RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 C19orf57Q0VDD7 668 aa7.34□□□□□ -1.23
USP54-215ENST00000497106 GLIPR1L1Q6UWM5 242 aa7.34□□□□□ -1.23
USP54-215ENST00000497106 PLPP7Q8NBV4 271 aa7.34□□□□□ -1.23
USP54-215ENST00000497106 RADILQ96JH8 1075 aa7.34□□□□□ -1.23
USP54-215ENST00000497106 ABCG5Q9H222 651 aa7.34□□□□□ -1.23
USP54-215ENST00000497106 SPACA1Q9HBV2 294 aa7.34□□□□□ -1.23
USP54-215ENST00000497106 G6PC2Q9NQR9 355 aa7.34□□□□□ -1.23
USP54-215ENST00000497106 CACNG2Q9Y698 323 aa7.34□□□□□ -1.23
USP54-215ENST00000497106 SNAPC5O75971 98 aa7.34□□□□□ -1.23
USP54-215ENST00000497106 AKAIN1P0CW23 69 aa7.34□□□□□ -1.23
USP54-215ENST00000497106 PSKH1P11801 424 aa7.34□□□□□ -1.23
USP54-215ENST00000497106 GTF2F2P13984 249 aa7.34□□□□□ -1.23
USP54-215ENST00000497106 ELK1P19419 428 aa7.34□□□□□ -1.23
USP54-215ENST00000497106 TGFBR1P36897 503 aa7.34□□□□□ -1.23
USP54-215ENST00000497106 PSG4Q00888 419 aa7.34□□□□□ -1.23
USP54-215ENST00000497106 SNTB2Q13425 540 aaKnown RBP7.34□□□□□ -1.23
USP54-215ENST00000497106 PLXDC2Q6UX71 529 aa7.34□□□□□ -1.23
USP54-215ENST00000497106 CCBE1Q6UXH8 406 aaPredicted RBP7.34□□□□□ -1.23
USP54-215ENST00000497106 ANGPTL5Q86XS5 388 aa7.34□□□□□ -1.23
USP54-215ENST00000497106 OR4M1Q8NGD0 313 aa7.34□□□□□ -1.23
USP54-215ENST00000497106 OR51D1Q8NGF3 324 aa7.34□□□□□ -1.23
USP54-215ENST00000497106 UBASH3BQ8TF42 649 aa7.34□□□□□ -1.23
USP54-215ENST00000497106 CREB3L1Q96BA8 519 aa7.34□□□□□ -1.23
USP54-215ENST00000497106 NUBP2Q9Y5Y2 271 aa7.34□□□□□ -1.23
USP54-215ENST00000497106 OR5B21A6NL26 309 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 H7C1Q1 480 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 HLA-HP01893 362 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 CBR1P16152 277 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 TSPAN5P62079 268 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 PMPCAQ10713 525 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 LIN54Q6MZP7 749 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 SLC51BQ86UW2 128 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 CHPT1Q8WUD6 406 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 AMELYQ99218 206 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 CHST5Q9GZS9 411 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 ING3Q9NXR8 418 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 CHD9Q3L8U1 2897 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 ADAMTS20P59510 1910 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 MSTNO14793 375 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 CTDSPLO15194 276 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 PRAF2O60831 178 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 IL18BPO95998 194 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 EDN3P14138 238 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 OR10A3P58181 314 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 SKA3Q8IX90 412 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 GABRG1Q8N1C3 465 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 PTTG3PQ9NZH4 202 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 CLCF1Q9UBD9 225 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 SH3BGRL2Q9UJC5 107 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 AHCTF1Q8WYP5 2266 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 ADAM10O14672 748 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 ASAH1Q13510 395 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 RBM39Q14498 530 aaKnown RBP7.33□□□□□ -1.24
USP54-215ENST00000497106 PNLIPRP3Q17RR3 467 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 Q8IYB0 196 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 DNAAF1Q8NEP3 725 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 ZNRF4Q8WWF5 429 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 GPR173Q9NS66 373 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 RAXQ9Y2V3 346 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 XRCC3O43542 346 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 ALX3O95076 343 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 GSTP1P09211 210 aaKnown RBP7.33□□□□□ -1.24
USP54-215ENST00000497106 TBPP20226 339 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 TIMP3P35625 211 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 SLC22A6Q4U2R8 563 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 RGS7BPQ6MZT1 257 aaPredicted RBP7.33□□□□□ -1.24
USP54-215ENST00000497106 AKAP14Q86UN6 197 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 MFSD4AQ8N468 514 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 OR11L1Q8NGX0 322 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 NPRL2Q8WTW4 380 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 NTNG2Q96CW9 530 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 MRPS24Q96EL2 167 aaKnown RBP7.33□□□□□ -1.24
USP54-215ENST00000497106 POM121Q96HA1 1249 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 ZNF649Q9BS31 505 aa7.33□□□□□ -1.24
USP54-215ENST00000497106 A0A1W2PQ09 198 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 A6NLC8 198 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 B4DXG7 233 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 MMP15P51511 669 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 TAS2R46P59540 309 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 B2MP61769 119 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 ZMYND11Q15326 602 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 SLC25A35Q3KQZ1 300 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 C2orf76Q3KRA6 126 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 CHRFAM7AQ494W8 412 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 RNASE10Q5GAN6 216 aaKnown RBP7.32□□□□□ -1.24
USP54-215ENST00000497106 FAM27D1Q5T7N8 215 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 LILRB4Q8NHJ6 448 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 RAB3CQ96E17 227 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 GAL3ST1Q99999 423 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 SRRQ9GZT4 340 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 WNT5BQ9H1J7 359 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 LUZP4Q9P127 313 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 IGKV1D-43A0A0B4J1Z2 117 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 SSNA1O43805 119 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 RLN1P04808 185 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 AMY2BP19961 511 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 HIST1H3AP68431 136 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 NKAPLQ5M9Q1 402 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 HIST2H3PS2Q5TEC6 136 aa7.32□□□□□ -1.24
USP54-215ENST00000497106 OTPQ5XKR4 325 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms