RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 SLC22A13Q9Y226 551 aa11.85□□□□□ -0.51
PTPRF-215ENST00000496447 PPIL1Q9Y3C6 166 aa11.85□□□□□ -0.51
PTPRF-215ENST00000496447 AKAP11Q9UKA4 1901 aa11.85□□□□□ -0.51
PTPRF-215ENST00000496447 PTPRZ1P23471 2315 aaPredicted RBP11.85□□□□□ -0.51
PTPRF-215ENST00000496447 ZNF816-ZNF321PA0A0X1KG74 233 aa11.85□□□□□ -0.51
PTPRF-215ENST00000496447 FAM221AA4D161 298 aa11.85□□□□□ -0.51
PTPRF-215ENST00000496447 TERTO14746 1132 aaKnown RBP11.85□□□□□ -0.51
PTPRF-215ENST00000496447 PEX11BO96011 259 aa11.85□□□□□ -0.51
PTPRF-215ENST00000496447 RFX2P48378 723 aa11.85□□□□□ -0.51
PTPRF-215ENST00000496447 SLC38A6Q8IZM9 456 aa11.85□□□□□ -0.51
PTPRF-215ENST00000496447 CTRB1P17538 263 aa11.85□□□□□ -0.51
PTPRF-215ENST00000496447 BMP5P22003 454 aa11.85□□□□□ -0.51
PTPRF-215ENST00000496447 NKX2-1P43699 371 aaPredicted RBP11.85□□□□□ -0.51
PTPRF-215ENST00000496447 CTRB2Q6GPI1 263 aa11.85□□□□□ -0.51
PTPRF-215ENST00000496447 B9D1Q9UPM9 204 aa11.85□□□□□ -0.51
PTPRF-215ENST00000496447 F2RP25116 425 aa11.84□□□□□ -0.51
PTPRF-215ENST00000496447 TAF9Q16594 264 aa11.84□□□□□ -0.51
PTPRF-215ENST00000496447 GNRHR2Q96P88 292 aa11.84□□□□□ -0.51
PTPRF-215ENST00000496447 IKZF5Q9H5V7 419 aa11.84□□□□□ -0.51
PTPRF-215ENST00000496447 ING1Q9UK53 422 aaPredicted RBP11.84□□□□□ -0.51
PTPRF-215ENST00000496447 SMIM6P0DI80 62 aa11.84□□□□□ -0.51
PTPRF-215ENST00000496447 DUSP1P28562 367 aa11.84□□□□□ -0.51
PTPRF-215ENST00000496447 UBE2G2P60604 165 aa11.84□□□□□ -0.51
PTPRF-215ENST00000496447 PTOV1Q86YD1 416 aa11.84□□□□□ -0.51
PTPRF-215ENST00000496447 MFSD4AQ8N468 514 aa11.84□□□□□ -0.51
PTPRF-215ENST00000496447 TINAGL1Q9GZM7 467 aaPredicted RBP11.84□□□□□ -0.51
PTPRF-215ENST00000496447 COMMD5Q9GZQ3 224 aa11.84□□□□□ -0.51
PTPRF-215ENST00000496447 FLVCR1Q9Y5Y0 555 aa11.84□□□□□ -0.51
PTPRF-215ENST00000496447 ARID1BQ8NFD5 2236 aaPredicted RBP11.84□□□□□ -0.51
PTPRF-215ENST00000496447 CTSVO60911 334 aa11.84□□□□□ -0.51
PTPRF-215ENST00000496447 OPRM1P35372 400 aa11.84□□□□□ -0.51
PTPRF-215ENST00000496447 LRRC10Q5BKY1 277 aa11.84□□□□□ -0.51
PTPRF-215ENST00000496447 TMEM211Q6ICI0 200 aa11.84□□□□□ -0.51
PTPRF-215ENST00000496447 PAQR6Q6TCH4 344 aa11.84□□□□□ -0.51
PTPRF-215ENST00000496447 GALNT16Q8N428 558 aa11.84□□□□□ -0.51
PTPRF-215ENST00000496447 GPX5O75715 221 aa11.83□□□□□ -0.51
PTPRF-215ENST00000496447 MGMTP16455 207 aa11.83□□□□□ -0.51
PTPRF-215ENST00000496447 CSN1S1P47710 185 aa11.83□□□□□ -0.51
PTPRF-215ENST00000496447 ZNF83P51522 516 aa11.83□□□□□ -0.51
PTPRF-215ENST00000496447 SSX7Q7RTT5 188 aa11.83□□□□□ -0.51
PTPRF-215ENST00000496447 C15orf54Q8N8G6 183 aa11.83□□□□□ -0.51
PTPRF-215ENST00000496447 KTI12Q96EK9 354 aaPredicted RBP11.83□□□□□ -0.51
PTPRF-215ENST00000496447 SLIRPQ9GZT3 109 aaKnown RBP11.83□□□□□ -0.51
PTPRF-215ENST00000496447 SLCO1C1Q9NYB5 712 aa11.83□□□□□ -0.51
PTPRF-215ENST00000496447 CBY3A6NI87 242 aa11.83□□□□□ -0.52
PTPRF-215ENST00000496447 NDUFB3O43676 98 aa11.83□□□□□ -0.52
PTPRF-215ENST00000496447 CELA2BP08218 269 aaPredicted RBP11.83□□□□□ -0.52
PTPRF-215ENST00000496447 ZNF85Q03923 595 aa11.83□□□□□ -0.52
PTPRF-215ENST00000496447 TMEM88Q6PEY1 159 aa11.83□□□□□ -0.52
PTPRF-215ENST00000496447 THNSL2Q86YJ6 484 aa11.83□□□□□ -0.52
PTPRF-215ENST00000496447 RNF167Q9H6Y7 350 aa11.83□□□□□ -0.52
PTPRF-215ENST00000496447 TMEM235A6NFC5 223 aa11.83□□□□□ -0.52
PTPRF-215ENST00000496447 DVL1O14640 695 aa11.83□□□□□ -0.52
PTPRF-215ENST00000496447 GATCO43716 136 aaKnown RBP11.83□□□□□ -0.52
PTPRF-215ENST00000496447 HPNP05981 417 aa11.83□□□□□ -0.52
PTPRF-215ENST00000496447 PSMB3P49720 205 aa11.83□□□□□ -0.52
PTPRF-215ENST00000496447 DVL1P1P54792 670 aaPredicted RBP11.83□□□□□ -0.52
PTPRF-215ENST00000496447 ELLP55199 621 aaPredicted RBP11.83□□□□□ -0.52
PTPRF-215ENST00000496447 JMJD6Q6NYC1 403 aaPredicted RBP11.83□□□□□ -0.52
PTPRF-215ENST00000496447 CARFQ8N187 725 aa11.83□□□□□ -0.52
PTPRF-215ENST00000496447 DLL4Q9NR61 685 aa11.83□□□□□ -0.52
PTPRF-215ENST00000496447 CNTRLQ7Z7A1 2325 aa11.83□□□□□ -0.52
PTPRF-215ENST00000496447 OR1F12Q8NHA8 337 aa11.83□□□□□ -0.52
PTPRF-215ENST00000496447 LIN7CQ9NUP9 197 aaKnown RBP11.83□□□□□ -0.52
PTPRF-215ENST00000496447 CYB5R1Q9UHQ9 305 aa11.83□□□□□ -0.52
PTPRF-215ENST00000496447 LEUTXA8MZ59 168 aa11.83□□□□□ -0.52
PTPRF-215ENST00000496447 ST8SIA3O43173 380 aa11.83□□□□□ -0.52
PTPRF-215ENST00000496447 ZNF117Q03924 483 aa11.83□□□□□ -0.52
PTPRF-215ENST00000496447 OR2Z1Q8NG97 314 aa11.83□□□□□ -0.52
PTPRF-215ENST00000496447 PINX1Q96BK5 328 aaKnown RBP11.83□□□□□ -0.52
PTPRF-215ENST00000496447 ZFP64Q9NPA5 681 aa11.83□□□□□ -0.52
PTPRF-215ENST00000496447 ST3GAL6Q9Y274 331 aa11.83□□□□□ -0.52
PTPRF-215ENST00000496447 KCNE3Q9Y6H6 103 aa11.83□□□□□ -0.52
PTPRF-215ENST00000496447 A0A1B0GUH1 482 aa11.82□□□□□ -0.52
PTPRF-215ENST00000496447 ARRDC5A6NEK1 342 aa11.82□□□□□ -0.52
PTPRF-215ENST00000496447 ALG1L2C9J202 215 aa11.82□□□□□ -0.52
PTPRF-215ENST00000496447 ARPC3O15145 178 aa11.82□□□□□ -0.52
PTPRF-215ENST00000496447 OR13C5Q8NGS8 318 aa11.82□□□□□ -0.52
PTPRF-215ENST00000496447 SMIM19Q96E16 107 aa11.82□□□□□ -0.52
PTPRF-215ENST00000496447 DOCK1Q14185 1865 aa11.82□□□□□ -0.52
PTPRF-215ENST00000496447 TRGV10A0A0A0MS01 117 aa11.82□□□□□ -0.52
PTPRF-215ENST00000496447 C20orf202A1L168 122 aa11.82□□□□□ -0.52
PTPRF-215ENST00000496447 K7EQS6 105 aa11.82□□□□□ -0.52
PTPRF-215ENST00000496447 GLI4P10075 376 aa11.82□□□□□ -0.52
PTPRF-215ENST00000496447 DRD3P35462 400 aa11.82□□□□□ -0.52
PTPRF-215ENST00000496447 ERHP84090 104 aaKnown RBP11.82□□□□□ -0.52
PTPRF-215ENST00000496447 ACOT7LQ6ZUV0 252 aa11.82□□□□□ -0.52
PTPRF-215ENST00000496447 OR52I2Q8NH67 350 aa11.82□□□□□ -0.52
PTPRF-215ENST00000496447 PATZ1Q9HBE1 687 aaKnown RBP11.82□□□□□ -0.52
PTPRF-215ENST00000496447 IGLV3-16A0A075B6K0 115 aa11.82□□□□□ -0.52
PTPRF-215ENST00000496447 SNRPGP15A8MWD9 76 aa11.82□□□□□ -0.52
PTPRF-215ENST00000496447 M0QZ24 198 aa11.82□□□□□ -0.52
PTPRF-215ENST00000496447 CRYBA1P05813 215 aa11.82□□□□□ -0.52
PTPRF-215ENST00000496447 POU2F2P09086 479 aa11.82□□□□□ -0.52
PTPRF-215ENST00000496447 GPM6AP51674 278 aa11.82□□□□□ -0.52
PTPRF-215ENST00000496447 FUT6P51993 359 aa11.82□□□□□ -0.52
PTPRF-215ENST00000496447 CD300CQ08708 224 aa11.82□□□□□ -0.52
PTPRF-215ENST00000496447 KCNRGQ8N5I3 272 aa11.82□□□□□ -0.52
PTPRF-215ENST00000496447 FBXW5Q969U6 566 aa11.82□□□□□ -0.52
PTPRF-215ENST00000496447 A0A1B0GTL3 188 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms