RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 A0A0A6YYD4 124 aa12.16□□□□□ -0.46
VPS33A-208ENST00000543633 ZNF98A6NK75 572 aa12.16□□□□□ -0.46
VPS33A-208ENST00000543633 CA11O75493 328 aa12.16□□□□□ -0.46
VPS33A-208ENST00000543633 CSTBP04080 98 aaKnown RBP12.16□□□□□ -0.46
VPS33A-208ENST00000543633 PPM1FP49593 454 aaPredicted RBP12.16□□□□□ -0.46
VPS33A-208ENST00000543633 ARL6IP1Q15041 203 aa12.16□□□□□ -0.46
VPS33A-208ENST00000543633 MST1LQ2TV78 715 aa12.16□□□□□ -0.46
VPS33A-208ENST00000543633 C14orf28Q4W4Y0 310 aa12.16□□□□□ -0.46
VPS33A-208ENST00000543633 RTL6Q6ICC9 239 aa12.16□□□□□ -0.46
VPS33A-208ENST00000543633 GLIPR1L1Q6UWM5 242 aa12.16□□□□□ -0.46
VPS33A-208ENST00000543633 CLEC18BQ6UXF7 455 aa12.16□□□□□ -0.46
VPS33A-208ENST00000543633 DMBX1Q8NFW5 382 aa12.16□□□□□ -0.46
VPS33A-208ENST00000543633 TMED6Q8WW62 240 aa12.16□□□□□ -0.46
VPS33A-208ENST00000543633 HLA-CQ95604 372 aa12.16□□□□□ -0.46
VPS33A-208ENST00000543633 C5orf34Q96MH7 638 aa12.16□□□□□ -0.46
VPS33A-208ENST00000543633 SEMA5BQ9P283 1151 aa12.16□□□□□ -0.46
VPS33A-208ENST00000543633 A0A1B0GX78 115 aa12.15□□□□□ -0.46
VPS33A-208ENST00000543633 VSTM2BA6NLU5 285 aa12.15□□□□□ -0.46
VPS33A-208ENST00000543633 MSX1P28360 303 aa12.15□□□□□ -0.46
VPS33A-208ENST00000543633 ALDH3B1P43353 468 aa12.15□□□□□ -0.46
VPS33A-208ENST00000543633 CAV2P51636 162 aa12.15□□□□□ -0.46
VPS33A-208ENST00000543633 ARHGDIBP52566 201 aa12.15□□□□□ -0.46
VPS33A-208ENST00000543633 IL15RAQ13261 267 aa12.15□□□□□ -0.46
VPS33A-208ENST00000543633 PPA1Q15181 289 aa12.15□□□□□ -0.46
VPS33A-208ENST00000543633 KCNMB1Q16558 191 aa12.15□□□□□ -0.46
VPS33A-208ENST00000543633 ZNF585AQ6P3V2 769 aa12.15□□□□□ -0.46
VPS33A-208ENST00000543633 COX15Q7KZN9 410 aa12.15□□□□□ -0.46
VPS33A-208ENST00000543633 D2HGDHQ8N465 521 aa12.15□□□□□ -0.46
VPS33A-208ENST00000543633 FAM89BQ8N5H3 189 aa12.15□□□□□ -0.46
VPS33A-208ENST00000543633 POC1AQ8NBT0 407 aa12.15□□□□□ -0.46
VPS33A-208ENST00000543633 NOXO1Q8NFA2 376 aa12.15□□□□□ -0.46
VPS33A-208ENST00000543633 SSC4DQ8WTU2 575 aa12.15□□□□□ -0.46
VPS33A-208ENST00000543633 ARL5BQ96KC2 179 aa12.15□□□□□ -0.46
VPS33A-208ENST00000543633 NRIP2Q9BQI9 281 aa12.15□□□□□ -0.46
VPS33A-208ENST00000543633 SLC26A1Q9H2B4 701 aa12.15□□□□□ -0.46
VPS33A-208ENST00000543633 TREM1Q9NP99 234 aa12.15□□□□□ -0.46
VPS33A-208ENST00000543633 SERINC1Q9NRX5 453 aa12.15□□□□□ -0.46
VPS33A-208ENST00000543633 DHCR7Q9UBM7 475 aaKnown RBP12.15□□□□□ -0.46
VPS33A-208ENST00000543633 A0A1W2PR77 199 aa12.15□□□□□ -0.47
VPS33A-208ENST00000543633 MPIG6BO95866 241 aa12.15□□□□□ -0.47
VPS33A-208ENST00000543633 IFNA4P05014 189 aa12.15□□□□□ -0.47
VPS33A-208ENST00000543633 ARL4DP49703 201 aa12.15□□□□□ -0.47
VPS33A-208ENST00000543633 BIDP55957 195 aa12.15□□□□□ -0.47
VPS33A-208ENST00000543633 RNF4P78317 190 aa12.15□□□□□ -0.47
VPS33A-208ENST00000543633 ZNF528Q3MIS6 628 aa12.15□□□□□ -0.47
VPS33A-208ENST00000543633 PLAC9Q5JTB6 97 aa12.15□□□□□ -0.47
VPS33A-208ENST00000543633 DOK3Q7L591 496 aa12.15□□□□□ -0.47
VPS33A-208ENST00000543633 OR2AJ1Q8NGZ0 328 aa12.15□□□□□ -0.47
VPS33A-208ENST00000543633 OR1L3Q8NH93 324 aa12.15□□□□□ -0.47
VPS33A-208ENST00000543633 OR51E1Q8TCB6 317 aa12.15□□□□□ -0.47
VPS33A-208ENST00000543633 EMG1Q92979 244 aaKnown RBP12.15□□□□□ -0.47
VPS33A-208ENST00000543633 TMEM41AQ96HV5 264 aa12.15□□□□□ -0.47
VPS33A-208ENST00000543633 NECAB3Q96P71 396 aaPredicted RBP12.15□□□□□ -0.47
VPS33A-208ENST00000543633 NICN1Q9BSH3 213 aa12.15□□□□□ -0.47
VPS33A-208ENST00000543633 FOXQ1Q9C009 403 aa12.15□□□□□ -0.47
VPS33A-208ENST00000543633 SLC5A7Q9GZV3 580 aa12.15□□□□□ -0.47
VPS33A-208ENST00000543633 TLNRD1Q9H1K6 362 aa12.15□□□□□ -0.47
VPS33A-208ENST00000543633 MED29Q9NX70 200 aa12.15□□□□□ -0.47
VPS33A-208ENST00000543633 RCC2Q9P258 522 aaKnown RBP12.15□□□□□ -0.47
VPS33A-208ENST00000543633 OSGIN2Q9Y236 505 aa12.15□□□□□ -0.47
VPS33A-208ENST00000543633 LHFPL6Q9Y693 200 aa12.15□□□□□ -0.47
VPS33A-208ENST00000543633 ZNF705EA8MWA4 302 aaPredicted RBP12.14□□□□□ -0.47
VPS33A-208ENST00000543633 LMO7DNF2Z398 122 aa12.14□□□□□ -0.47
VPS33A-208ENST00000543633 FOLR2P14207 255 aa12.14□□□□□ -0.47
VPS33A-208ENST00000543633 ZNF84P51523 738 aa12.14□□□□□ -0.47
VPS33A-208ENST00000543633 SUPT4H1P63272 117 aaKnown RBP12.14□□□□□ -0.47
VPS33A-208ENST00000543633 AVPI1Q5T686 147 aa12.14□□□□□ -0.47
VPS33A-208ENST00000543633 PTCRAQ6ISU1 281 aaPredicted RBP12.14□□□□□ -0.47
VPS33A-208ENST00000543633 KMT5CQ86Y97 462 aa12.14□□□□□ -0.47
VPS33A-208ENST00000543633 WDFY1Q8IWB7 410 aa12.14□□□□□ -0.47
VPS33A-208ENST00000543633 ZC3H10Q96K80 434 aaKnown RBP12.14□□□□□ -0.47
VPS33A-208ENST00000543633 MRGPRX4Q96LA9 322 aa12.14□□□□□ -0.47
VPS33A-208ENST00000543633 TGIF2Q9GZN2 237 aa12.14□□□□□ -0.47
VPS33A-208ENST00000543633 PHF3Q92576 2039 aaKnown RBP12.13□□□□□ -0.47
VPS33A-208ENST00000543633 IGLV3-32A0A0A0MS00 114 aa12.13□□□□□ -0.47
VPS33A-208ENST00000543633 RHPN2P1A8MT19 583 aa12.13□□□□□ -0.47
VPS33A-208ENST00000543633 IGHG1P01857 330 aa12.13□□□□□ -0.47
VPS33A-208ENST00000543633 GAPDHP04406 335 aaKnown RBP12.13□□□□□ -0.47
VPS33A-208ENST00000543633 GIMD1P0DJR0 217 aa12.13□□□□□ -0.47
VPS33A-208ENST00000543633 SRFP11831 508 aa12.13□□□□□ -0.47
VPS33A-208ENST00000543633 PRF1P14222 555 aa12.13□□□□□ -0.47
VPS33A-208ENST00000543633 FOSL2P15408 326 aa12.13□□□□□ -0.47
VPS33A-208ENST00000543633 AMY2BP19961 511 aa12.13□□□□□ -0.47
VPS33A-208ENST00000543633 CD38P28907 300 aa12.13□□□□□ -0.47
VPS33A-208ENST00000543633 FOXF1Q12946 379 aa12.13□□□□□ -0.47
VPS33A-208ENST00000543633 TMEM88Q6PEY1 159 aa12.13□□□□□ -0.47
VPS33A-208ENST00000543633 CBLN2Q8IUK8 224 aa12.13□□□□□ -0.47
VPS33A-208ENST00000543633 BOLLQ8N9W6 283 aaKnown RBP12.13□□□□□ -0.47
VPS33A-208ENST00000543633 KDF1Q8NAX2 398 aaPredicted RBP12.13□□□□□ -0.47
VPS33A-208ENST00000543633 OR8B12Q8NGG6 310 aa12.13□□□□□ -0.47
VPS33A-208ENST00000543633 RTBDNQ9BSG5 229 aaPredicted RBP12.13□□□□□ -0.47
VPS33A-208ENST00000543633 RNF122Q9H9V4 155 aa12.13□□□□□ -0.47
VPS33A-208ENST00000543633 ACKR4Q9NPB9 350 aa12.13□□□□□ -0.47
VPS33A-208ENST00000543633 OR5AC2Q9NZP5 309 aa12.13□□□□□ -0.47
VPS33A-208ENST00000543633 B3GAT1Q9P2W7 334 aa12.13□□□□□ -0.47
VPS33A-208ENST00000543633 SUSD2Q9UGT4 822 aa12.13□□□□□ -0.47
VPS33A-208ENST00000543633 POLR1DQ9Y2S0 133 aa12.13□□□□□ -0.47
VPS33A-208ENST00000543633 ADAMTS20P59510 1910 aa12.13□□□□□ -0.47
VPS33A-208ENST00000543633 MSGN1A6NI15 193 aa12.13□□□□□ -0.47
VPS33A-208ENST00000543633 SOCS1O15524 211 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms