RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 EXT1Q16394 746 aa18.73■□□□□ 0.59
VPS28-205ENST00000526204 SGCAQ16586 387 aa18.73■□□□□ 0.59
VPS28-205ENST00000526204 GLRX5Q86SX6 157 aa18.73■□□□□ 0.59
VPS28-205ENST00000526204 PNLDC1Q8NA58 520 aaKnown RBP18.73■□□□□ 0.59
VPS28-205ENST00000526204 BVESQ8NE79 360 aa18.73■□□□□ 0.59
VPS28-205ENST00000526204 OR14K1Q8NGZ2 314 aa18.73■□□□□ 0.59
VPS28-205ENST00000526204 THAP6Q8TBB0 222 aa18.73■□□□□ 0.59
VPS28-205ENST00000526204 PHYHIPLQ96FC7 376 aa18.73■□□□□ 0.59
VPS28-205ENST00000526204 RALGAPA1Q6GYQ0 2036 aa18.73■□□□□ 0.59
VPS28-205ENST00000526204 LOC105371267A0A1B0GV96 52 aa18.73■□□□□ 0.59
VPS28-205ENST00000526204 D6RAR5 112 aa18.73■□□□□ 0.59
VPS28-205ENST00000526204 VAMP5O95183 116 aa18.73■□□□□ 0.59
VPS28-205ENST00000526204 AKR1C4P17516 323 aa18.73■□□□□ 0.59
VPS28-205ENST00000526204 CSNK1A1P48729 337 aa18.73■□□□□ 0.59
VPS28-205ENST00000526204 PLAC9Q5JTB6 97 aa18.73■□□□□ 0.59
VPS28-205ENST00000526204 RNF144BQ7Z419 303 aa18.73■□□□□ 0.59
VPS28-205ENST00000526204 GJC3Q8NFK1 279 aa18.73■□□□□ 0.59
VPS28-205ENST00000526204 SSC4DQ8WTU2 575 aa18.73■□□□□ 0.59
VPS28-205ENST00000526204 VRK1Q99986 396 aaPredicted RBP18.73■□□□□ 0.59
VPS28-205ENST00000526204 OCSTAMPQ9BR26 566 aa18.73■□□□□ 0.59
VPS28-205ENST00000526204 ZNF416Q9BWM5 594 aa18.73■□□□□ 0.59
VPS28-205ENST00000526204 NELFAQ9H3P2 528 aa18.73■□□□□ 0.59
VPS28-205ENST00000526204 SDK1Q7Z5N4 2213 aa18.72■□□□□ 0.59
VPS28-205ENST00000526204 SMAD9O15198 467 aaKnown RBP18.72■□□□□ 0.59
VPS28-205ENST00000526204 SOCS1O15524 211 aa18.72■□□□□ 0.59
VPS28-205ENST00000526204 TUSC1Q2TAM9 212 aa18.72■□□□□ 0.59
VPS28-205ENST00000526204 LRRC37A5PQ49AS3 106 aa18.72■□□□□ 0.59
VPS28-205ENST00000526204 C10orf128Q5T292 105 aa18.72■□□□□ 0.59
VPS28-205ENST00000526204 ADAD2Q8NCV1 583 aaKnown RBP18.72■□□□□ 0.59
VPS28-205ENST00000526204 PXT1Q8NFP0 134 aa18.72■□□□□ 0.59
VPS28-205ENST00000526204 PGAM5Q96HS1 289 aa18.72■□□□□ 0.59
VPS28-205ENST00000526204 RASL12Q9NYN1 266 aa18.72■□□□□ 0.59
VPS28-205ENST00000526204 IGHV1-45A0A0A0MS14 117 aa18.71■□□□□ 0.59
VPS28-205ENST00000526204 FAM25EA8MYX2 175 aa18.71■□□□□ 0.59
VPS28-205ENST00000526204 CRTAPO75718 401 aaPredicted RBP18.71■□□□□ 0.59
VPS28-205ENST00000526204 KLK3P07288 261 aaPredicted RBP18.71■□□□□ 0.59
VPS28-205ENST00000526204 PRF1P14222 555 aa18.71■□□□□ 0.59
VPS28-205ENST00000526204 KLK2P20151 261 aa18.71■□□□□ 0.59
VPS28-205ENST00000526204 DLSTP36957 453 aa18.71■□□□□ 0.59
VPS28-205ENST00000526204 ATP1B3P54709 279 aa18.71■□□□□ 0.59
VPS28-205ENST00000526204 TAGLNQ01995 201 aaKnown RBP18.71■□□□□ 0.59
VPS28-205ENST00000526204 GFOD2Q3B7J2 385 aa18.71■□□□□ 0.59
VPS28-205ENST00000526204 MARCH1Q8TCQ1 289 aa18.71■□□□□ 0.59
VPS28-205ENST00000526204 CASTOR1Q8WTX7 329 aa18.71■□□□□ 0.59
VPS28-205ENST00000526204 ANGPTL4Q9BY76 406 aa18.71■□□□□ 0.59
VPS28-205ENST00000526204 ZNF700Q9H0M5 742 aa18.71■□□□□ 0.59
VPS28-205ENST00000526204 DNTTIP1Q9H147 329 aa18.71■□□□□ 0.59
VPS28-205ENST00000526204 BANF2Q9H503 90 aa18.71■□□□□ 0.59
VPS28-205ENST00000526204 GLS2Q9UI32 602 aa18.71■□□□□ 0.59
VPS28-205ENST00000526204 CCDC163A0A0D9SF12 145 aa18.71■□□□□ 0.59
VPS28-205ENST00000526204 A0A0U1RQV5 110 aa18.71■□□□□ 0.59
VPS28-205ENST00000526204 DBX1A6NMT0 343 aa18.71■□□□□ 0.59
VPS28-205ENST00000526204 CEACAM18A8MTB9 384 aa18.71■□□□□ 0.59
VPS28-205ENST00000526204 YKT6O15498 198 aa18.71■□□□□ 0.59
VPS28-205ENST00000526204 IGLV3-1P01715 115 aa18.71■□□□□ 0.59
VPS28-205ENST00000526204 HOXD4P09016 255 aaPredicted RBP18.71■□□□□ 0.59
VPS28-205ENST00000526204 AVPR2P30518 371 aa18.71■□□□□ 0.59
VPS28-205ENST00000526204 STARP49675 285 aa18.71■□□□□ 0.59
VPS28-205ENST00000526204 ZNF133P52736 654 aaPredicted RBP18.71■□□□□ 0.59
VPS28-205ENST00000526204 TMEM50BP56557 158 aa18.71■□□□□ 0.59
VPS28-205ENST00000526204 MICBQ29980 383 aa18.71■□□□□ 0.59
VPS28-205ENST00000526204 TMEM128Q5BJH2 165 aa18.71■□□□□ 0.59
VPS28-205ENST00000526204 INO80EQ8NBZ0 244 aaPredicted RBP18.71■□□□□ 0.59
VPS28-205ENST00000526204 TMEM54Q969K7 222 aa18.71■□□□□ 0.59
VPS28-205ENST00000526204 SCGB3A2Q96PL1 93 aa18.71■□□□□ 0.59
VPS28-205ENST00000526204 DMRTA2Q96SC8 542 aa18.71■□□□□ 0.59
VPS28-205ENST00000526204 NAA11Q9BSU3 229 aaPredicted RBP18.71■□□□□ 0.59
VPS28-205ENST00000526204 SHARPINQ9H0F6 387 aa18.71■□□□□ 0.59
VPS28-205ENST00000526204 OR10A2Q9H208 303 aa18.71■□□□□ 0.59
VPS28-205ENST00000526204 FN3KRPQ9HA64 309 aa18.71■□□□□ 0.59
VPS28-205ENST00000526204 ZNF160Q9HCG1 818 aa18.71■□□□□ 0.59
VPS28-205ENST00000526204 PILRBQ9UKJ0 227 aa18.71■□□□□ 0.59
VPS28-205ENST00000526204 ASCC3Q8N3C0 2202 aaKnown RBP18.71■□□□□ 0.59
VPS28-205ENST00000526204 IGKV1-9A0A0C4DH69 117 aa18.7■□□□□ 0.58
VPS28-205ENST00000526204 RNF222A6NCQ9 220 aa18.7■□□□□ 0.58
VPS28-205ENST00000526204 ALDH3B1P43353 468 aa18.7■□□□□ 0.58
VPS28-205ENST00000526204 DSCR4P56555 118 aaPredicted RBP18.7■□□□□ 0.58
VPS28-205ENST00000526204 CYCSP99999 105 aaKnown RBP18.7■□□□□ 0.58
VPS28-205ENST00000526204 KCTD9Q7L273 389 aa18.7■□□□□ 0.58
VPS28-205ENST00000526204 FAM89BQ8N5H3 189 aa18.7■□□□□ 0.58
VPS28-205ENST00000526204 SREK1IP1Q8N9Q2 155 aaPredicted RBP18.7■□□□□ 0.58
VPS28-205ENST00000526204 OR2I1PQ8NGU4 316 aa18.7■□□□□ 0.58
VPS28-205ENST00000526204 IFI44Q8TCB0 444 aa18.7■□□□□ 0.58
VPS28-205ENST00000526204 IMMP1LQ96LU5 166 aa18.7■□□□□ 0.58
VPS28-205ENST00000526204 MFNGO00587 321 aa18.7■□□□□ 0.58
VPS28-205ENST00000526204 THBS4P35443 961 aa18.7■□□□□ 0.58
VPS28-205ENST00000526204 PMS2CLQ68D20 193 aa18.7■□□□□ 0.58
VPS28-205ENST00000526204 FOXL2NBQ6ZUU3 175 aa18.7■□□□□ 0.58
VPS28-205ENST00000526204 TMEM185AQ8NFB2 350 aa18.7■□□□□ 0.58
VPS28-205ENST00000526204 M1APQ8TC57 530 aa18.7■□□□□ 0.58
VPS28-205ENST00000526204 IER2Q9BTL4 223 aa18.7■□□□□ 0.58
VPS28-205ENST00000526204 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP18.7■□□□□ 0.58
VPS28-205ENST00000526204 CACNA1EQ15878 2313 aa18.69■□□□□ 0.58
VPS28-205ENST00000526204 NPIPA2E9PIF3 369 aa18.69■□□□□ 0.58
VPS28-205ENST00000526204 NPIPA3F8WFD2 350 aa18.69■□□□□ 0.58
VPS28-205ENST00000526204 BET1O15155 118 aa18.69■□□□□ 0.58
VPS28-205ENST00000526204 APOC1P02654 83 aa18.69■□□□□ 0.58
VPS28-205ENST00000526204 LIFP15018 202 aa18.69■□□□□ 0.58
VPS28-205ENST00000526204 HOXA6P31267 233 aa18.69■□□□□ 0.58
VPS28-205ENST00000526204 PTGFRP43088 359 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms