RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 TGIF2LYQ8IUE0 185 aa3□□□□□ -1.93
NUP54-212ENST00000513248 LYG1Q8N1E2 194 aa3□□□□□ -1.93
NUP54-212ENST00000513248 ACBD4Q8NC06 268 aa3□□□□□ -1.93
NUP54-212ENST00000513248 OR9I1Q8NGQ6 314 aa3□□□□□ -1.93
NUP54-212ENST00000513248 MIPOL1Q8TD10 442 aa3□□□□□ -1.93
NUP54-212ENST00000513248 S100PBPQ96BU1 408 aa3□□□□□ -1.93
NUP54-212ENST00000513248 TLCD1Q96CP7 247 aa3□□□□□ -1.93
NUP54-212ENST00000513248 AURKBQ96GD4 344 aaPredicted RBP3□□□□□ -1.93
NUP54-212ENST00000513248 TEX37Q96LM6 180 aa3□□□□□ -1.93
NUP54-212ENST00000513248 TSSK2Q96PF2 358 aa3□□□□□ -1.93
NUP54-212ENST00000513248 ZNF607Q96SK3 696 aa3□□□□□ -1.93
NUP54-212ENST00000513248 KLHDC3Q9BQ90 382 aa3□□□□□ -1.93
NUP54-212ENST00000513248 CCDC28BQ9BUN5 200 aa3□□□□□ -1.93
NUP54-212ENST00000513248 SRXN1Q9BYN0 137 aa3□□□□□ -1.93
NUP54-212ENST00000513248 OR11A1Q9GZK7 315 aa3□□□□□ -1.93
NUP54-212ENST00000513248 TPT1P8Q9HAU6 139 aa3□□□□□ -1.93
NUP54-212ENST00000513248 ZNF443Q9Y2A4 671 aaPredicted RBP3□□□□□ -1.93
NUP54-212ENST00000513248 IFT52Q9Y366 437 aa3□□□□□ -1.93
NUP54-212ENST00000513248 HDGFL3Q9Y3E1 203 aa3□□□□□ -1.93
NUP54-212ENST00000513248 RNF115Q9Y4L5 304 aa3□□□□□ -1.93
NUP54-212ENST00000513248 SMAD5-AS1Q9Y6J3 95 aa3□□□□□ -1.93
NUP54-212ENST00000513248 ATMQ13315 3056 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 NBEAL1Q6ZS30 2694 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 UTP20O75691 2785 aaKnown RBP2.99□□□□□ -1.93
NUP54-212ENST00000513248 A0A096LPI6 279 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 IGHV3-38A0A0C4DH36 116 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 A0A0G2JND7 137 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 TMEM72A0PK05 275 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 PRORSD1PA6NEY8 169 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 OOEPA6NGQ2 149 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 ZNF724A8MTY0 619 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 DEFB108AA8MXU0 73 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 B4DXG7 233 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 E9PQ18 207 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 SURF4O15260 269 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 MLNRO43193 412 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 IDH3BO43837 385 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 EFNA2O43921 213 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 SERPINB7O75635 380 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 OR6A2O95222 327 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 GUSBP08236 651 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 ZCCHC18P0CG32 403 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 PSMB1P20618 241 aaKnown RBP2.99□□□□□ -1.93
NUP54-212ENST00000513248 AQP1P29972 269 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 SLC1A3P43003 542 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 IER3P46695 156 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 RGS8P57771 180 aaPredicted RBP2.99□□□□□ -1.93
NUP54-212ENST00000513248 UBE2NP61088 152 aaKnown RBP2.99□□□□□ -1.93
NUP54-212ENST00000513248 RPS4XP62701 263 aaKnown RBP2.99□□□□□ -1.93
NUP54-212ENST00000513248 BNIP2Q12982 314 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 FADDQ13158 208 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 CEACAM7Q14002 265 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 RGNQ15493 299 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 CYP51A1Q16850 503 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 FAM106AQ4KMX7 169 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 PRAMEF8Q5VWM4 474 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 PRAMEF7Q5VXH5 474 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 FBXW9Q5XUX1 488 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 NIPAL3Q6P499 406 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 EPGNQ6UW88 154 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 PET117Q6UWS5 81 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 TFAP2EQ6VUC0 442 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 SPNS3Q6ZMD2 512 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 ZNF836Q6ZNA1 936 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 GDPGP1Q6ZNW5 385 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 Q6ZT83 130 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 Q71RC1 249 aaPredicted RBP2.99□□□□□ -1.93
NUP54-212ENST00000513248 SSX8Q7RTT4 187 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 AAED1Q7RTV5 226 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 RANBP3LQ86VV4 465 aaPredicted RBP2.99□□□□□ -1.93
NUP54-212ENST00000513248 PHC2Q8IXK0 858 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 OR8H3Q8N146 312 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 GPR137CQ8N3F9 429 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 Q8NBF4 154 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 OR52E4Q8NGH9 312 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 OR4D10Q8NGI6 311 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 OR4C15Q8NGM1 316 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 MAL2Q969L2 176 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 ARL5BQ96KC2 179 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 MAGEB18Q96M61 343 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 NEDD4LQ96PU5 975 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 CITED2Q99967 270 aaPredicted RBP2.99□□□□□ -1.93
NUP54-212ENST00000513248 EBF4Q9BQW3 602 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 C1QTNF6Q9BXI9 259 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 DGCR6LQ9BY27 220 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 POTEKPQ9BYX7 375 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 SLC38A1Q9H2H9 487 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 COQ10BQ9H8M1 238 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 PLEKHF2Q9H8W4 249 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 TMEM27Q9HBJ8 222 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 SLCO1B3Q9NPD5 702 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 EXOSC3Q9NQT5 275 aaKnown RBP2.99□□□□□ -1.93
NUP54-212ENST00000513248 FAIMQ9NVQ4 179 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 TAS2R16Q9NYV7 291 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 LEF1Q9UJU2 399 aaPredicted RBP2.99□□□□□ -1.93
NUP54-212ENST00000513248 GPR132Q9UNW8 380 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 ANGPT4Q9Y264 503 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 TRAPPC4Q9Y296 219 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 SLC9A8Q9Y2E8 581 aa2.99□□□□□ -1.93
NUP54-212ENST00000513248 NDUFAF1Q9Y375 327 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms