RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 MAPRE2Q15555 327 aa14.56□□□□□ -0.08
CLSTN3-214ENST00000542663 MICBQ29980 383 aa14.56□□□□□ -0.08
CLSTN3-214ENST00000542663 CYP4Z1Q86W10 505 aa14.56□□□□□ -0.08
CLSTN3-214ENST00000542663 CMTM4Q8IZR5 234 aa14.56□□□□□ -0.08
CLSTN3-214ENST00000542663 LNX2Q8N448 690 aa14.56□□□□□ -0.08
CLSTN3-214ENST00000542663 C8orf46Q8TAG6 207 aa14.56□□□□□ -0.08
CLSTN3-214ENST00000542663 FUZQ9BT04 418 aa14.56□□□□□ -0.08
CLSTN3-214ENST00000542663 DCTN5Q9BTE1 182 aa14.56□□□□□ -0.08
CLSTN3-214ENST00000542663 TOR3AQ9H497 397 aa14.56□□□□□ -0.08
CLSTN3-214ENST00000542663 C14orf119Q9NWQ9 140 aa14.56□□□□□ -0.08
CLSTN3-214ENST00000542663 MEIOCA2RUB1 952 aa14.55□□□□□ -0.08
CLSTN3-214ENST00000542663 MEGF11A6BM72 1044 aa14.55□□□□□ -0.08
CLSTN3-214ENST00000542663 NME4O00746 187 aa14.55□□□□□ -0.08
CLSTN3-214ENST00000542663 ACOT8O14734 319 aa14.55□□□□□ -0.08
CLSTN3-214ENST00000542663 HLA-DQA2P01906 255 aa14.55□□□□□ -0.08
CLSTN3-214ENST00000542663 TROVE2P10155 538 aaKnown RBP eCLIP14.55□□□□□ -0.08
CLSTN3-214ENST00000542663 SELLP14151 372 aa14.55□□□□□ -0.08
CLSTN3-214ENST00000542663 TGM4P49221 684 aa14.55□□□□□ -0.08
CLSTN3-214ENST00000542663 OXLD1Q5BKU9 147 aa14.55□□□□□ -0.08
CLSTN3-214ENST00000542663 WDR82Q6UXN9 313 aa14.55□□□□□ -0.08
CLSTN3-214ENST00000542663 FANK1Q8TC84 345 aa14.55□□□□□ -0.08
CLSTN3-214ENST00000542663 C17orf50Q8WW18 174 aa14.55□□□□□ -0.08
CLSTN3-214ENST00000542663 SPTSSAQ969W0 71 aa14.55□□□□□ -0.08
CLSTN3-214ENST00000542663 PPP1R14AQ96A00 147 aa14.55□□□□□ -0.08
CLSTN3-214ENST00000542663 RCN3Q96D15 328 aa14.55□□□□□ -0.08
CLSTN3-214ENST00000542663 OR52D1Q9H346 318 aa14.55□□□□□ -0.08
CLSTN3-214ENST00000542663 RNPEPL1Q9HAU8 725 aa14.55□□□□□ -0.08
CLSTN3-214ENST00000542663 NDUFAF4Q9P032 175 aa14.55□□□□□ -0.08
CLSTN3-214ENST00000542663 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP14.54□□□□□ -0.08
CLSTN3-214ENST00000542663 H3BUX3 64 aa14.54□□□□□ -0.08
CLSTN3-214ENST00000542663 PAHP00439 452 aa14.54□□□□□ -0.08
CLSTN3-214ENST00000542663 KIR2DS4P43632 304 aa14.54□□□□□ -0.08
CLSTN3-214ENST00000542663 LOXL3P58215 753 aa14.54□□□□□ -0.08
CLSTN3-214ENST00000542663 CSNK2BP67870 215 aa14.54□□□□□ -0.08
CLSTN3-214ENST00000542663 CRIP3Q6Q6R5 217 aa14.54□□□□□ -0.08
CLSTN3-214ENST00000542663 DRAM2Q6UX65 266 aa14.54□□□□□ -0.08
CLSTN3-214ENST00000542663 SLC36A1Q7Z2H8 476 aa14.54□□□□□ -0.08
CLSTN3-214ENST00000542663 KLHDC1Q8N7A1 406 aa14.54□□□□□ -0.08
CLSTN3-214ENST00000542663 BEND2Q8NDZ0 799 aa14.54□□□□□ -0.08
CLSTN3-214ENST00000542663 SDR9C7Q8NEX9 313 aa14.54□□□□□ -0.08
CLSTN3-214ENST00000542663 ZNRF4Q8WWF5 429 aa14.54□□□□□ -0.08
CLSTN3-214ENST00000542663 ITPKCQ96DU7 683 aa14.54□□□□□ -0.08
CLSTN3-214ENST00000542663 AJUBAQ96IF1 538 aa14.54□□□□□ -0.08
CLSTN3-214ENST00000542663 DHRS1Q96LJ7 313 aa14.54□□□□□ -0.08
CLSTN3-214ENST00000542663 GSTA4O15217 222 aa14.53□□□□□ -0.08
CLSTN3-214ENST00000542663 NDUFB3O43676 98 aa14.53□□□□□ -0.08
CLSTN3-214ENST00000542663 DIRAS1O95057 198 aa14.53□□□□□ -0.08
CLSTN3-214ENST00000542663 SLC2A1P11166 492 aa14.53□□□□□ -0.08
CLSTN3-214ENST00000542663 RHCEP18577 417 aa14.53□□□□□ -0.08
CLSTN3-214ENST00000542663 SLC6A6P31641 620 aa14.53□□□□□ -0.08
CLSTN3-214ENST00000542663 UBE2E1P51965 193 aa14.53□□□□□ -0.08
CLSTN3-214ENST00000542663 MZT1Q08AG7 82 aa14.53□□□□□ -0.08
CLSTN3-214ENST00000542663 IKZF1Q13422 519 aa14.53□□□□□ -0.08
CLSTN3-214ENST00000542663 LYPD4Q6UWN0 246 aa14.53□□□□□ -0.08
CLSTN3-214ENST00000542663 LYG1Q8N1E2 194 aa14.53□□□□□ -0.08
CLSTN3-214ENST00000542663 OR1M1Q8NGA1 313 aa14.53□□□□□ -0.08
CLSTN3-214ENST00000542663 OR52J3Q8NH60 311 aa14.53□□□□□ -0.08
CLSTN3-214ENST00000542663 SPSB4Q96A44 273 aa14.53□□□□□ -0.08
CLSTN3-214ENST00000542663 C7orf34Q96L11 122 aa14.53□□□□□ -0.08
CLSTN3-214ENST00000542663 SSX3Q99909 188 aa14.53□□□□□ -0.08
CLSTN3-214ENST00000542663 PPP1R3EQ9H7J1 279 aa14.53□□□□□ -0.08
CLSTN3-214ENST00000542663 MRGBPQ9NV56 204 aa14.53□□□□□ -0.08
CLSTN3-214ENST00000542663 AURKAIP1Q9NWT8 199 aaPredicted RBP14.53□□□□□ -0.08
CLSTN3-214ENST00000542663 KCNG2Q9UJ96 466 aa14.53□□□□□ -0.08
CLSTN3-214ENST00000542663 AP3M1Q9Y2T2 418 aa14.53□□□□□ -0.08
CLSTN3-214ENST00000542663 MAB21L2Q9Y586 359 aa14.53□□□□□ -0.08
CLSTN3-214ENST00000542663 NCK1P16333 377 aa14.52□□□□□ -0.09
CLSTN3-214ENST00000542663 GSK3BP49841 420 aa14.52□□□□□ -0.09
CLSTN3-214ENST00000542663 SF3A3Q12874 501 aaKnown RBP eCLIP14.52□□□□□ -0.09
CLSTN3-214ENST00000542663 LY6EQ16553 131 aa14.52□□□□□ -0.09
CLSTN3-214ENST00000542663 ATPAF1Q5TC12 328 aaPredicted RBP14.52□□□□□ -0.09
CLSTN3-214ENST00000542663 STUMQ69YW2 141 aa14.52□□□□□ -0.09
CLSTN3-214ENST00000542663 HCP5Q6MZN7 132 aa14.52□□□□□ -0.09
CLSTN3-214ENST00000542663 C11orf88Q6PI97 169 aa14.52□□□□□ -0.09
CLSTN3-214ENST00000542663 DPY19L4Q7Z388 723 aa14.52□□□□□ -0.09
CLSTN3-214ENST00000542663 ARPINQ7Z6K5 226 aa14.52□□□□□ -0.09
CLSTN3-214ENST00000542663 OR5T2Q8NGG2 359 aa14.52□□□□□ -0.09
CLSTN3-214ENST00000542663 OR8S1Q8NH09 359 aa14.52□□□□□ -0.09
CLSTN3-214ENST00000542663 RORBQ92753 470 aa14.52□□□□□ -0.09
CLSTN3-214ENST00000542663 C12orf43Q96C57 262 aaKnown RBP14.52□□□□□ -0.09
CLSTN3-214ENST00000542663 IFT27Q9BW83 186 aa14.52□□□□□ -0.09
CLSTN3-214ENST00000542663 TVP23AA6NH52 213 aa14.51□□□□□ -0.09
CLSTN3-214ENST00000542663 TFF1P04155 84 aa14.51□□□□□ -0.09
CLSTN3-214ENST00000542663 ZNF823P16415 610 aa14.51□□□□□ -0.09
CLSTN3-214ENST00000542663 PYCR1P32322 319 aa14.51□□□□□ -0.09
CLSTN3-214ENST00000542663 GRK5P34947 590 aa14.51□□□□□ -0.09
CLSTN3-214ENST00000542663 PRKXP51817 358 aa14.51□□□□□ -0.09
CLSTN3-214ENST00000542663 SLC7A2P52569 658 aa14.51□□□□□ -0.09
CLSTN3-214ENST00000542663 FAM3AP98173 230 aa14.51□□□□□ -0.09
CLSTN3-214ENST00000542663 ACSM1Q08AH1 577 aa14.51□□□□□ -0.09
CLSTN3-214ENST00000542663 LRRC10Q5BKY1 277 aa14.51□□□□□ -0.09
CLSTN3-214ENST00000542663 CGB2Q6NT52 195 aa14.51□□□□□ -0.09
CLSTN3-214ENST00000542663 C8orf82Q6P1X6 216 aaPredicted RBP14.51□□□□□ -0.09
CLSTN3-214ENST00000542663 FAM86B1Q8N7N1 296 aa14.51□□□□□ -0.09
CLSTN3-214ENST00000542663 OR4C13Q8NGP0 309 aa14.51□□□□□ -0.09
CLSTN3-214ENST00000542663 H1FXQ92522 213 aaKnown RBP14.51□□□□□ -0.09
CLSTN3-214ENST00000542663 DDOQ99489 341 aa14.51□□□□□ -0.09
CLSTN3-214ENST00000542663 NSRP1Q9H0G5 558 aaKnown RBP14.51□□□□□ -0.09
CLSTN3-214ENST00000542663 TLNRD1Q9H1K6 362 aa14.51□□□□□ -0.09
CLSTN3-214ENST00000542663 OPA3Q9H6K4 179 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms