RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 WWTR1Q9GZV5 400 aa11.84□□□□□ -0.51
TCOF1-213ENST00000514442 METTL9Q9H1A3 318 aa11.84□□□□□ -0.51
TCOF1-213ENST00000514442 ZNFX1Q9P2E3 1918 aaKnown RBP11.83□□□□□ -0.51
TCOF1-213ENST00000514442 TERTO14746 1132 aaKnown RBP11.83□□□□□ -0.52
TCOF1-213ENST00000514442 NPBWR1P48145 328 aa11.83□□□□□ -0.52
TCOF1-213ENST00000514442 RPL23AP62750 156 aaKnown RBP11.83□□□□□ -0.52
TCOF1-213ENST00000514442 GUK1Q16774 197 aa11.83□□□□□ -0.52
TCOF1-213ENST00000514442 FJX1Q86VR8 437 aa11.83□□□□□ -0.52
TCOF1-213ENST00000514442 CCDC71LQ8N9Z2 235 aa11.83□□□□□ -0.52
TCOF1-213ENST00000514442 GPBAR1Q8TDU6 330 aa11.83□□□□□ -0.52
TCOF1-213ENST00000514442 INTS12Q96CB8 462 aaKnown RBP11.83□□□□□ -0.52
TCOF1-213ENST00000514442 NMNAT2Q9BZQ4 307 aa11.83□□□□□ -0.52
TCOF1-213ENST00000514442 ZNF354AO60765 605 aaPredicted RBP11.83□□□□□ -0.52
TCOF1-213ENST00000514442 TNFSF15O95150 251 aa11.83□□□□□ -0.52
TCOF1-213ENST00000514442 FBP1P09467 338 aa11.83□□□□□ -0.52
TCOF1-213ENST00000514442 FCGR2CP31995 323 aa11.83□□□□□ -0.52
TCOF1-213ENST00000514442 EFNA3P52797 238 aa11.83□□□□□ -0.52
TCOF1-213ENST00000514442 C4orf17Q53FE4 359 aa11.83□□□□□ -0.52
TCOF1-213ENST00000514442 ZNF684Q5T5D7 378 aa11.83□□□□□ -0.52
TCOF1-213ENST00000514442 OR4D9Q8NGE8 314 aa11.83□□□□□ -0.52
TCOF1-213ENST00000514442 OR1L3Q8NH93 324 aa11.83□□□□□ -0.52
TCOF1-213ENST00000514442 ISOC2Q96AB3 205 aa11.83□□□□□ -0.52
TCOF1-213ENST00000514442 OR2A5Q96R48 311 aa11.83□□□□□ -0.52
TCOF1-213ENST00000514442 SPIN2AQ99865 258 aa11.83□□□□□ -0.52
TCOF1-213ENST00000514442 SPIN2BQ9BPZ2 258 aa11.83□□□□□ -0.52
TCOF1-213ENST00000514442 PRAMEF27A3QJZ7 478 aa11.83□□□□□ -0.52
TCOF1-213ENST00000514442 GGNBP1Q5YKI7 109 aa11.83□□□□□ -0.52
TCOF1-213ENST00000514442 C17orf47Q8NEP4 570 aa11.83□□□□□ -0.52
TCOF1-213ENST00000514442 CPNE4Q96A23 557 aaPredicted RBP11.83□□□□□ -0.52
TCOF1-213ENST00000514442 FITM1A5D6W6 292 aa11.83□□□□□ -0.52
TCOF1-213ENST00000514442 QDPRP09417 244 aa11.83□□□□□ -0.52
TCOF1-213ENST00000514442 RPL12P30050 165 aaKnown RBP11.83□□□□□ -0.52
TCOF1-213ENST00000514442 NPY4RP50391 375 aa11.83□□□□□ -0.52
TCOF1-213ENST00000514442 DHRS2Q13268 280 aa11.83□□□□□ -0.52
TCOF1-213ENST00000514442 CD200R1LQ6Q8B3 271 aa11.83□□□□□ -0.52
TCOF1-213ENST00000514442 VN1R4Q7Z5H5 301 aa11.83□□□□□ -0.52
TCOF1-213ENST00000514442 CADM4Q8NFZ8 388 aa11.83□□□□□ -0.52
TCOF1-213ENST00000514442 LRFN5Q96NI6 719 aa11.83□□□□□ -0.52
TCOF1-213ENST00000514442 KCNG2Q9UJ96 466 aa11.83□□□□□ -0.52
TCOF1-213ENST00000514442 FRG2CA6NGY1 282 aa11.82□□□□□ -0.52
TCOF1-213ENST00000514442 SHISA8B8ZZ34 492 aa11.82□□□□□ -0.52
TCOF1-213ENST00000514442 GPR3P46089 330 aa11.82□□□□□ -0.52
TCOF1-213ENST00000514442 CMTM1Q8IZ96 169 aa11.82□□□□□ -0.52
TCOF1-213ENST00000514442 BHLHE23Q8NDY6 225 aa11.82□□□□□ -0.52
TCOF1-213ENST00000514442 SP7Q8TDD2 431 aaPredicted RBP11.82□□□□□ -0.52
TCOF1-213ENST00000514442 ZG16BQ96DA0 208 aa11.82□□□□□ -0.52
TCOF1-213ENST00000514442 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.82□□□□□ -0.52
TCOF1-213ENST00000514442 RAB22AQ9UL26 194 aa11.82□□□□□ -0.52
TCOF1-213ENST00000514442 PTPRFP10586 1907 aa11.82□□□□□ -0.52
TCOF1-213ENST00000514442 HYAL3O43820 417 aaPredicted RBP11.82□□□□□ -0.52
TCOF1-213ENST00000514442 RECKO95980 971 aa11.82□□□□□ -0.52
TCOF1-213ENST00000514442 HFEQ30201 348 aa11.82□□□□□ -0.52
TCOF1-213ENST00000514442 C2orf76Q3KRA6 126 aa11.82□□□□□ -0.52
TCOF1-213ENST00000514442 KMT5CQ86Y97 462 aa11.82□□□□□ -0.52
TCOF1-213ENST00000514442 OR11G2Q8NGC1 345 aa11.82□□□□□ -0.52
TCOF1-213ENST00000514442 SLC25A43Q8WUT9 341 aaPredicted RBP11.82□□□□□ -0.52
TCOF1-213ENST00000514442 FAM60AQ9NP50 221 aa11.82□□□□□ -0.52
TCOF1-213ENST00000514442 DCAF16Q9NXF7 216 aa11.82□□□□□ -0.52
TCOF1-213ENST00000514442 OR5V1Q9UGF6 321 aa11.82□□□□□ -0.52
TCOF1-213ENST00000514442 KCNK7Q9Y2U2 307 aa11.82□□□□□ -0.52
TCOF1-213ENST00000514442 ZNF814B7Z6K7 855 aa11.82□□□□□ -0.52
TCOF1-213ENST00000514442 NDUFA2O43678 99 aa11.82□□□□□ -0.52
TCOF1-213ENST00000514442 AVPR2P30518 371 aa11.82□□□□□ -0.52
TCOF1-213ENST00000514442 GABRA2P47869 451 aa11.82□□□□□ -0.52
TCOF1-213ENST00000514442 DOC2BQ14184 412 aa11.82□□□□□ -0.52
TCOF1-213ENST00000514442 TMEM41BQ5BJD5 291 aa11.82□□□□□ -0.52
TCOF1-213ENST00000514442 MUCL1Q96DR8 90 aa11.82□□□□□ -0.52
TCOF1-213ENST00000514442 PRAMEF4O60810 478 aa11.82□□□□□ -0.52
TCOF1-213ENST00000514442 EML2O95834 649 aa11.82□□□□□ -0.52
TCOF1-213ENST00000514442 LTC4SQ16873 150 aa11.82□□□□□ -0.52
TCOF1-213ENST00000514442 SAMD10Q9BYL1 202 aa11.82□□□□□ -0.52
TCOF1-213ENST00000514442 ZNF93P35789 620 aaPredicted RBP11.81□□□□□ -0.52
TCOF1-213ENST00000514442 KIR2DL1P43626 348 aaPredicted RBP11.81□□□□□ -0.52
TCOF1-213ENST00000514442 PRAMEF9Q5VWM5 478 aa11.81□□□□□ -0.52
TCOF1-213ENST00000514442 TMEM182Q6ZP80 229 aaPredicted RBP11.81□□□□□ -0.52
TCOF1-213ENST00000514442 MAML2Q8IZL2 1156 aaPredicted RBP11.81□□□□□ -0.52
TCOF1-213ENST00000514442 POM121Q96HA1 1249 aa11.81□□□□□ -0.52
TCOF1-213ENST00000514442 CDX2Q99626 313 aaPredicted RBP11.81□□□□□ -0.52
TCOF1-213ENST00000514442 SLCO1C1Q9NYB5 712 aa11.81□□□□□ -0.52
TCOF1-213ENST00000514442 GDF2Q9UK05 429 aaPredicted RBP11.81□□□□□ -0.52
TCOF1-213ENST00000514442 IGHV1OR21-1A0A087WYE8 117 aa11.81□□□□□ -0.52
TCOF1-213ENST00000514442 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.81□□□□□ -0.52
TCOF1-213ENST00000514442 CCDC163A0A0D9SF12 145 aa11.81□□□□□ -0.52
TCOF1-213ENST00000514442 SLC31A2O15432 143 aa11.81□□□□□ -0.52
TCOF1-213ENST00000514442 TNFSF12O43508 249 aa11.81□□□□□ -0.52
TCOF1-213ENST00000514442 SERPINE2P07093 398 aa11.81□□□□□ -0.52
TCOF1-213ENST00000514442 BLVRBP30043 206 aaPredicted RBP11.81□□□□□ -0.52
TCOF1-213ENST00000514442 DIO1P49895 249 aa11.81□□□□□ -0.52
TCOF1-213ENST00000514442 PMPCAQ10713 525 aa11.81□□□□□ -0.52
TCOF1-213ENST00000514442 IKZF1Q13422 519 aa11.81□□□□□ -0.52
TCOF1-213ENST00000514442 TAF9Q16594 264 aa11.81□□□□□ -0.52
TCOF1-213ENST00000514442 NUBPLQ8TB37 319 aa11.81□□□□□ -0.52
TCOF1-213ENST00000514442 SECTM1Q8WVN6 248 aa11.81□□□□□ -0.52
TCOF1-213ENST00000514442 RHOVQ96L33 236 aa11.81□□□□□ -0.52
TCOF1-213ENST00000514442 TMEM9BQ9NQ34 198 aa11.81□□□□□ -0.52
TCOF1-213ENST00000514442 SF3B6Q9Y3B4 125 aaKnown RBP11.81□□□□□ -0.52
TCOF1-213ENST00000514442 MMP24Q9Y5R2 645 aa11.81□□□□□ -0.52
TCOF1-213ENST00000514442 AUP1Q9Y679 476 aa11.81□□□□□ -0.52
TCOF1-213ENST00000514442 C7orf77A4D0Y5 90 aa11.81□□□□□ -0.52
TCOF1-213ENST00000514442 RAB27BO00194 218 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms