RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 CCNG1P51959 295 aa2.31□□□□□ -2.04
HMGB1P28-201ENST00000507778 OR2B8PP59922 312 aa2.31□□□□□ -2.04
HMGB1P28-201ENST00000507778 KDSRQ06136 332 aa2.31□□□□□ -2.04
HMGB1P28-201ENST00000507778 TPRG1LQ5T0D9 272 aa2.31□□□□□ -2.04
HMGB1P28-201ENST00000507778 CD300LGQ6UXG3 332 aa2.31□□□□□ -2.04
HMGB1P28-201ENST00000507778 TMPRSS11AQ6ZMR5 421 aa2.31□□□□□ -2.04
HMGB1P28-201ENST00000507778 MRPL21Q7Z2W9 205 aaKnown RBP2.31□□□□□ -2.04
HMGB1P28-201ENST00000507778 TRAM1L1Q8N609 369 aa2.31□□□□□ -2.04
HMGB1P28-201ENST00000507778 RNF182Q8N6D2 247 aa2.31□□□□□ -2.04
HMGB1P28-201ENST00000507778 GATSQ8NAP1 163 aa2.31□□□□□ -2.04
HMGB1P28-201ENST00000507778 RXFP4Q8TDU9 374 aa2.31□□□□□ -2.04
HMGB1P28-201ENST00000507778 C17orf50Q8WW18 174 aa2.31□□□□□ -2.04
HMGB1P28-201ENST00000507778 PIH1D2Q8WWB5 315 aa2.31□□□□□ -2.04
HMGB1P28-201ENST00000507778 NAP1L5Q96NT1 182 aaPredicted RBP2.31□□□□□ -2.04
HMGB1P28-201ENST00000507778 SCGB3A2Q96PL1 93 aa2.31□□□□□ -2.04
HMGB1P28-201ENST00000507778 TEAD3Q99594 435 aa2.31□□□□□ -2.04
HMGB1P28-201ENST00000507778 IL22Q9GZX6 179 aa2.31□□□□□ -2.04
HMGB1P28-201ENST00000507778 ZNF442Q9H7R0 627 aa2.31□□□□□ -2.04
HMGB1P28-201ENST00000507778 PRSS16Q9NQE7 514 aa2.31□□□□□ -2.04
HMGB1P28-201ENST00000507778 DYRK4Q9NR20 520 aa2.31□□□□□ -2.04
HMGB1P28-201ENST00000507778 FBXO6Q9NRD1 293 aaPredicted RBP2.31□□□□□ -2.04
HMGB1P28-201ENST00000507778 ADA2Q9NZK5 511 aa2.31□□□□□ -2.04
HMGB1P28-201ENST00000507778 COMMD3-BMI1R4GMX3 469 aa2.31□□□□□ -2.04
HMGB1P28-201ENST00000507778 TET2Q6N021 2002 aaPredicted RBP2.3□□□□□ -2.04
HMGB1P28-201ENST00000507778 ARID1AO14497 2285 aa2.3□□□□□ -2.04
HMGB1P28-201ENST00000507778 IGKV1-27A0A075B6S5 117 aa2.3□□□□□ -2.04
HMGB1P28-201ENST00000507778 IGHV3-72A0A0B4J1Y9 119 aa2.3□□□□□ -2.04
HMGB1P28-201ENST00000507778 SLC22A20A6NK97 555 aa2.3□□□□□ -2.04
HMGB1P28-201ENST00000507778 TRDMT1O14717 391 aaKnown RBP2.3□□□□□ -2.04
HMGB1P28-201ENST00000507778 SLC19A2O60779 497 aa2.3□□□□□ -2.04
HMGB1P28-201ENST00000507778 SERPINB7O75635 380 aa2.3□□□□□ -2.04
HMGB1P28-201ENST00000507778 IGLV3-25P01717 112 aa2.3□□□□□ -2.04
HMGB1P28-201ENST00000507778 MT-ND4P03905 459 aa2.3□□□□□ -2.04
HMGB1P28-201ENST00000507778 CATP04040 527 aaKnown RBP2.3□□□□□ -2.04
HMGB1P28-201ENST00000507778 BCAP31P51572 246 aa2.3□□□□□ -2.04
HMGB1P28-201ENST00000507778 PSMD4P55036 377 aaKnown RBP2.3□□□□□ -2.04
HMGB1P28-201ENST00000507778 CLDN6P56747 220 aa2.3□□□□□ -2.04
HMGB1P28-201ENST00000507778 ATP6V0D1P61421 351 aa2.3□□□□□ -2.04
HMGB1P28-201ENST00000507778 IFITM3Q01628 133 aa2.3□□□□□ -2.04
HMGB1P28-201ENST00000507778 NAB1Q13506 487 aa2.3□□□□□ -2.04
HMGB1P28-201ENST00000507778 TSC22D1Q15714 1073 aa2.3□□□□□ -2.04
HMGB1P28-201ENST00000507778 LY6EQ16553 131 aa2.3□□□□□ -2.04
HMGB1P28-201ENST00000507778 PRSS8Q16651 343 aa2.3□□□□□ -2.04
HMGB1P28-201ENST00000507778 TEX30Q5JUR7 227 aa2.3□□□□□ -2.04
HMGB1P28-201ENST00000507778 ULK3Q6PHR2 472 aa2.3□□□□□ -2.04
HMGB1P28-201ENST00000507778 RAB43Q86YS6 212 aa2.3□□□□□ -2.04
HMGB1P28-201ENST00000507778 OSR2Q8N2R0 312 aa2.3□□□□□ -2.04
HMGB1P28-201ENST00000507778 OR4M1Q8NGD0 313 aa2.3□□□□□ -2.04
HMGB1P28-201ENST00000507778 RTN4IP1Q8WWV3 396 aaPredicted RBP2.3□□□□□ -2.04
HMGB1P28-201ENST00000507778 GHSRQ92847 366 aa2.3□□□□□ -2.04
HMGB1P28-201ENST00000507778 SULT4A1Q9BR01 284 aa2.3□□□□□ -2.04
HMGB1P28-201ENST00000507778 REEP1Q9H902 201 aa2.3□□□□□ -2.04
HMGB1P28-201ENST00000507778 IGKV6-21A0A0C4DH24 114 aa2.29□□□□□ -2.04
HMGB1P28-201ENST00000507778 GOLGA8JA6NMD2 632 aa2.29□□□□□ -2.04
HMGB1P28-201ENST00000507778 HACD1B0YJ81 288 aa2.29□□□□□ -2.04
HMGB1P28-201ENST00000507778 H3BN98 237 aa2.29□□□□□ -2.04
HMGB1P28-201ENST00000507778 RPL36A-HNRNPH2H7BZ11 118 aa2.29□□□□□ -2.04
HMGB1P28-201ENST00000507778 PLIN3O60664 434 aa2.29□□□□□ -2.04
HMGB1P28-201ENST00000507778 TGM6O95932 706 aa2.29□□□□□ -2.04
HMGB1P28-201ENST00000507778 PTHP01270 115 aa2.29□□□□□ -2.04
HMGB1P28-201ENST00000507778 GOLGA8HP0CJ92 632 aa2.29□□□□□ -2.04
HMGB1P28-201ENST00000507778 PRKACAP17612 351 aa2.29□□□□□ -2.04
HMGB1P28-201ENST00000507778 SRMP19623 302 aa2.29□□□□□ -2.04
HMGB1P28-201ENST00000507778 PMCHP20382 165 aa2.29□□□□□ -2.04
HMGB1P28-201ENST00000507778 GABRR2P28476 465 aa2.29□□□□□ -2.04
HMGB1P28-201ENST00000507778 KRTAP10-8P60410 259 aa2.29□□□□□ -2.04
HMGB1P28-201ENST00000507778 LCN2P80188 198 aa2.29□□□□□ -2.04
HMGB1P28-201ENST00000507778 SHHQ15465 462 aa2.29□□□□□ -2.04
HMGB1P28-201ENST00000507778 HADHQ16836 314 aaKnown RBP2.29□□□□□ -2.04
HMGB1P28-201ENST00000507778 MLIPQ5VWP3 458 aa2.29□□□□□ -2.04
HMGB1P28-201ENST00000507778 OR2T5Q6IEZ7 315 aa2.29□□□□□ -2.04
HMGB1P28-201ENST00000507778 GUSBP11Q6P575 273 aa2.29□□□□□ -2.04
HMGB1P28-201ENST00000507778 SLC25A34Q6PIV7 304 aa2.29□□□□□ -2.04
HMGB1P28-201ENST00000507778 OPN5Q6U736 354 aa2.29□□□□□ -2.04
HMGB1P28-201ENST00000507778 IGFL1Q6UW32 110 aa2.29□□□□□ -2.04
HMGB1P28-201ENST00000507778 UNQ9165/PRO28630Q6UXU0 137 aa2.29□□□□□ -2.04
HMGB1P28-201ENST00000507778 ZNF645Q8N7E2 425 aa2.29□□□□□ -2.04
HMGB1P28-201ENST00000507778 OR5T3Q8NGG3 340 aa2.29□□□□□ -2.04
HMGB1P28-201ENST00000507778 OR2T29Q8NH02 315 aa2.29□□□□□ -2.04
HMGB1P28-201ENST00000507778 KIAA1143Q96AT1 154 aaPredicted RBP2.29□□□□□ -2.04
HMGB1P28-201ENST00000507778 ZNF707Q96C28 371 aaPredicted RBP2.29□□□□□ -2.04
HMGB1P28-201ENST00000507778 KCNS3Q9BQ31 491 aa2.29□□□□□ -2.04
HMGB1P28-201ENST00000507778 ZNF2Q9BSG1 426 aaPredicted RBP2.29□□□□□ -2.04
HMGB1P28-201ENST00000507778 OR2AG1Q9H205 316 aa2.29□□□□□ -2.04
HMGB1P28-201ENST00000507778 CYP3A43Q9HB55 503 aa2.29□□□□□ -2.04
HMGB1P28-201ENST00000507778 TREX1Q9NSU2 369 aa2.29□□□□□ -2.04
HMGB1P28-201ENST00000507778 C21orf62Q9NYP8 219 aa2.29□□□□□ -2.04
HMGB1P28-201ENST00000507778 ZNF257Q9Y2Q1 563 aa2.29□□□□□ -2.04
HMGB1P28-201ENST00000507778 CBY1Q9Y3M2 126 aa2.29□□□□□ -2.04
HMGB1P28-201ENST00000507778 IGHV3-49A0A0A0MS15 119 aa2.28□□□□□ -2.04
HMGB1P28-201ENST00000507778 SPRR5A0A1B0GTR4 108 aa2.28□□□□□ -2.04
HMGB1P28-201ENST00000507778 A0A1B0GUH1 482 aa2.28□□□□□ -2.04
HMGB1P28-201ENST00000507778 H0YC42 278 aa2.28□□□□□ -2.04
HMGB1P28-201ENST00000507778 MANBAO00462 879 aa2.28□□□□□ -2.04
HMGB1P28-201ENST00000507778 CTNSO60931 367 aa2.28□□□□□ -2.04
HMGB1P28-201ENST00000507778 GATBO75879 557 aaKnown RBP2.28□□□□□ -2.04
HMGB1P28-201ENST00000507778 CYB5R3P00387 301 aaPredicted RBP2.28□□□□□ -2.04
HMGB1P28-201ENST00000507778 APLNRP35414 380 aa2.28□□□□□ -2.04
HMGB1P28-201ENST00000507778 PRLHRP49683 370 aa2.28□□□□□ -2.04
HMGB1P28-201ENST00000507778 TAS2R39P59534 338 aa2.28□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms