RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 ZNF664Q8N3J9 261 aa7.47□□□□□ -1.21
CSMD1-213ENST00000523488 PLPP5Q8NEB5 264 aa7.47□□□□□ -1.21
CSMD1-213ENST00000523488 NT5CQ8TCD5 201 aa7.47□□□□□ -1.21
CSMD1-213ENST00000523488 CTHRC1Q96CG8 243 aa7.47□□□□□ -1.21
CSMD1-213ENST00000523488 CAPNS2Q96L46 248 aa7.47□□□□□ -1.21
CSMD1-213ENST00000523488 NMNAT3Q96T66 252 aa7.47□□□□□ -1.21
CSMD1-213ENST00000523488 PCED1AQ9H1Q7 454 aa7.47□□□□□ -1.21
CSMD1-213ENST00000523488 FLRT3Q9NZU0 649 aa7.47□□□□□ -1.21
CSMD1-213ENST00000523488 HSF4Q9ULV5 492 aa7.47□□□□□ -1.21
CSMD1-213ENST00000523488 SCGNO76038 276 aa7.46□□□□□ -1.21
CSMD1-213ENST00000523488 NDUFB2O95178 105 aa7.46□□□□□ -1.21
CSMD1-213ENST00000523488 SLC35G4P0C7Q5 338 aa7.46□□□□□ -1.21
CSMD1-213ENST00000523488 ESDP10768 282 aa7.46□□□□□ -1.21
CSMD1-213ENST00000523488 EPHA1P21709 976 aa7.46□□□□□ -1.21
CSMD1-213ENST00000523488 SMAD4Q13485 552 aaKnown RBP7.46□□□□□ -1.21
CSMD1-213ENST00000523488 BATFQ16520 125 aa7.46□□□□□ -1.21
CSMD1-213ENST00000523488 ETFRF1Q6IPR1 90 aa7.46□□□□□ -1.21
CSMD1-213ENST00000523488 SPSB3Q6PJ21 355 aa7.46□□□□□ -1.21
CSMD1-213ENST00000523488 ZNF705AQ6ZN79 300 aaPredicted RBP7.46□□□□□ -1.21
CSMD1-213ENST00000523488 MDGA2Q7Z553 956 aa7.46□□□□□ -1.21
CSMD1-213ENST00000523488 HSD11B1LQ7Z5J1 315 aa7.46□□□□□ -1.21
CSMD1-213ENST00000523488 ZNF619Q8N2I2 560 aa7.46□□□□□ -1.21
CSMD1-213ENST00000523488 PLPP7Q8NBV4 271 aa7.46□□□□□ -1.21
CSMD1-213ENST00000523488 TMEM104Q8NE00 496 aa7.46□□□□□ -1.21
CSMD1-213ENST00000523488 Q8WTZ3 238 aa7.46□□□□□ -1.21
CSMD1-213ENST00000523488 GLYATL1Q969I3 302 aa7.46□□□□□ -1.21
CSMD1-213ENST00000523488 RTBDNQ9BSG5 229 aaPredicted RBP7.46□□□□□ -1.21
CSMD1-213ENST00000523488 LAMP5Q9UJQ1 280 aa7.46□□□□□ -1.21
CSMD1-213ENST00000523488 SLCO1B1Q9Y6L6 691 aa7.46□□□□□ -1.21
CSMD1-213ENST00000523488 HEATR5BQ9P2D3 2071 aa7.46□□□□□ -1.22
CSMD1-213ENST00000523488 PTPRSQ13332 1948 aa7.46□□□□□ -1.22
CSMD1-213ENST00000523488 A0A1B0GTH9 108 aa7.46□□□□□ -1.22
CSMD1-213ENST00000523488 TMEM238LA0A1B0GVL6 79 aa7.46□□□□□ -1.22
CSMD1-213ENST00000523488 DCDC2BA2VCK2 349 aa7.46□□□□□ -1.22
CSMD1-213ENST00000523488 M0QZK8 103 aa7.46□□□□□ -1.22
CSMD1-213ENST00000523488 TP53I11O14683 189 aa7.46□□□□□ -1.22
CSMD1-213ENST00000523488 GGCTO75223 188 aaKnown RBP7.46□□□□□ -1.22
CSMD1-213ENST00000523488 ELFN1P0C7U0 828 aa7.46□□□□□ -1.22
CSMD1-213ENST00000523488 ZNF708P17019 499 aa7.46□□□□□ -1.22
CSMD1-213ENST00000523488 TLX1P31314 330 aaPredicted RBP7.46□□□□□ -1.22
CSMD1-213ENST00000523488 CD200P41217 278 aa7.46□□□□□ -1.22
CSMD1-213ENST00000523488 MGAT2Q10469 447 aa7.46□□□□□ -1.22
CSMD1-213ENST00000523488 RAB32Q13637 225 aa7.46□□□□□ -1.22
CSMD1-213ENST00000523488 AARDQ4LEZ3 155 aa7.46□□□□□ -1.22
CSMD1-213ENST00000523488 TMEM128Q5BJH2 165 aa7.46□□□□□ -1.22
CSMD1-213ENST00000523488 ZNF343Q6P1L6 599 aa7.46□□□□□ -1.22
CSMD1-213ENST00000523488 DPPA3Q6W0C5 159 aa7.46□□□□□ -1.22
CSMD1-213ENST00000523488 TRAPPC6BQ86SZ2 158 aa7.46□□□□□ -1.22
CSMD1-213ENST00000523488 OR14C36Q8NHC7 312 aa7.46□□□□□ -1.22
CSMD1-213ENST00000523488 TAAR8Q969N4 342 aa7.46□□□□□ -1.22
CSMD1-213ENST00000523488 AGMATQ9BSE5 352 aa7.46□□□□□ -1.22
CSMD1-213ENST00000523488 OR11A1Q9GZK7 315 aa7.46□□□□□ -1.22
CSMD1-213ENST00000523488 ZNF700Q9H0M5 742 aa7.46□□□□□ -1.22
CSMD1-213ENST00000523488 RIMS4Q9H426 269 aaPredicted RBP7.46□□□□□ -1.22
CSMD1-213ENST00000523488 AURKAIP1Q9NWT8 199 aaPredicted RBP7.46□□□□□ -1.22
CSMD1-213ENST00000523488 SERGEFQ9UGK8 458 aa7.46□□□□□ -1.22
CSMD1-213ENST00000523488 KLHDC2Q9Y2U9 406 aa7.46□□□□□ -1.22
CSMD1-213ENST00000523488 EXPH5Q8NEV8 1989 aa7.46□□□□□ -1.22
CSMD1-213ENST00000523488 ITGB1BP1O14713 200 aa7.45□□□□□ -1.22
CSMD1-213ENST00000523488 ERI3O43414 337 aaKnown RBP7.45□□□□□ -1.22
CSMD1-213ENST00000523488 SCGB1D2O95969 90 aa7.45□□□□□ -1.22
CSMD1-213ENST00000523488 CXCL1P09341 107 aa7.45□□□□□ -1.22
CSMD1-213ENST00000523488 FCGR2CP31995 323 aa7.45□□□□□ -1.22
CSMD1-213ENST00000523488 GLO1Q04760 184 aa7.45□□□□□ -1.22
CSMD1-213ENST00000523488 TRMT12Q53H54 448 aaKnown RBP7.45□□□□□ -1.22
CSMD1-213ENST00000523488 DMRTA1Q5VZB9 504 aa7.45□□□□□ -1.22
CSMD1-213ENST00000523488 LCN10Q6JVE6 187 aa7.45□□□□□ -1.22
CSMD1-213ENST00000523488 ZNF573Q86YE8 665 aa7.45□□□□□ -1.22
CSMD1-213ENST00000523488 AMER3Q8N944 861 aa7.45□□□□□ -1.22
CSMD1-213ENST00000523488 ADAD2Q8NCV1 583 aaKnown RBP7.45□□□□□ -1.22
CSMD1-213ENST00000523488 MARCH1Q8TCQ1 289 aa7.45□□□□□ -1.22
CSMD1-213ENST00000523488 SLC22A18Q96BI1 424 aa7.45□□□□□ -1.22
CSMD1-213ENST00000523488 DNAJA3Q96EY1 480 aa7.45□□□□□ -1.22
CSMD1-213ENST00000523488 SNX22Q96L94 193 aa7.45□□□□□ -1.22
CSMD1-213ENST00000523488 SDF2Q99470 211 aa7.45□□□□□ -1.22
CSMD1-213ENST00000523488 SNHG12Q9BXW3 62 aa7.45□□□□□ -1.22
CSMD1-213ENST00000523488 ANGPTL4Q9BY76 406 aa7.45□□□□□ -1.22
CSMD1-213ENST00000523488 CHST11Q9NPF2 352 aa7.45□□□□□ -1.22
CSMD1-213ENST00000523488 HIF3AQ9Y2N7 669 aa7.45□□□□□ -1.22
CSMD1-213ENST00000523488 HS3ST3B1Q9Y662 390 aa7.45□□□□□ -1.22
CSMD1-213ENST00000523488 ALPK2Q86TB3 2170 aa7.45□□□□□ -1.22
CSMD1-213ENST00000523488 TRBV23OR9-2A0A075B6M9 112 aa7.45□□□□□ -1.22
CSMD1-213ENST00000523488 NPIPA5A0A0B4J1W7 369 aa7.45□□□□□ -1.22
CSMD1-213ENST00000523488 A0A1W2PR48 441 aa7.45□□□□□ -1.22
CSMD1-213ENST00000523488 NPIPA7E9PJI5 369 aa7.45□□□□□ -1.22
CSMD1-213ENST00000523488 TYMSP04818 313 aa7.45□□□□□ -1.22
CSMD1-213ENST00000523488 TRGC1P0CF51 173 aa7.45□□□□□ -1.22
CSMD1-213ENST00000523488 NPIPA8P0DM63 369 aa7.45□□□□□ -1.22
CSMD1-213ENST00000523488 ACRP10323 421 aa7.45□□□□□ -1.22
CSMD1-213ENST00000523488 SERPINA2P20848 420 aa7.45□□□□□ -1.22
CSMD1-213ENST00000523488 RPL12P30050 165 aaKnown RBP7.45□□□□□ -1.22
CSMD1-213ENST00000523488 RPL29P47914 159 aaKnown RBP7.45□□□□□ -1.22
CSMD1-213ENST00000523488 ZNF141Q15928 474 aa7.45□□□□□ -1.22
CSMD1-213ENST00000523488 KCNMB1Q16558 191 aa7.45□□□□□ -1.22
CSMD1-213ENST00000523488 ZNF506Q5JVG8 444 aa7.45□□□□□ -1.22
CSMD1-213ENST00000523488 FNDC7Q5VTL7 733 aa7.45□□□□□ -1.22
CSMD1-213ENST00000523488 FCRL6Q6DN72 434 aa7.45□□□□□ -1.22
CSMD1-213ENST00000523488 C22orf39Q6P5X5 142 aa7.45□□□□□ -1.22
CSMD1-213ENST00000523488 RTN4RL1Q86UN2 441 aaPredicted RBP7.45□□□□□ -1.22
CSMD1-213ENST00000523488 NKAIN3Q8N8D7 197 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms