RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 PHB2Q99623 299 aa11.98□□□□□ -0.49
PTPN1-202ENST00000541713 FAM96BQ9Y3D0 163 aa11.98□□□□□ -0.49
PTPN1-202ENST00000541713 TNFSF11O14788 317 aa11.97□□□□□ -0.49
PTPN1-202ENST00000541713 FARS2O95363 451 aaKnown RBP11.97□□□□□ -0.49
PTPN1-202ENST00000541713 ZNF735P0CB33 412 aa11.97□□□□□ -0.49
PTPN1-202ENST00000541713 ZNF260Q3ZCT1 412 aa11.97□□□□□ -0.49
PTPN1-202ENST00000541713 PNLDC1Q8NA58 520 aaKnown RBP11.97□□□□□ -0.49
PTPN1-202ENST00000541713 RNF133Q8WVZ7 376 aa11.97□□□□□ -0.49
PTPN1-202ENST00000541713 GAREM1Q9H706 876 aa11.97□□□□□ -0.49
PTPN1-202ENST00000541713 TREM1Q9NP99 234 aa11.97□□□□□ -0.49
PTPN1-202ENST00000541713 RAB22AQ9UL26 194 aa11.97□□□□□ -0.49
PTPN1-202ENST00000541713 MEGF11A6BM72 1044 aa11.97□□□□□ -0.49
PTPN1-202ENST00000541713 TOR1AO14656 332 aa11.97□□□□□ -0.49
PTPN1-202ENST00000541713 SHOXO15266 292 aa11.97□□□□□ -0.49
PTPN1-202ENST00000541713 UBCP0CG48 685 aaKnown RBP11.97□□□□□ -0.49
PTPN1-202ENST00000541713 APOBEC1P41238 236 aaKnown RBP11.97□□□□□ -0.49
PTPN1-202ENST00000541713 ZNF468Q5VIY5 522 aaPredicted RBP11.97□□□□□ -0.49
PTPN1-202ENST00000541713 OR2W3Q7Z3T1 314 aa11.97□□□□□ -0.49
PTPN1-202ENST00000541713 TMEM229BQ8NBD8 167 aa11.97□□□□□ -0.49
PTPN1-202ENST00000541713 AKR7LQ8NHP1 331 aa11.97□□□□□ -0.49
PTPN1-202ENST00000541713 MFSD8Q8NHS3 518 aa11.97□□□□□ -0.49
PTPN1-202ENST00000541713 MAFAQ8NHW3 353 aaPredicted RBP11.97□□□□□ -0.49
PTPN1-202ENST00000541713 MVB12AQ96EY5 273 aa11.97□□□□□ -0.49
PTPN1-202ENST00000541713 LRRC46Q96FV0 321 aa11.97□□□□□ -0.49
PTPN1-202ENST00000541713 FN3KRPQ9HA64 309 aa11.97□□□□□ -0.49
PTPN1-202ENST00000541713 CYB5R1Q9UHQ9 305 aa11.97□□□□□ -0.49
PTPN1-202ENST00000541713 WIF1Q9Y5W5 379 aa11.97□□□□□ -0.49
PTPN1-202ENST00000541713 IGHV5-10-1A0A0J9YXX1 117 aa11.96□□□□□ -0.49
PTPN1-202ENST00000541713 RFPL4AA6NLU0 287 aa11.96□□□□□ -0.49
PTPN1-202ENST00000541713 RFPL4AL1F8VTS6 287 aa11.96□□□□□ -0.49
PTPN1-202ENST00000541713 GPR31O00270 319 aa11.96□□□□□ -0.49
PTPN1-202ENST00000541713 SSX5O60225 188 aa11.96□□□□□ -0.49
PTPN1-202ENST00000541713 CCL2P13500 99 aa11.96□□□□□ -0.49
PTPN1-202ENST00000541713 MC2RQ01718 297 aa11.96□□□□□ -0.49
PTPN1-202ENST00000541713 RHBDD2Q6NTF9 364 aa11.96□□□□□ -0.49
PTPN1-202ENST00000541713 OGFOD3Q6PK18 319 aa11.96□□□□□ -0.49
PTPN1-202ENST00000541713 MRGPRFQ96AM1 343 aa11.96□□□□□ -0.49
PTPN1-202ENST00000541713 MFRPQ9BY79 579 aa11.96□□□□□ -0.49
PTPN1-202ENST00000541713 REG4Q9BYZ8 158 aa11.96□□□□□ -0.49
PTPN1-202ENST00000541713 SLC6A15Q9H2J7 730 aa11.96□□□□□ -0.49
PTPN1-202ENST00000541713 NUP50Q9UKX7 468 aa11.96□□□□□ -0.49
PTPN1-202ENST00000541713 MFSD2BA6NFX1 497 aa11.96□□□□□ -0.49
PTPN1-202ENST00000541713 MSGN1A6NI15 193 aa11.96□□□□□ -0.49
PTPN1-202ENST00000541713 NPIPA2E9PIF3 369 aa11.96□□□□□ -0.49
PTPN1-202ENST00000541713 NPIPA3F8WFD2 350 aa11.96□□□□□ -0.49
PTPN1-202ENST00000541713 SRSF3P84103 164 aaKnown RBP11.96□□□□□ -0.49
PTPN1-202ENST00000541713 ZNF169Q14929 603 aaPredicted RBP11.96□□□□□ -0.49
PTPN1-202ENST00000541713 PLPPR5Q32ZL2 321 aa11.96□□□□□ -0.49
PTPN1-202ENST00000541713 COL13A1Q5TAT6 717 aaPredicted RBP11.96□□□□□ -0.49
PTPN1-202ENST00000541713 C11orf87Q6NUJ2 197 aa11.96□□□□□ -0.49
PTPN1-202ENST00000541713 BPIFCQ8NFQ6 507 aa11.96□□□□□ -0.49
PTPN1-202ENST00000541713 ZC3H10Q96K80 434 aaKnown RBP11.96□□□□□ -0.49
PTPN1-202ENST00000541713 PARPBPQ9NWS1 579 aa11.96□□□□□ -0.49
PTPN1-202ENST00000541713 GPN3Q9UHW5 284 aaPredicted RBP11.96□□□□□ -0.49
PTPN1-202ENST00000541713 PIGLQ9Y2B2 252 aa11.96□□□□□ -0.49
PTPN1-202ENST00000541713 B3GALT1Q9Y5Z6 326 aa11.96□□□□□ -0.49
PTPN1-202ENST00000541713 DOCK10Q96BY6 2186 aa11.96□□□□□ -0.5
PTPN1-202ENST00000541713 BDP1A6H8Y1 2624 aa11.96□□□□□ -0.5
PTPN1-202ENST00000541713 H3BUI4 141 aa11.96□□□□□ -0.5
PTPN1-202ENST00000541713 NAGAP17050 411 aa11.96□□□□□ -0.5
PTPN1-202ENST00000541713 IGFBP3P17936 291 aaPredicted RBP11.96□□□□□ -0.5
PTPN1-202ENST00000541713 FAM166AQ6J272 317 aa11.96□□□□□ -0.5
PTPN1-202ENST00000541713 SLC51BQ86UW2 128 aa11.96□□□□□ -0.5
PTPN1-202ENST00000541713 OR5H2Q8NGV7 314 aa11.96□□□□□ -0.5
PTPN1-202ENST00000541713 FOXRED1Q96CU9 486 aaPredicted RBP11.96□□□□□ -0.5
PTPN1-202ENST00000541713 MRPS17Q9Y2R5 130 aaKnown RBP11.96□□□□□ -0.5
PTPN1-202ENST00000541713 POLEQ07864 2286 aa11.96□□□□□ -0.5
PTPN1-202ENST00000541713 D6RAR5 112 aa11.95□□□□□ -0.5
PTPN1-202ENST00000541713 IGLV3-19P01714 112 aa11.95□□□□□ -0.5
PTPN1-202ENST00000541713 HOXD4P09016 255 aaPredicted RBP11.95□□□□□ -0.5
PTPN1-202ENST00000541713 NOVA1P51513 510 aaKnown RBP11.95□□□□□ -0.5
PTPN1-202ENST00000541713 TMEM50BP56557 158 aa11.95□□□□□ -0.5
PTPN1-202ENST00000541713 HLA-BQ31612 363 aa11.95□□□□□ -0.5
PTPN1-202ENST00000541713 KIAA2026Q5HYC2 2103 aa11.95□□□□□ -0.5
PTPN1-202ENST00000541713 ZNF585AQ6P3V2 769 aa11.95□□□□□ -0.5
PTPN1-202ENST00000541713 TMEM71Q6P5X7 295 aa11.95□□□□□ -0.5
PTPN1-202ENST00000541713 OR5M8Q8NGP6 311 aa11.95□□□□□ -0.5
PTPN1-202ENST00000541713 REEP6Q96HR9 211 aa11.95□□□□□ -0.5
PTPN1-202ENST00000541713 PRRT1Q99946 306 aa11.95□□□□□ -0.5
PTPN1-202ENST00000541713 SLC25A21Q9BQT8 299 aaPredicted RBP11.95□□□□□ -0.5
PTPN1-202ENST00000541713 SAV1Q9H4B6 383 aaPredicted RBP11.95□□□□□ -0.5
PTPN1-202ENST00000541713 HPF1Q9NWY4 346 aa11.95□□□□□ -0.5
PTPN1-202ENST00000541713 LSM5Q9Y4Y9 91 aaKnown RBP11.95□□□□□ -0.5
PTPN1-202ENST00000541713 TPRP12270 2363 aaKnown RBP11.95□□□□□ -0.5
PTPN1-202ENST00000541713 TEX13DA0A0J9YY54 714 aaPredicted RBP11.95□□□□□ -0.5
PTPN1-202ENST00000541713 A0A1W2PQD3 144 aa11.95□□□□□ -0.5
PTPN1-202ENST00000541713 PMS2P1A4D2B8 440 aa11.95□□□□□ -0.5
PTPN1-202ENST00000541713 CDK2AP1O14519 115 aa11.95□□□□□ -0.5
PTPN1-202ENST00000541713 SERPINA5P05154 406 aa11.95□□□□□ -0.5
PTPN1-202ENST00000541713 B4GALT1P15291 398 aa11.95□□□□□ -0.5
PTPN1-202ENST00000541713 CSNK1A1P48729 337 aa11.95□□□□□ -0.5
PTPN1-202ENST00000541713 LYG2Q86SG7 212 aa11.95□□□□□ -0.5
PTPN1-202ENST00000541713 ZNF441Q8N8Z8 693 aa11.95□□□□□ -0.5
PTPN1-202ENST00000541713 WDSUB1Q8N9V3 476 aa11.95□□□□□ -0.5
PTPN1-202ENST00000541713 OR5M9Q8NGP3 310 aa11.95□□□□□ -0.5
PTPN1-202ENST00000541713 LPAR5Q9H1C0 372 aa11.95□□□□□ -0.5
PTPN1-202ENST00000541713 PPA2Q9H2U2 334 aa11.95□□□□□ -0.5
PTPN1-202ENST00000541713 DKKL1Q9UK85 242 aa11.95□□□□□ -0.5
PTPN1-202ENST00000541713 LCATP04180 440 aa11.95□□□□□ -0.5
PTPN1-202ENST00000541713 NME2P22392 152 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms