RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 ISG15P05161 165 aa13.11□□□□□ -0.31
LSM1-203ENST00000520755 CD1AP06126 327 aa13.11□□□□□ -0.31
LSM1-203ENST00000520755 UBCP0CG48 685 aaKnown RBP13.11□□□□□ -0.31
LSM1-203ENST00000520755 ACHEP22303 614 aa13.11□□□□□ -0.31
LSM1-203ENST00000520755 ACKR3P25106 362 aa13.11□□□□□ -0.31
LSM1-203ENST00000520755 GCH1P30793 250 aa13.11□□□□□ -0.31
LSM1-203ENST00000520755 CDKN1AP38936 164 aa13.11□□□□□ -0.31
LSM1-203ENST00000520755 MAGEB1P43366 347 aa13.11□□□□□ -0.31
LSM1-203ENST00000520755 SNRPD2P62316 118 aaKnown RBP13.11□□□□□ -0.31
LSM1-203ENST00000520755 FAM3AP98173 230 aa13.11□□□□□ -0.31
LSM1-203ENST00000520755 EFNB3Q15768 340 aa13.11□□□□□ -0.31
LSM1-203ENST00000520755 ZNF718Q3SXZ3 478 aa13.11□□□□□ -0.31
LSM1-203ENST00000520755 FBXW12Q6X9E4 464 aa13.11□□□□□ -0.31
LSM1-203ENST00000520755 OR5L1Q8NGL2 311 aa13.11□□□□□ -0.31
LSM1-203ENST00000520755 OR5AK2Q8NH90 309 aa13.11□□□□□ -0.31
LSM1-203ENST00000520755 SYNPRQ8TBG9 265 aa13.11□□□□□ -0.31
LSM1-203ENST00000520755 GHSRQ92847 366 aa13.11□□□□□ -0.31
LSM1-203ENST00000520755 PIGTQ969N2 578 aa13.11□□□□□ -0.31
LSM1-203ENST00000520755 REPIN1Q9BWE0 567 aaKnown RBP13.11□□□□□ -0.31
LSM1-203ENST00000520755 SP140LQ9H930 580 aa13.11□□□□□ -0.31
LSM1-203ENST00000520755 VCX3AQ9NNX9 186 aa13.11□□□□□ -0.31
LSM1-203ENST00000520755 LILRA1O75019 489 aa13.1□□□□□ -0.31
LSM1-203ENST00000520755 KLF3P57682 345 aaPredicted RBP13.1□□□□□ -0.31
LSM1-203ENST00000520755 SELENOVP59797 346 aa13.1□□□□□ -0.31
LSM1-203ENST00000520755 GPR50Q13585 617 aa13.1□□□□□ -0.31
LSM1-203ENST00000520755 INSL4Q14641 139 aa13.1□□□□□ -0.31
LSM1-203ENST00000520755 OR8B8Q15620 311 aa13.1□□□□□ -0.31
LSM1-203ENST00000520755 MST1LQ2TV78 715 aa13.1□□□□□ -0.31
LSM1-203ENST00000520755 ALKBH6Q3KRA9 238 aa13.1□□□□□ -0.31
LSM1-203ENST00000520755 C11orf71Q6IPW1 123 aa13.1□□□□□ -0.31
LSM1-203ENST00000520755 C1orf174Q8IYL3 243 aa13.1□□□□□ -0.31
LSM1-203ENST00000520755 ZNF676Q8N7Q3 588 aa13.1□□□□□ -0.31
LSM1-203ENST00000520755 OR13F1Q8NGS4 319 aa13.1□□□□□ -0.31
LSM1-203ENST00000520755 OR14K1Q8NGZ2 314 aa13.1□□□□□ -0.31
LSM1-203ENST00000520755 KLF14Q8TD94 323 aaPredicted RBP13.1□□□□□ -0.31
LSM1-203ENST00000520755 IGFBPL1Q8WX77 278 aa13.1□□□□□ -0.31
LSM1-203ENST00000520755 NINJ1Q92982 152 aa13.1□□□□□ -0.31
LSM1-203ENST00000520755 YIPF6Q96EC8 236 aa13.1□□□□□ -0.31
LSM1-203ENST00000520755 TRMT61AQ96FX7 289 aaKnown RBP13.1□□□□□ -0.31
LSM1-203ENST00000520755 FAM71F1Q96KD3 344 aaPredicted RBP13.1□□□□□ -0.31
LSM1-203ENST00000520755 CACNG6Q9BXT2 260 aa13.1□□□□□ -0.31
LSM1-203ENST00000520755 COMMD4Q9H0A8 199 aa13.1□□□□□ -0.31
LSM1-203ENST00000520755 RGCCQ9H4X1 137 aa13.1□□□□□ -0.31
LSM1-203ENST00000520755 CXorf56Q9H5V9 222 aa13.1□□□□□ -0.31
LSM1-203ENST00000520755 MYEF2Q9P2K5 600 aaKnown RBP13.1□□□□□ -0.31
LSM1-203ENST00000520755 SCOCQ9UIL1 159 aa13.1□□□□□ -0.31
LSM1-203ENST00000520755 ZNF281Q9Y2X9 895 aa13.1□□□□□ -0.31
LSM1-203ENST00000520755 TANC2Q9HCD6 1990 aa13.1□□□□□ -0.31
LSM1-203ENST00000520755 SPG11Q96JI7 2443 aa13.09□□□□□ -0.31
LSM1-203ENST00000520755 TRBV5-5A0A0J9YX44 114 aa13.09□□□□□ -0.31
LSM1-203ENST00000520755 H3BSA7 217 aa13.09□□□□□ -0.31
LSM1-203ENST00000520755 CCRL2O00421 344 aa13.09□□□□□ -0.31
LSM1-203ENST00000520755 SC5DO75845 299 aa13.09□□□□□ -0.31
LSM1-203ENST00000520755 ZNF250P15622 560 aa13.09□□□□□ -0.31
LSM1-203ENST00000520755 MALLQ13021 153 aa13.09□□□□□ -0.31
LSM1-203ENST00000520755 PSG7Q13046 419 aa13.09□□□□□ -0.31
LSM1-203ENST00000520755 SWI5Q1ZZU3 235 aa13.09□□□□□ -0.31
LSM1-203ENST00000520755 TMEM244Q5VVB8 128 aa13.09□□□□□ -0.31
LSM1-203ENST00000520755 MBNL2Q5VZF2 373 aaKnown RBP13.09□□□□□ -0.31
LSM1-203ENST00000520755 MRPL21Q7Z2W9 205 aaKnown RBP13.09□□□□□ -0.31
LSM1-203ENST00000520755 COMMD2Q86X83 199 aa13.09□□□□□ -0.31
LSM1-203ENST00000520755 TMED9Q9BVK6 235 aa13.09□□□□□ -0.31
LSM1-203ENST00000520755 DYNLRB1Q9NP97 96 aa13.09□□□□□ -0.31
LSM1-203ENST00000520755 ZNF391Q9UJN7 358 aa13.09□□□□□ -0.31
LSM1-203ENST00000520755 V9GYS6 101 aa13.09□□□□□ -0.31
LSM1-203ENST00000520755 POLQO75417 2590 aa13.09□□□□□ -0.31
LSM1-203ENST00000520755 PDZD2O15018 2839 aa13.08□□□□□ -0.31
LSM1-203ENST00000520755 IGLV3-9A0A075B6K5 115 aa13.08□□□□□ -0.32
LSM1-203ENST00000520755 A0A1B0GVI7 797 aa13.08□□□□□ -0.32
LSM1-203ENST00000520755 LOC390937A0A1W2PQ73 354 aa13.08□□□□□ -0.32
LSM1-203ENST00000520755 SYT7O43581 403 aa13.08□□□□□ -0.32
LSM1-203ENST00000520755 DHRS3O75911 302 aa13.08□□□□□ -0.32
LSM1-203ENST00000520755 BMP4P12644 408 aa13.08□□□□□ -0.32
LSM1-203ENST00000520755 RAC2P15153 192 aa13.08□□□□□ -0.32
LSM1-203ENST00000520755 GABRA5P31644 462 aa13.08□□□□□ -0.32
LSM1-203ENST00000520755 ALDH3B1P43353 468 aa13.08□□□□□ -0.32
LSM1-203ENST00000520755 GSK3AP49840 483 aa13.08□□□□□ -0.32
LSM1-203ENST00000520755 NKPD1Q17RQ9 610 aa13.08□□□□□ -0.32
LSM1-203ENST00000520755 DEFB113Q30KQ7 82 aa13.08□□□□□ -0.32
LSM1-203ENST00000520755 YIF1BQ5BJH7 314 aa13.08□□□□□ -0.32
LSM1-203ENST00000520755 ASPHD2Q6ICH7 369 aa13.08□□□□□ -0.32
LSM1-203ENST00000520755 OR2T2Q6IF00 324 aa13.08□□□□□ -0.32
LSM1-203ENST00000520755 TMEM91Q6ZNR0 172 aa13.08□□□□□ -0.32
LSM1-203ENST00000520755 PGAP1Q75T13 922 aa13.08□□□□□ -0.32
LSM1-203ENST00000520755 DOK3Q7L591 496 aa13.08□□□□□ -0.32
LSM1-203ENST00000520755 OR56B2PQ8NGI1 322 aa13.08□□□□□ -0.32
LSM1-203ENST00000520755 TMEM203Q969S6 136 aa13.08□□□□□ -0.32
LSM1-203ENST00000520755 CMBLQ96DG6 245 aa13.08□□□□□ -0.32
LSM1-203ENST00000520755 OPA3Q9H6K4 179 aa13.08□□□□□ -0.32
LSM1-203ENST00000520755 BEX4Q9NWD9 120 aaPredicted RBP13.08□□□□□ -0.32
LSM1-203ENST00000520755 TAAR3PQ9P1P4 343 aa13.08□□□□□ -0.32
LSM1-203ENST00000520755 HHLA2Q9UM44 414 aa13.08□□□□□ -0.32
LSM1-203ENST00000520755 PMF1-BGLAPU3KQ54 211 aa13.08□□□□□ -0.32
LSM1-203ENST00000520755 CD300LBA8K4G0 201 aa13.07□□□□□ -0.32
LSM1-203ENST00000520755 M0R233 179 aa13.07□□□□□ -0.32
LSM1-203ENST00000520755 OVOL3O00110 214 aa13.07□□□□□ -0.32
LSM1-203ENST00000520755 TIMM8AO60220 97 aaPredicted RBP13.07□□□□□ -0.32
LSM1-203ENST00000520755 IGHV3-13P01766 116 aa13.07□□□□□ -0.32
LSM1-203ENST00000520755 CD36P16671 472 aa13.07□□□□□ -0.32
LSM1-203ENST00000520755 FAHP16930 419 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms