RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 GLAP06280 429 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 CD46P15529 392 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 SELENOPP49908 381 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 FOXK1P85037 733 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 MFGE8Q08431 387 aaPredicted RBP10.48□□□□□ -0.73
SYNPO-204ENST00000519664 SMAD4Q13485 552 aaKnown RBP10.48□□□□□ -0.73
SYNPO-204ENST00000519664 MESTQ5EB52 335 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 SLC25A26Q70HW3 274 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 SUMF2Q8NBJ7 301 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 OR52N4Q8NGI2 321 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 OR6S1Q8NH40 331 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 CHAC2Q8WUX2 184 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 MRGPRX4Q96LA9 322 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 KIF26BQ2KJY2 2108 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 VSTM5A8MXK1 200 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 ZNF587BE7ETH6 402 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 HSD17B6O14756 317 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 MSTNO14793 375 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 ZNF354AO60765 605 aaPredicted RBP10.48□□□□□ -0.73
SYNPO-204ENST00000519664 CD80P33681 288 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 ACAA2P42765 397 aaKnown RBP10.48□□□□□ -0.73
SYNPO-204ENST00000519664 ALDH3B1P43353 468 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 SLC22A25Q6T423 547 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 GLDNQ6ZMI3 551 aaPredicted RBP10.48□□□□□ -0.73
SYNPO-204ENST00000519664 ST7LQ8TDW4 575 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 LINC00052Q96N35 136 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 DLL4Q9NR61 685 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 ZNF814B7Z6K7 855 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 RAB27BO00194 218 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 DCTN6O00399 190 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 ADAM10O14672 748 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 CTAG2O75638 210 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 BCKDHBP21953 392 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 CLDN15P56746 228 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 EXT1Q16394 746 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 WIPI1Q5MNZ9 446 aaPredicted RBP10.48□□□□□ -0.73
SYNPO-204ENST00000519664 NAA40Q86UY6 237 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 ZNF251Q9BRH9 671 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 MTFP1Q9UDX5 166 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 KCNE5Q9UJ90 142 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 CHD5Q8TDI0 1954 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 C5orf49A4QMS7 147 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 C17orf51A8MQB3 221 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 ATG12O94817 140 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 NDUFB6O95139 128 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 NXPH2O95156 264 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 OR5H8P0DN80 308 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 HLA-DOBP13765 273 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 GPR3P46089 330 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 IDH3GP51553 393 aaPredicted RBP10.48□□□□□ -0.73
SYNPO-204ENST00000519664 SLC25A1P53007 311 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 UBE2IP63279 158 aaKnown RBP10.48□□□□□ -0.73
SYNPO-204ENST00000519664 EIF2S3LQ2VIR3 472 aaKnown RBP10.48□□□□□ -0.73
SYNPO-204ENST00000519664 C9orf62Q8N4C0 152 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 DUSP18Q8NEJ0 188 aa10.48□□□□□ -0.73
SYNPO-204ENST00000519664 FAM212BQ9NTI7 297 aaPredicted RBP10.48□□□□□ -0.73
SYNPO-204ENST00000519664 LSM2Q9Y333 95 aaKnown RBP10.48□□□□□ -0.73
SYNPO-204ENST00000519664 WDR87Q6ZQQ6 2873 aa10.47□□□□□ -0.73
SYNPO-204ENST00000519664 TUSC2O75896 110 aa10.47□□□□□ -0.73
SYNPO-204ENST00000519664 ZNF205O95201 554 aa10.47□□□□□ -0.73
SYNPO-204ENST00000519664 NANOS3P60323 173 aaKnown RBP10.47□□□□□ -0.73
SYNPO-204ENST00000519664 RPL23AP62750 156 aaKnown RBP10.47□□□□□ -0.73
SYNPO-204ENST00000519664 HMGN3Q15651 99 aa10.47□□□□□ -0.73
SYNPO-204ENST00000519664 CEACAM16Q2WEN9 425 aa10.47□□□□□ -0.73
SYNPO-204ENST00000519664 FAM209BQ5JX69 171 aa10.47□□□□□ -0.73
SYNPO-204ENST00000519664 RNF128Q8TEB7 428 aa10.47□□□□□ -0.73
SYNPO-204ENST00000519664 C14orf79Q96F83 325 aa10.47□□□□□ -0.73
SYNPO-204ENST00000519664 ZNF764Q96H86 408 aaPredicted RBP10.47□□□□□ -0.73
SYNPO-204ENST00000519664 MAGT1Q9H0U3 335 aa10.47□□□□□ -0.73
SYNPO-204ENST00000519664 CRLF2Q9HC73 371 aa10.47□□□□□ -0.73
SYNPO-204ENST00000519664 URGCP-MRPS24S4R325 110 aa10.47□□□□□ -0.73
SYNPO-204ENST00000519664 HEATR5BQ9P2D3 2071 aa10.47□□□□□ -0.73
SYNPO-204ENST00000519664 TMEM272A0A1B0GTI8 110 aa10.47□□□□□ -0.73
SYNPO-204ENST00000519664 TMEM200CA6NKL6 621 aa10.47□□□□□ -0.73
SYNPO-204ENST00000519664 C5orf67F2Z3F1 127 aa10.47□□□□□ -0.73
SYNPO-204ENST00000519664 VAMP5O95183 116 aa10.47□□□□□ -0.73
SYNPO-204ENST00000519664 ACOT7LQ6ZUV0 252 aa10.47□□□□□ -0.73
SYNPO-204ENST00000519664 OCSTAMPQ9BR26 566 aa10.47□□□□□ -0.73
SYNPO-204ENST00000519664 FLVCR1Q9Y5Y0 555 aa10.47□□□□□ -0.73
SYNPO-204ENST00000519664 PCNX1Q96RV3 2341 aa10.47□□□□□ -0.73
SYNPO-204ENST00000519664 PLSCR5A0PG75 271 aa10.47□□□□□ -0.73
SYNPO-204ENST00000519664 CEBPZOSA8MTT3 80 aa10.47□□□□□ -0.73
SYNPO-204ENST00000519664 SNRPGP15A8MWD9 76 aa10.47□□□□□ -0.73
SYNPO-204ENST00000519664 NME2P1O60361 137 aa10.47□□□□□ -0.73
SYNPO-204ENST00000519664 WDR1O75083 606 aa10.47□□□□□ -0.73
SYNPO-204ENST00000519664 NRASP01111 189 aa10.47□□□□□ -0.73
SYNPO-204ENST00000519664 SLC37A1P57057 533 aa10.47□□□□□ -0.73
SYNPO-204ENST00000519664 B2MP61769 119 aa10.47□□□□□ -0.73
SYNPO-204ENST00000519664 SHBQ15464 509 aa10.47□□□□□ -0.73
SYNPO-204ENST00000519664 OR2B11Q5JQS5 317 aa10.47□□□□□ -0.73
SYNPO-204ENST00000519664 TMEM65Q6PI78 240 aa10.47□□□□□ -0.73
SYNPO-204ENST00000519664 TRILQ7L0X0 811 aa10.47□□□□□ -0.73
SYNPO-204ENST00000519664 ATG4DQ86TL0 474 aaPredicted RBP10.47□□□□□ -0.73
SYNPO-204ENST00000519664 TMPRSS13Q9BYE2 586 aa10.47□□□□□ -0.73
SYNPO-204ENST00000519664 PPP1R3EQ9H7J1 279 aa10.47□□□□□ -0.73
SYNPO-204ENST00000519664 TAF9BQ9HBM6 251 aa10.47□□□□□ -0.73
SYNPO-204ENST00000519664 PRR13Q9NZ81 148 aa10.47□□□□□ -0.73
SYNPO-204ENST00000519664 MYOTQ9UBF9 498 aa10.47□□□□□ -0.73
SYNPO-204ENST00000519664 RBBP6Q7Z6E9 1792 aaKnown RBP10.47□□□□□ -0.73
SYNPO-204ENST00000519664 OTOFQ9HC10 1997 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms