RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 SPERTQ8NA61 448 aa11.89□□□□□ -0.51
USP28-209ENST00000540925 DVL3Q92997 716 aaPredicted RBP11.89□□□□□ -0.51
USP28-209ENST00000540925 RBM4BQ9BQ04 359 aaKnown RBP11.89□□□□□ -0.51
USP28-209ENST00000540925 OR10A2Q9H208 303 aa11.89□□□□□ -0.51
USP28-209ENST00000540925 ADGRL4Q9HBW9 690 aa11.89□□□□□ -0.51
USP28-209ENST00000540925 FAM206AQ9NX38 181 aa11.89□□□□□ -0.51
USP28-209ENST00000540925 UBAP1Q9NZ09 502 aa11.89□□□□□ -0.51
USP28-209ENST00000540925 USE1Q9NZ43 259 aa11.89□□□□□ -0.51
USP28-209ENST00000540925 LAMP5Q9UJQ1 280 aa11.89□□□□□ -0.51
USP28-209ENST00000540925 WNK2Q9Y3S1 2297 aa11.88□□□□□ -0.51
USP28-209ENST00000540925 A0A0G2JMP0 313 aa11.88□□□□□ -0.51
USP28-209ENST00000540925 A0A0X1KG70 313 aa11.88□□□□□ -0.51
USP28-209ENST00000540925 ACOD1A6NK06 481 aa11.88□□□□□ -0.51
USP28-209ENST00000540925 SAC3D1A6NKF1 404 aa11.88□□□□□ -0.51
USP28-209ENST00000540925 SLC22A31A6NKX4 558 aa11.88□□□□□ -0.51
USP28-209ENST00000540925 LRRC30A6NM36 301 aa11.88□□□□□ -0.51
USP28-209ENST00000540925 TRAPPC2LH3BP13 241 aa11.88□□□□□ -0.51
USP28-209ENST00000540925 TNFRSF13BO14836 293 aaPredicted RBP11.88□□□□□ -0.51
USP28-209ENST00000540925 PHF1O43189 567 aaPredicted RBP11.88□□□□□ -0.51
USP28-209ENST00000540925 TBX1O43435 398 aa11.88□□□□□ -0.51
USP28-209ENST00000540925 SRSF10O75494 262 aaKnown RBP11.88□□□□□ -0.51
USP28-209ENST00000540925 FOXH1O75593 365 aa11.88□□□□□ -0.51
USP28-209ENST00000540925 MRPL3P09001 348 aaKnown RBP11.88□□□□□ -0.51
USP28-209ENST00000540925 ACKR3P25106 362 aa11.88□□□□□ -0.51
USP28-209ENST00000540925 LCN2P80188 198 aa11.88□□□□□ -0.51
USP28-209ENST00000540925 FAM201AQ5SY85 155 aa11.88□□□□□ -0.51
USP28-209ENST00000540925 ZFP1Q6P2D0 407 aa11.88□□□□□ -0.51
USP28-209ENST00000540925 ZNF771Q7L3S4 317 aaPredicted RBP11.88□□□□□ -0.51
USP28-209ENST00000540925 WDR86Q86TI4 376 aa11.88□□□□□ -0.51
USP28-209ENST00000540925 C11orf53Q8IXP5 236 aa11.88□□□□□ -0.51
USP28-209ENST00000540925 ZNF679Q8IYX0 411 aa11.88□□□□□ -0.51
USP28-209ENST00000540925 C1orf87Q8N0U7 546 aa11.88□□□□□ -0.51
USP28-209ENST00000540925 OR4M2Q8NGB6 313 aa11.88□□□□□ -0.51
USP28-209ENST00000540925 OR8B12Q8NGG6 310 aa11.88□□□□□ -0.51
USP28-209ENST00000540925 OR8B4Q96RC9 309 aa11.88□□□□□ -0.51
USP28-209ENST00000540925 CNN2Q99439 309 aaKnown RBP11.88□□□□□ -0.51
USP28-209ENST00000540925 TMEM246Q9BRR3 403 aa11.88□□□□□ -0.51
USP28-209ENST00000540925 PPP1R3EQ9H7J1 279 aa11.88□□□□□ -0.51
USP28-209ENST00000540925 N6AMT1Q9Y5N5 214 aa11.88□□□□□ -0.51
USP28-209ENST00000540925 A0A0U1RQV5 110 aa11.87□□□□□ -0.51
USP28-209ENST00000540925 EBAG9O00559 213 aa11.87□□□□□ -0.51
USP28-209ENST00000540925 ZNF254O75437 659 aa11.87□□□□□ -0.51
USP28-209ENST00000540925 ZNF205O95201 554 aa11.87□□□□□ -0.51
USP28-209ENST00000540925 LHBP01229 141 aa11.87□□□□□ -0.51
USP28-209ENST00000540925 HOXA4Q00056 320 aaPredicted RBP11.87□□□□□ -0.51
USP28-209ENST00000540925 TUSC1Q2TAM9 212 aa11.87□□□□□ -0.51
USP28-209ENST00000540925 FAHD2BQ6P2I3 314 aaPredicted RBP11.87□□□□□ -0.51
USP28-209ENST00000540925 KCTD18Q6PI47 426 aaPredicted RBP11.87□□□□□ -0.51
USP28-209ENST00000540925 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.87□□□□□ -0.51
USP28-209ENST00000540925 GID4Q8IVV7 300 aa11.87□□□□□ -0.51
USP28-209ENST00000540925 DEFB108BQ8NET1 73 aa11.87□□□□□ -0.51
USP28-209ENST00000540925 CSNK2A3Q8NEV1 391 aa11.87□□□□□ -0.51
USP28-209ENST00000540925 ASB17Q8WXJ9 295 aa11.87□□□□□ -0.51
USP28-209ENST00000540925 ITPKCQ96DU7 683 aa11.87□□□□□ -0.51
USP28-209ENST00000540925 FAHD2AQ96GK7 314 aa11.87□□□□□ -0.51
USP28-209ENST00000540925 PGAM5Q96HS1 289 aa11.87□□□□□ -0.51
USP28-209ENST00000540925 IL4I1Q96RQ9 567 aa11.87□□□□□ -0.51
USP28-209ENST00000540925 TLNRD1Q9H1K6 362 aa11.87□□□□□ -0.51
USP28-209ENST00000540925 FN3KRPQ9HA64 309 aa11.87□□□□□ -0.51
USP28-209ENST00000540925 BRD7Q9NPI1 651 aa11.87□□□□□ -0.51
USP28-209ENST00000540925 MMP26Q9NRE1 261 aa11.87□□□□□ -0.51
USP28-209ENST00000540925 UFSP2Q9NUQ7 469 aa11.87□□□□□ -0.51
USP28-209ENST00000540925 RNF7Q9UBF6 113 aa11.87□□□□□ -0.51
USP28-209ENST00000540925 ZNF391Q9UJN7 358 aa11.87□□□□□ -0.51
USP28-209ENST00000540925 LRCH1Q9Y2L9 728 aa11.87□□□□□ -0.51
USP28-209ENST00000540925 RHBDD3Q9Y3P4 386 aa11.87□□□□□ -0.51
USP28-209ENST00000540925 PPIAL4AQ9Y536 164 aa11.87□□□□□ -0.51
USP28-209ENST00000540925 TMEM14AQ9Y6G1 99 aa11.87□□□□□ -0.51
USP28-209ENST00000540925 ANKRD30BLA7E2S9 258 aa11.86□□□□□ -0.51
USP28-209ENST00000540925 CST4P01036 141 aa11.86□□□□□ -0.51
USP28-209ENST00000540925 ZNF12P17014 697 aa11.86□□□□□ -0.51
USP28-209ENST00000540925 PSMB10P40306 273 aa11.86□□□□□ -0.51
USP28-209ENST00000540925 DCAF12L2Q5VW00 463 aa11.86□□□□□ -0.51
USP28-209ENST00000540925 ZNF841Q6ZN19 808 aa11.86□□□□□ -0.51
USP28-209ENST00000540925 C1QL2Q7Z5L3 287 aa11.86□□□□□ -0.51
USP28-209ENST00000540925 KRT77Q7Z794 578 aa11.86□□□□□ -0.51
USP28-209ENST00000540925 OR8J1Q8NGP2 316 aa11.86□□□□□ -0.51
USP28-209ENST00000540925 OR11L1Q8NGX0 322 aa11.86□□□□□ -0.51
USP28-209ENST00000540925 ITFG2Q969R8 447 aa11.86□□□□□ -0.51
USP28-209ENST00000540925 MNTQ99583 582 aa11.86□□□□□ -0.51
USP28-209ENST00000540925 FGF23Q9GZV9 251 aaPredicted RBP11.86□□□□□ -0.51
USP28-209ENST00000540925 RIBC2Q9H4K1 309 aa11.86□□□□□ -0.51
USP28-209ENST00000540925 CLN6Q9NWW5 311 aa11.86□□□□□ -0.51
USP28-209ENST00000540925 NUFIP1Q9UHK0 495 aaKnown RBP11.86□□□□□ -0.51
USP28-209ENST00000540925 PCDHB10Q9UN67 800 aa11.86□□□□□ -0.51
USP28-209ENST00000540925 LOC105371242A0A075B767 164 aa11.85□□□□□ -0.51
USP28-209ENST00000540925 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP11.85□□□□□ -0.51
USP28-209ENST00000540925 TMEM269A0A1B0GVZ9 245 aa11.85□□□□□ -0.51
USP28-209ENST00000540925 PSMD9O00233 223 aa11.85□□□□□ -0.51
USP28-209ENST00000540925 EI24O14681 340 aa11.85□□□□□ -0.51
USP28-209ENST00000540925 HTR1FP30939 366 aa11.85□□□□□ -0.51
USP28-209ENST00000540925 CFHR2P36980 270 aa11.85□□□□□ -0.51
USP28-209ENST00000540925 SRP14P37108 136 aaKnown RBP11.85□□□□□ -0.51
USP28-209ENST00000540925 ALDH3A2P51648 485 aa11.85□□□□□ -0.51
USP28-209ENST00000540925 MZT1Q08AG7 82 aa11.85□□□□□ -0.51
USP28-209ENST00000540925 GFOD2Q3B7J2 385 aa11.85□□□□□ -0.51
USP28-209ENST00000540925 KRTAP24-1Q3LI83 254 aa11.85□□□□□ -0.51
USP28-209ENST00000540925 FAM76BQ5HYJ3 339 aa11.85□□□□□ -0.51
USP28-209ENST00000540925 SLC25A30Q5SVS4 291 aa11.85□□□□□ -0.51
USP28-209ENST00000540925 ZNF684Q5T5D7 378 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms