RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 TMPRSS9Q7Z410 1059 aa14.25□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 ADAD2Q8NCV1 583 aaKnown RBP14.25□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 PPP1R1CQ8WVI7 109 aa14.25□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 SOX7Q9BT81 388 aa14.25□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 TMEM185BQ9H7F4 350 aa14.25□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 RPH3AQ9Y2J0 694 aaPredicted RBP14.25□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 LHFPL6Q9Y693 200 aa14.25□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 SPTBN4Q9H254 2564 aa14.24□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 EFSO43281 561 aa14.24□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 BCL2L11O43521 198 aa14.24□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 P2RY4P51582 365 aa14.24□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 FOXK1P85037 733 aa14.24□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 MYBPHQ13203 477 aa14.24□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 LRRC37A5PQ49AS3 106 aa14.24□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 SLC25A53Q5H9E4 307 aa14.24□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 MOB3CQ70IA8 216 aa14.24□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 OR5D14Q8NGL3 314 aa14.24□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 VRK1Q99986 396 aaPredicted RBP14.24□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 WDR77Q9BQA1 342 aaPredicted RBP14.24□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 NICN1Q9BSH3 213 aa14.24□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 PDCD10Q9BUL8 212 aa14.24□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 SELENOIQ9C0D9 397 aa14.24□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 PISDQ9UG56 409 aa14.24□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 FRYQ5TBA9 3013 aa14.24□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 A0A0A6YYD4 124 aa14.23□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 RPL35P42766 123 aaKnown RBP14.23□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 MFAP5Q13361 173 aa14.23□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 BEX5Q5H9J7 111 aa14.23□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 RHOUQ7L0Q8 258 aa14.23□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 ANGPTL5Q86XS5 388 aa14.23□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 OR10R2Q8NGX6 335 aa14.23□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 OR51E1Q8TCB6 317 aa14.23□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 ZNF75AQ96N20 296 aa14.23□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 TRBV11-1A0A0K0K1C0 115 aa14.23□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 LINC00587B1AMM8 73 aa14.23□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 ST8SIA5O15466 376 aa14.23□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 TIAF1O95411 115 aa14.23□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 OPN1LWP04000 364 aa14.23□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 HEXBP07686 556 aa14.23□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 ERCC1P07992 297 aaPredicted RBP14.23□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 CASRP41180 1078 aa14.23□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 GSK3AP49840 483 aa14.23□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 AKR1D1P51857 326 aa14.23□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 LUMP51884 338 aaPredicted RBP14.23□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 PLPPR5Q32ZL2 321 aa14.23□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 THEM4Q5T1C6 240 aa14.23□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 ZNF574Q6ZN55 896 aaPredicted RBP14.23□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 OR5AS1Q8N127 324 aa14.23□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 OR10K1Q8NGX5 313 aa14.23□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 CYYR1Q96J86 154 aa14.23□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 C1orf147Q96MC9 270 aaPredicted RBP14.23□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 SPACA5Q96QH8 159 aa14.23□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 NUDT16L1Q9BRJ7 211 aaKnown RBP14.23□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 LPAR5Q9H1C0 372 aa14.23□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 PARD6AQ9NPB6 346 aa14.23□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 COMMD9Q9P000 198 aa14.23□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 PLEKHA6Q9Y2H5 1048 aa14.23□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 KANTRA0A1W2PQU2 76 aa14.22□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 PGA4P0DJD7 388 aa14.22□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 PGA3P0DJD8 388 aa14.22□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 ABOP16442 354 aa14.22□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 ZNF93P35789 620 aaPredicted RBP14.22□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 IL13RA1P78552 427 aa14.22□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 INPP5JQ15735 1006 aaPredicted RBP14.22□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 CCDC157Q569K6 752 aa14.22□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 AWAT2Q6E213 333 aa14.22□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 FAHD2BQ6P2I3 314 aaPredicted RBP14.22□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 ACOT7LQ6ZUV0 252 aa14.22□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 FAHD2AQ96GK7 314 aa14.22□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 MRGPRX4Q96LA9 322 aa14.22□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 ZNF319Q9P2F9 582 aa14.22□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 SRPK3Q9UPE1 567 aa14.22□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 PCNX2A6NKB5 2137 aa14.22□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 TRAV20A0A0B4J274 112 aa14.22□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 ZNF814B7Z6K7 855 aa14.22□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 SULT2B1O00204 365 aa14.22□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 PMP2P02689 132 aa14.22□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 CDAP32320 146 aa14.22□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 DLSTP36957 453 aa14.22□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 ATXN7L3Q14CW9 347 aaPredicted RBP14.22□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 NKAIN1Q4KMZ8 207 aa14.22□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 ATRAIDQ6UW56 229 aa14.22□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 RABEPKQ7Z6M1 372 aa14.22□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 TMEM104Q8NE00 496 aa14.22□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 PHB2Q99623 299 aa14.22□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 DNTTIP1Q9H147 329 aa14.22□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 KLRF1Q9NZS2 232 aa14.22□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 PPP4R1LQ9P1A2 415 aa14.22□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 TRAF3IP2O43734 574 aaPredicted RBP14.21□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 SCGNO76038 276 aa14.21□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 PLAC9Q5JTB6 97 aa14.21□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 SLC25A47Q6Q0C1 308 aa14.21□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 HOGA1Q86XE5 327 aa14.21□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 NOXO1Q8NFA2 376 aa14.21□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 SEC61A2Q9H9S3 476 aa14.21□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 ANAPC10Q9UM13 185 aa14.21□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 B3GALT1Q9Y5Z6 326 aa14.21□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 IGLV3-32A0A0A0MS00 114 aa14.21□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 DBX1A6NMT0 343 aa14.21□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 ZNF878C9JN71 531 aa14.21□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms