RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 ZNF670-ZNF695F2Z2N8 137 aa10.92□□□□□ -0.66
VPS28-216ENST00000533806 CASQ2O14958 399 aaPredicted RBP10.92□□□□□ -0.66
VPS28-216ENST00000533806 IGHV2-5P01817 119 aa10.92□□□□□ -0.66
VPS28-216ENST00000533806 ISL1P61371 349 aa10.92□□□□□ -0.66
VPS28-216ENST00000533806 MFGE8Q08431 387 aaPredicted RBP10.92□□□□□ -0.66
VPS28-216ENST00000533806 RCN1Q15293 331 aa10.92□□□□□ -0.66
VPS28-216ENST00000533806 ZMYND11Q15326 602 aa10.92□□□□□ -0.66
VPS28-216ENST00000533806 OR8G1Q15617 311 aa10.92□□□□□ -0.66
VPS28-216ENST00000533806 MPPED2Q15777 294 aa10.92□□□□□ -0.66
VPS28-216ENST00000533806 TIGD6Q17RP2 521 aa10.92□□□□□ -0.66
VPS28-216ENST00000533806 LRRC28Q86X40 367 aaPredicted RBP10.92□□□□□ -0.66
VPS28-216ENST00000533806 LINC01356Q8N9X3 169 aa10.92□□□□□ -0.66
VPS28-216ENST00000533806 ZNF420Q8TAQ5 688 aaPredicted RBP10.92□□□□□ -0.66
VPS28-216ENST00000533806 ITFG2Q969R8 447 aa10.92□□□□□ -0.66
VPS28-216ENST00000533806 ERGIC1Q969X5 290 aa10.92□□□□□ -0.66
VPS28-216ENST00000533806 PPP1R14AQ96A00 147 aa10.92□□□□□ -0.66
VPS28-216ENST00000533806 TIMD4Q96H15 378 aa10.92□□□□□ -0.66
VPS28-216ENST00000533806 ADAT1Q9BUB4 502 aaKnown RBP10.92□□□□□ -0.66
VPS28-216ENST00000533806 TTTY10Q9BZA0 68 aa10.92□□□□□ -0.66
VPS28-216ENST00000533806 PBOV1Q9GZY1 135 aa10.92□□□□□ -0.66
VPS28-216ENST00000533806 PPP1R3EQ9H7J1 279 aa10.92□□□□□ -0.66
VPS28-216ENST00000533806 ZNF665Q9H7R5 613 aa10.92□□□□□ -0.66
VPS28-216ENST00000533806 G6PC2Q9NQR9 355 aa10.92□□□□□ -0.66
VPS28-216ENST00000533806 AASSQ9UDR5 926 aa10.92□□□□□ -0.66
VPS28-216ENST00000533806 NUFIP1Q9UHK0 495 aaKnown RBP10.92□□□□□ -0.66
VPS28-216ENST00000533806 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP10.92□□□□□ -0.663e-6■□□□□ 9.1
VPS28-216ENST00000533806 NOP16Q9Y3C1 178 aaKnown RBP10.92□□□□□ -0.66
VPS28-216ENST00000533806 GMPPBQ9Y5P6 360 aa10.92□□□□□ -0.66
VPS28-216ENST00000533806 B4DSR2 109 aa10.91□□□□□ -0.66
VPS28-216ENST00000533806 LMX1BO60663 402 aa10.91□□□□□ -0.66
VPS28-216ENST00000533806 APOL3O95236 402 aa10.91□□□□□ -0.66
VPS28-216ENST00000533806 CST4P01036 141 aa10.91□□□□□ -0.66
VPS28-216ENST00000533806 TGFAP01135 160 aa10.91□□□□□ -0.66
VPS28-216ENST00000533806 MTNR1AP48039 350 aa10.91□□□□□ -0.66
VPS28-216ENST00000533806 RIDAP52758 137 aaKnown RBP10.91□□□□□ -0.66
VPS28-216ENST00000533806 TMEM155Q4W5P6 130 aa10.91□□□□□ -0.66
VPS28-216ENST00000533806 LPCAT4Q643R3 524 aa10.91□□□□□ -0.66
VPS28-216ENST00000533806 FAM166AQ6J272 317 aa10.91□□□□□ -0.66
VPS28-216ENST00000533806 Q6ZSR3 168 aa10.91□□□□□ -0.66
VPS28-216ENST00000533806 MOGAT3Q86VF5 341 aa10.91□□□□□ -0.66
VPS28-216ENST00000533806 C11orf53Q8IXP5 236 aa10.91□□□□□ -0.66
VPS28-216ENST00000533806 PACRGLQ8N7B6 248 aa10.91□□□□□ -0.66
VPS28-216ENST00000533806 SPERTQ8NA61 448 aa10.91□□□□□ -0.66
VPS28-216ENST00000533806 NARFLQ9H6Q4 476 aa10.91□□□□□ -0.66
VPS28-216ENST00000533806 C8orf4Q9NR00 106 aa10.91□□□□□ -0.66
VPS28-216ENST00000533806 SMPD3Q9NY59 655 aaPredicted RBP10.91□□□□□ -0.66
VPS28-216ENST00000533806 EXOGQ9Y2C4 368 aaKnown RBP10.91□□□□□ -0.66
VPS28-216ENST00000533806 RHBDD3Q9Y3P4 386 aa10.91□□□□□ -0.66
VPS28-216ENST00000533806 TANC2Q9HCD6 1990 aa10.9□□□□□ -0.66
VPS28-216ENST00000533806 IGHV3-64DA0A0J9YX35 117 aa10.9□□□□□ -0.66
VPS28-216ENST00000533806 METTL15A6NJ78 407 aa10.9□□□□□ -0.66
VPS28-216ENST00000533806 SULT1C4O75897 302 aa10.9□□□□□ -0.66
VPS28-216ENST00000533806 TTRP02766 147 aa10.9□□□□□ -0.66
VPS28-216ENST00000533806 PEX2P28328 305 aa10.9□□□□□ -0.66
VPS28-216ENST00000533806 BTG1P62324 171 aa10.9□□□□□ -0.66
VPS28-216ENST00000533806 ELF3P78545 371 aaPredicted RBP10.9□□□□□ -0.66
VPS28-216ENST00000533806 ZNF85Q03923 595 aa10.9□□□□□ -0.66
VPS28-216ENST00000533806 GFOD2Q3B7J2 385 aa10.9□□□□□ -0.66
VPS28-216ENST00000533806 ZNF829Q3KNS6 432 aaPredicted RBP10.9□□□□□ -0.66
VPS28-216ENST00000533806 OGFRL1Q5TC84 451 aaPredicted RBP10.9□□□□□ -0.66
VPS28-216ENST00000533806 PRAMEF6Q5VXH4 476 aa10.9□□□□□ -0.66
VPS28-216ENST00000533806 LIPNQ5VXI9 398 aa10.9□□□□□ -0.66
VPS28-216ENST00000533806 PEG10Q86TG7 708 aaKnown RBP10.9□□□□□ -0.66
VPS28-216ENST00000533806 WDR86Q86TI4 376 aa10.9□□□□□ -0.66
VPS28-216ENST00000533806 ELMOD2Q8IZ81 293 aa10.9□□□□□ -0.66
VPS28-216ENST00000533806 GALNT4Q8N4A0 578 aa10.9□□□□□ -0.66
VPS28-216ENST00000533806 CSNK2A3Q8NEV1 391 aa10.9□□□□□ -0.66
VPS28-216ENST00000533806 APH1BQ8WW43 257 aa10.9□□□□□ -0.66
VPS28-216ENST00000533806 DVL3Q92997 716 aaPredicted RBP10.9□□□□□ -0.66
VPS28-216ENST00000533806 ITPKCQ96DU7 683 aa10.9□□□□□ -0.66
VPS28-216ENST00000533806 RNFT2Q96EX2 444 aa10.9□□□□□ -0.66
VPS28-216ENST00000533806 TBX5Q99593 518 aa10.9□□□□□ -0.66
VPS28-216ENST00000533806 TMEM165Q9HC07 324 aa10.9□□□□□ -0.66
VPS28-216ENST00000533806 MRPS18AQ9NVS2 196 aaKnown RBP10.9□□□□□ -0.66
VPS28-216ENST00000533806 IKZF2Q9UKS7 526 aa10.9□□□□□ -0.66
VPS28-216ENST00000533806 R4GMQ9 66 aa10.9□□□□□ -0.66
VPS28-216ENST00000533806 MALRD1Q5VYJ5 2156 aa10.9□□□□□ -0.66
VPS28-216ENST00000533806 CUBNO60494 3623 aa10.89□□□□□ -0.67
VPS28-216ENST00000533806 A0A1B0GTI1 187 aa10.89□□□□□ -0.67
VPS28-216ENST00000533806 ANKRD30BLA7E2S9 258 aa10.89□□□□□ -0.67
VPS28-216ENST00000533806 F5H0A9 414 aaPredicted RBP10.89□□□□□ -0.67
VPS28-216ENST00000533806 MPZL2O60487 215 aa10.89□□□□□ -0.67
VPS28-216ENST00000533806 FAM20BO75063 409 aa10.89□□□□□ -0.67
VPS28-216ENST00000533806 WBP4O75554 376 aaKnown RBP10.89□□□□□ -0.67
VPS28-216ENST00000533806 CYB5R3P00387 301 aaPredicted RBP10.89□□□□□ -0.67
VPS28-216ENST00000533806 LHBP01229 141 aa10.89□□□□□ -0.67
VPS28-216ENST00000533806 MSMBP08118 114 aa10.89□□□□□ -0.67
VPS28-216ENST00000533806 ATP6V1B1P15313 513 aa10.89□□□□□ -0.67
VPS28-216ENST00000533806 DVL1P1P54792 670 aaPredicted RBP10.89□□□□□ -0.67
VPS28-216ENST00000533806 ADARB1P78563 741 aaKnown RBP10.89□□□□□ -0.67
VPS28-216ENST00000533806 LRRC36Q1X8D7 754 aa10.89□□□□□ -0.67
VPS28-216ENST00000533806 KRTAP21-3Q3LHN1 58 aa10.89□□□□□ -0.67
VPS28-216ENST00000533806 FAM76BQ5HYJ3 339 aa10.89□□□□□ -0.67
VPS28-216ENST00000533806 PLEKHG7Q6ZR37 379 aa10.89□□□□□ -0.67
VPS28-216ENST00000533806 OR10H4Q8NGA5 316 aa10.89□□□□□ -0.67
VPS28-216ENST00000533806 OR51E1Q8TCB6 317 aa10.89□□□□□ -0.67
VPS28-216ENST00000533806 RORBQ92753 470 aa10.89□□□□□ -0.67
VPS28-216ENST00000533806 LGALS12Q96DT0 336 aa10.89□□□□□ -0.67
VPS28-216ENST00000533806 ZNF649Q9BS31 505 aa10.89□□□□□ -0.67
VPS28-216ENST00000533806 FGF23Q9GZV9 251 aaPredicted RBP10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms