13.31	□□□□□ -0.28
CHFR-223	ENST00000544268	GLS	O94925	669 aa	Predicted RBP	13.31	□□□□□ -0.28
CHFR-223	ENST00000544268	SLC25A4	P12235	298 aa		13.31	□□□□□ -0.28
CHFR-223	ENST00000544268	RPL27	P61353	136 aa	Known RBP	13.31	□□□□□ -0.28
CHFR-223	ENST00000544268	FABP9	Q0Z7S8	132 aa		13.31	□□□□□ -0.28
CHFR-223	ENST00000544268	C6orf15	Q6UXA7	325 aa	Predicted RBP	13.31	□□□□□ -0.28
CHFR-223	ENST00000544268	PHYHIP	Q92561	330 aa		13.31	□□□□□ -0.28
CHFR-223	ENST00000544268	OR8B4	Q96RC9	309 aa		13.31	□□□□□ -0.28
CHFR-223	ENST00000544268	DDA1	Q9BW61	102 aa		13.31	□□□□□ -0.28
CHFR-223	ENST00000544268	SLITRK2	Q9H156	845 aa		13.31	□□□□□ -0.28
CHFR-223	ENST00000544268	FOXJ2	Q9P0K8	574 aa		13.31	□□□□□ -0.28
CHFR-223	ENST00000544268	HS3ST3B1	Q9Y662	390 aa		13.31	□□□□□ -0.28
CHFR-223	ENST00000544268	ZFHX2	Q9C0A1	2572 aa	Predicted RBP	13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	TRAV18	A0A075B6X5	111 aa		13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	SMAD9	O15198	467 aa	Known RBP	13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	FADS1	O60427	444 aa		13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	NPIPB7	O75200	414 aa		13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	CTAG2	O75638	210 aa		13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	EIF2B1	Q14232	305 aa	Known RBP	13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	C2orf76	Q3KRA6	126 aa		13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	EMC4	Q5J8M3	183 aa		13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	LY6G6F	Q5SQ64	297 aa		13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	ZNF561	Q8N587	486 aa		13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	C15orf54	Q8N8G6	183 aa		13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	DEFB124	Q8NES8	71 aa		13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	OR4C16	Q8NGL9	310 aa		13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	OIT3	Q8WWZ8	545 aa		13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	MRI1	Q9BV20	369 aa		13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	ABHD6	Q9BV23	337 aa		13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	EMC6	Q9BV81	110 aa		13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	ALX4	Q9H161	411 aa	Predicted RBP	13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	UQCC1	Q9NVA1	299 aa		13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	STEAP1	Q9UHE8	339 aa		13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	CCDC187	A0A096LP49	1063 aa		13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	IGHV1-45	A0A0A0MS14	117 aa		13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	OR5H14	A6NHG9	310 aa		13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	TMEM212	A6NML5	194 aa		13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	PLPP3	O14495	311 aa		13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	EIF1AY	O14602	144 aa	Known RBP	13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	TXNL1	O43396	289 aa		13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	OR6A2	O95222	327 aa		13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	CALCB	P10092	127 aa		13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	CD79A	P11912	226 aa		13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	RPS18	P62269	152 aa	Known RBP	13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	SRSF3	P84103	164 aa	Known RBP	13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	EGR3	Q06889	387 aa		13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	PPA1	Q15181	289 aa		13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	SGCB	Q16585	318 aa		13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	ACOT7L	Q6ZUV0	252 aa		13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	TCTEX1D2	Q8WW35	142 aa		13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	SLC39A7	Q92504	469 aa		13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	CHST6	Q9GZX3	395 aa		13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	TREM1	Q9NP99	234 aa		13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	SMCO4	Q9NRQ5	59 aa		13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	TAS2R4	Q9NYW5	299 aa		13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	LRP12	Q9Y561	859 aa		13.3	□□□□□ -0.28
CHFR-223	ENST00000544268	CPAMD8	Q8IZJ3	1885 aa		13.29	□□□□□ -0.28
CHFR-223	ENST00000544268	DCDC2B	A2VCK2	349 aa		13.29	□□□□□ -0.28
CHFR-223	ENST00000544268		H3BML4	177 aa		13.29	□□□□□ -0.28
CHFR-223	ENST00000544268	CELA2A	P08217	269 aa		13.29	□□□□□ -0.28
CHFR-223	ENST00000544268	COX6A1	P12074	109 aa		13.29	□□□□□ -0.28
CHFR-223	ENST00000544268	PGC	P20142	388 aa		13.29	□□□□□ -0.28
CHFR-223	ENST00000544268	FOLR3	P41439	243 aa		13.29	□□□□□ -0.28
CHFR-223	ENST00000544268	EIF1AX	P47813	144 aa	Known RBP	13.29	□□□□□ -0.28
CHFR-223	ENST00000544268	SLC6A8	P48029	635 aa		13.29	□□□□□ -0.28
CHFR-223	ENST00000544268	RTN4RL2	Q86UN3	420 aa		13.29	□□□□□ -0.28
CHFR-223	ENST00000544268	GTPBP8	Q8N3Z3	284 aa	Predicted RBP	13.29	□□□□□ -0.28
CHFR-223	ENST00000544268	CT55	Q8WUE5	264 aa		13.29	□□□□□ -0.28
CHFR-223	ENST00000544268	PFDN5	Q99471	154 aa		13.29	□□□□□ -0.28
CHFR-223	ENST00000544268	SPRY4	Q9C004	299 aa		13.29	□□□□□ -0.28
CHFR-223	ENST00000544268	EMC9	Q9Y3B6	208 aa		13.29	□□□□□ -0.28
CHFR-223	ENST00000544268	ZFAND5	O76080	213 aa		13.29	□□□□□ -0.28
CHFR-223	ENST00000544268	TCN2	P20062	427 aa		13.29	□□□□□ -0.28
CHFR-223	ENST00000544268	AGA	P20933	346 aa		13.29	□□□□□ -0.28
CHFR-223	ENST00000544268	ANOS1	P23352	680 aa		13.29	□□□□□ -0.28
CHFR-223	ENST00000544268	OR7A5	Q15622	319 aa		13.29	□□□□□ -0.28
CHFR-223	ENST00000544268	CYB5R2	Q6BCY4	276 aa		13.29	□□□□□ -0.28
CHFR-223	ENST00000544268	C11orf87	Q6NUJ2	197 aa		13.29	□□□□□ -0.28
CHFR-223	ENST00000544268	ZNF227	Q86WZ6	799 aa		13.29	□□□□□ -0.28
CHFR-223	ENST00000544268	CCNL2	Q96S94	520 aa	Predicted RBP	13.29	□□□□□ -0.28
CHFR-223	ENST00000544268	ZNF700	Q9H0M5	742 aa		13.29	□□□□□ -0.28
CHFR-223	ENST00000544268	TAS2R8	Q9NYW2	309 aa		13.29	□□□□□ -0.28
CHFR-223	ENST00000544268	TREM2	Q9NZC2	230 aa		13.29	□□□□□ -0.28
CHFR-223	ENST00000544268	MYOT	Q9UBF9	498 aa		13.29	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms