RNA–Protein interactions for RNA: ENST00000523441.1

SDCBP-211, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-211ENST00000523441 SLC22A4Q9H015 551 aa9.44□□□□□ -0.9
SDCBP-211ENST00000523441 PPP1R3EQ9H7J1 279 aa9.44□□□□□ -0.9
SDCBP-211ENST00000523441 NMNAT1Q9HAN9 279 aaPredicted RBP9.44□□□□□ -0.9
SDCBP-211ENST00000523441 C14orf119Q9NWQ9 140 aa9.44□□□□□ -0.9
SDCBP-211ENST00000523441 KAAG1Q9UBP8 84 aa9.44□□□□□ -0.9
SDCBP-211ENST00000523441 SF3B6Q9Y3B4 125 aaKnown RBP9.44□□□□□ -0.9
SDCBP-211ENST00000523441 EPPK1P58107 5090 aaKnown RBP9.44□□□□□ -0.9
SDCBP-211ENST00000523441 NKX6-3A6NJ46 265 aa9.43□□□□□ -0.9
SDCBP-211ENST00000523441 E9PQ18 207 aa9.43□□□□□ -0.9
SDCBP-211ENST00000523441 TBX1O43435 398 aa9.43□□□□□ -0.9
SDCBP-211ENST00000523441 LHBP01229 141 aa9.43□□□□□ -0.9
SDCBP-211ENST00000523441 TROVE2P10155 538 aaKnown RBP eCLIP9.43□□□□□ -0.9
SDCBP-211ENST00000523441 GABRA2P47869 451 aa9.43□□□□□ -0.9
SDCBP-211ENST00000523441 GZMMP51124 257 aa9.43□□□□□ -0.9
SDCBP-211ENST00000523441 PRKXP51817 358 aa9.43□□□□□ -0.9
SDCBP-211ENST00000523441 MAGOHP61326 146 aaKnown RBP9.43□□□□□ -0.9
SDCBP-211ENST00000523441 HIST1H3AP68431 136 aa9.43□□□□□ -0.9
SDCBP-211ENST00000523441 SLC35A2P78381 396 aa9.43□□□□□ -0.9
SDCBP-211ENST00000523441 ACSM1Q08AH1 577 aa9.43□□□□□ -0.9
SDCBP-211ENST00000523441 RFX4Q33E94 735 aa9.43□□□□□ -0.9
SDCBP-211ENST00000523441 DMRTC1Q5HYR2 192 aa9.43□□□□□ -0.9
SDCBP-211ENST00000523441 HIST2H3PS2Q5TEC6 136 aa9.43□□□□□ -0.9
SDCBP-211ENST00000523441 NANOGP8Q6NSW7 305 aa9.43□□□□□ -0.9
SDCBP-211ENST00000523441 SLC18B1Q6NT16 456 aa9.43□□□□□ -0.9
SDCBP-211ENST00000523441 DNM1P34Q6PK57 102 aa9.43□□□□□ -0.9
SDCBP-211ENST00000523441 Q6ZS46 218 aa9.43□□□□□ -0.9
SDCBP-211ENST00000523441 HIST2H3AQ71DI3 136 aa9.43□□□□□ -0.9
SDCBP-211ENST00000523441 TSEN54Q7Z6J9 526 aaKnown RBP9.43□□□□□ -0.9
SDCBP-211ENST00000523441 VTCN1Q7Z7D3 282 aa9.43□□□□□ -0.9
SDCBP-211ENST00000523441 WDR86Q86TI4 376 aa9.43□□□□□ -0.9
SDCBP-211ENST00000523441 B9D2Q9BPU9 175 aa9.43□□□□□ -0.9
SDCBP-211ENST00000523441 CCDC28BQ9BUN5 200 aa9.43□□□□□ -0.9
SDCBP-211ENST00000523441 TMEM120AQ9BXJ8 343 aa9.43□□□□□ -0.9
SDCBP-211ENST00000523441 CDCA4Q9BXL8 241 aa9.43□□□□□ -0.9
SDCBP-211ENST00000523441 WDR13Q9H1Z4 485 aa9.43□□□□□ -0.9
SDCBP-211ENST00000523441 METTL8Q9H825 291 aaKnown RBP9.43□□□□□ -0.9
SDCBP-211ENST00000523441 SLC25A10Q9UBX3 287 aaPredicted RBP9.43□□□□□ -0.9
SDCBP-211ENST00000523441 A0A087WUU8 490 aa9.42□□□□□ -0.9
SDCBP-211ENST00000523441 MEGF11A6BM72 1044 aa9.42□□□□□ -0.9
SDCBP-211ENST00000523441 ANKRD30BLA7E2S9 258 aa9.42□□□□□ -0.9
SDCBP-211ENST00000523441 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.42□□□□□ -0.9
SDCBP-211ENST00000523441 CDIPTO14735 213 aa9.42□□□□□ -0.9
SDCBP-211ENST00000523441 AHCYL1O43865 530 aa9.42□□□□□ -0.9
SDCBP-211ENST00000523441 NDUFB2O95178 105 aa9.42□□□□□ -0.9
SDCBP-211ENST00000523441 IFNA14P01570 189 aa9.42□□□□□ -0.9
SDCBP-211ENST00000523441 CHRM2P08172 466 aa9.42□□□□□ -0.9
SDCBP-211ENST00000523441 MUC1P15941 1255 aaPredicted RBP9.42□□□□□ -0.9
SDCBP-211ENST00000523441 AMY2BP19961 511 aa9.42□□□□□ -0.9
SDCBP-211ENST00000523441 GRK5P34947 590 aa9.42□□□□□ -0.9
SDCBP-211ENST00000523441 VDAC2P45880 294 aaPredicted RBP9.42□□□□□ -0.9
SDCBP-211ENST00000523441 CAPZA1P52907 286 aa9.42□□□□□ -0.9
SDCBP-211ENST00000523441 LGALS4P56470 323 aa9.42□□□□□ -0.9
SDCBP-211ENST00000523441 ERVFRD-1P60508 538 aa9.42□□□□□ -0.9
SDCBP-211ENST00000523441 KCNMB1Q16558 191 aa9.42□□□□□ -0.9
SDCBP-211ENST00000523441 DGUOKQ16854 277 aa9.42□□□□□ -0.9
SDCBP-211ENST00000523441 GFOD2Q3B7J2 385 aa9.42□□□□□ -0.9
SDCBP-211ENST00000523441 TNFAIP8L3Q5GJ75 292 aa9.42□□□□□ -0.9
SDCBP-211ENST00000523441 HCP5Q6MZN7 132 aa9.42□□□□□ -0.9
SDCBP-211ENST00000523441 CRIP3Q6Q6R5 217 aa9.42□□□□□ -0.9
SDCBP-211ENST00000523441 WDR82Q6UXN9 313 aa9.42□□□□□ -0.9
SDCBP-211ENST00000523441 RNF144BQ7Z419 303 aa9.42□□□□□ -0.9
SDCBP-211ENST00000523441 C11orf53Q8IXP5 236 aa9.42□□□□□ -0.9
SDCBP-211ENST00000523441 MKXQ8IYA7 352 aa9.42□□□□□ -0.9
SDCBP-211ENST00000523441 OR6V1Q8N148 313 aa9.42□□□□□ -0.9
SDCBP-211ENST00000523441 DPP10Q8N608 796 aa9.42□□□□□ -0.9
SDCBP-211ENST00000523441 TMEM185AQ8NFB2 350 aa9.42□□□□□ -0.9
SDCBP-211ENST00000523441 OR5AU1Q8NGC0 362 aa9.42□□□□□ -0.9
SDCBP-211ENST00000523441 ERMAPQ96PL5 475 aaPredicted RBP9.42□□□□□ -0.9
SDCBP-211ENST00000523441 CHID1Q9BWS9 393 aa9.42□□□□□ -0.9
SDCBP-211ENST00000523441 RPRD1BQ9NQG5 326 aaKnown RBP9.42□□□□□ -0.9
SDCBP-211ENST00000523441 MRPL15Q9P015 296 aaKnown RBP9.42□□□□□ -0.9
SDCBP-211ENST00000523441 B9D1Q9UPM9 204 aa9.42□□□□□ -0.9
SDCBP-211ENST00000523441 U3KQK5 164 aa9.42□□□□□ -0.9
SDCBP-211ENST00000523441 TCRBV4S1A1TA0A5B7 111 aa9.41□□□□□ -0.9
SDCBP-211ENST00000523441 FFAR1O14842 300 aa9.41□□□□□ -0.9
SDCBP-211ENST00000523441 AKR7A2O43488 359 aa9.41□□□□□ -0.9
SDCBP-211ENST00000523441 PTBP3O95758 552 aaKnown RBP9.41□□□□□ -0.9
SDCBP-211ENST00000523441 ZNF682O95780 498 aa9.41□□□□□ -0.9
SDCBP-211ENST00000523441 IFNW1P05000 195 aa9.41□□□□□ -0.9
SDCBP-211ENST00000523441 CRABP1P29762 137 aa9.41□□□□□ -0.9
SDCBP-211ENST00000523441 MZT1Q08AG7 82 aa9.41□□□□□ -0.9
SDCBP-211ENST00000523441 TAF13Q15543 124 aa9.41□□□□□ -0.9
SDCBP-211ENST00000523441 ANKDD1AQ495B1 522 aa9.41□□□□□ -0.9
SDCBP-211ENST00000523441 GPR139Q6DWJ6 353 aa9.41□□□□□ -0.9
SDCBP-211ENST00000523441 KCTD8Q6ZWB6 473 aa9.41□□□□□ -0.9
SDCBP-211ENST00000523441 MBOAT2Q6ZWT7 520 aa9.41□□□□□ -0.9
SDCBP-211ENST00000523441 LHFPL4Q7Z7J7 247 aa9.41□□□□□ -0.9
SDCBP-211ENST00000523441 OFCC1Q8IZS5 231 aa9.41□□□□□ -0.9
SDCBP-211ENST00000523441 LINC00471Q8N535 108 aa9.41□□□□□ -0.9
SDCBP-211ENST00000523441 PLPP7Q8NBV4 271 aa9.41□□□□□ -0.9
SDCBP-211ENST00000523441 SLC26A10Q8NG04 563 aa9.41□□□□□ -0.9
SDCBP-211ENST00000523441 OR1M1Q8NGA1 313 aa9.41□□□□□ -0.9
SDCBP-211ENST00000523441 OR4K13Q8NH42 304 aa9.41□□□□□ -0.9
SDCBP-211ENST00000523441 C8orf46Q8TAG6 207 aa9.41□□□□□ -0.9
SDCBP-211ENST00000523441 SPTSSAQ969W0 71 aa9.41□□□□□ -0.9
SDCBP-211ENST00000523441 AJUBAQ96IF1 538 aa9.41□□□□□ -0.9
SDCBP-211ENST00000523441 MAP6Q96JE9 813 aa9.41□□□□□ -0.9
SDCBP-211ENST00000523441 GAFA1Q96PS6 74 aa9.41□□□□□ -0.9
SDCBP-211ENST00000523441 NMNAT3Q96T66 252 aa9.41□□□□□ -0.9
SDCBP-211ENST00000523441 ASCL2Q99929 193 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms