RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 ZNF117Q03924 483 aa14.65□□□□□ -0.06
CCDC88B-209ENST00000494080 FOXF1Q12946 379 aa14.65□□□□□ -0.06
CCDC88B-209ENST00000494080 C4orf17Q53FE4 359 aa14.65□□□□□ -0.06
CCDC88B-209ENST00000494080 SHEQ5VZ18 495 aa14.65□□□□□ -0.06
CCDC88B-209ENST00000494080 OR52W1Q6IF63 320 aa14.65□□□□□ -0.06
CCDC88B-209ENST00000494080 NKAIN3Q8N8D7 197 aa14.65□□□□□ -0.06
CCDC88B-209ENST00000494080 OR11G2Q8NGC1 345 aa14.65□□□□□ -0.06
CCDC88B-209ENST00000494080 PIGTQ969N2 578 aa14.65□□□□□ -0.06
CCDC88B-209ENST00000494080 ANKRD9Q96BM1 317 aaPredicted RBP14.65□□□□□ -0.06
CCDC88B-209ENST00000494080 KIRREL1Q96J84 757 aa14.65□□□□□ -0.06
CCDC88B-209ENST00000494080 GREB1Q4ZG55 1949 aa14.65□□□□□ -0.06
CCDC88B-209ENST00000494080 OR6C68A6NDL8 312 aa14.65□□□□□ -0.06
CCDC88B-209ENST00000494080 EMC4Q5J8M3 183 aa14.65□□□□□ -0.06
CCDC88B-209ENST00000494080 OR1J1Q8NGS3 322 aa14.65□□□□□ -0.06
CCDC88B-209ENST00000494080 PAPOLGQ9BWT3 736 aaKnown RBP14.65□□□□□ -0.06
CCDC88B-209ENST00000494080 TXNIPQ9H3M7 391 aa14.65□□□□□ -0.06
CCDC88B-209ENST00000494080 NOSIPQ9Y314 301 aaKnown RBP14.65□□□□□ -0.06
CCDC88B-209ENST00000494080 MMP24Q9Y5R2 645 aa14.65□□□□□ -0.06
CCDC88B-209ENST00000494080 CENPVL1A0A0U1RR11 272 aa14.65□□□□□ -0.07
CCDC88B-209ENST00000494080 FAM166BA8MTA8 275 aa14.65□□□□□ -0.07
CCDC88B-209ENST00000494080 TAAR5O14804 337 aa14.65□□□□□ -0.07
CCDC88B-209ENST00000494080 B2MP61769 119 aa14.65□□□□□ -0.07
CCDC88B-209ENST00000494080 PPP1R1AQ13522 171 aa14.65□□□□□ -0.07
CCDC88B-209ENST00000494080 CD200R1LQ6Q8B3 271 aa14.65□□□□□ -0.07
CCDC88B-209ENST00000494080 ZNF813Q6ZN06 617 aa14.65□□□□□ -0.07
CCDC88B-209ENST00000494080 UBALD2Q8IYN6 164 aa14.65□□□□□ -0.07
CCDC88B-209ENST00000494080 NUBPLQ8TB37 319 aa14.65□□□□□ -0.07
CCDC88B-209ENST00000494080 SLC25A43Q8WUT9 341 aaPredicted RBP14.65□□□□□ -0.07
CCDC88B-209ENST00000494080 MED9Q9NWA0 146 aa14.65□□□□□ -0.07
CCDC88B-209ENST00000494080 A0A0U1RQK1 487 aa14.64□□□□□ -0.07
CCDC88B-209ENST00000494080 SLC17A2O00624 439 aa14.64□□□□□ -0.07
CCDC88B-209ENST00000494080 PHOX2AO14813 284 aa14.64□□□□□ -0.07
CCDC88B-209ENST00000494080 IGHV4-34P06331 123 aa14.64□□□□□ -0.07
CCDC88B-209ENST00000494080 MRPS34P82930 218 aaKnown RBP14.64□□□□□ -0.07
CCDC88B-209ENST00000494080 C19orf48Q6RUI8 117 aa14.64□□□□□ -0.07
CCDC88B-209ENST00000494080 GLIPR1L1Q6UWM5 242 aa14.64□□□□□ -0.07
CCDC88B-209ENST00000494080 ST8SIA1Q92185 356 aa14.64□□□□□ -0.07
CCDC88B-209ENST00000494080 ZNF764Q96H86 408 aaPredicted RBP14.64□□□□□ -0.07
CCDC88B-209ENST00000494080 THOC3Q96J01 351 aaKnown RBP14.64□□□□□ -0.07
CCDC88B-209ENST00000494080 PCOLCE2Q9UKZ9 415 aa14.64□□□□□ -0.07
CCDC88B-209ENST00000494080 PCDHGA5Q9Y5G8 931 aa14.64□□□□□ -0.07
CCDC88B-209ENST00000494080 CYR61O00622 381 aa14.64□□□□□ -0.07
CCDC88B-209ENST00000494080 SMIM6P0DI80 62 aa14.64□□□□□ -0.07
CCDC88B-209ENST00000494080 PDCD11Q14690 1871 aaKnown RBP14.64□□□□□ -0.07
CCDC88B-209ENST00000494080 ZNF239Q16600 458 aaKnown RBP14.64□□□□□ -0.07
CCDC88B-209ENST00000494080 GUCA2BQ16661 112 aa14.64□□□□□ -0.07
CCDC88B-209ENST00000494080 NANOS1Q8WY41 292 aaKnown RBP14.64□□□□□ -0.07
CCDC88B-209ENST00000494080 ISOC2Q96AB3 205 aa14.64□□□□□ -0.07
CCDC88B-209ENST00000494080 SLCO1C1Q9NYB5 712 aa14.64□□□□□ -0.07
CCDC88B-209ENST00000494080 DSPPQ9NZW4 1301 aa14.64□□□□□ -0.07
CCDC88B-209ENST00000494080 CNOT4O95628 575 aaKnown RBP14.64□□□□□ -0.07
CCDC88B-209ENST00000494080 CD46P15529 392 aa14.64□□□□□ -0.07
CCDC88B-209ENST00000494080 NHLRC3Q5JS37 347 aa14.64□□□□□ -0.07
CCDC88B-209ENST00000494080 TSEN54Q7Z6J9 526 aaKnown RBP14.64□□□□□ -0.07
CCDC88B-209ENST00000494080 TMEM229BQ8NBD8 167 aa14.64□□□□□ -0.07
CCDC88B-209ENST00000494080 CPT1CQ8TCG5 803 aa14.64□□□□□ -0.07
CCDC88B-209ENST00000494080 TAAR8Q969N4 342 aa14.64□□□□□ -0.07
CCDC88B-209ENST00000494080 SLAMF6Q96DU3 332 aa14.64□□□□□ -0.07
CCDC88B-209ENST00000494080 LRFN5Q96NI6 719 aa14.64□□□□□ -0.07
CCDC88B-209ENST00000494080 WFDC6Q9BQY6 131 aa14.64□□□□□ -0.07
CCDC88B-209ENST00000494080 SLC5A6Q9Y289 635 aa14.64□□□□□ -0.07
CCDC88B-209ENST00000494080 AKAP6Q13023 2319 aa14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 IGHV3-15A0A0B4J1V0 119 aa14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 GPANK1O95872 356 aa14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 PPIAP62937 165 aaKnown RBP14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 TMEM182Q6ZP80 229 aaPredicted RBP14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 SUMF1Q8NBK3 374 aa14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 OR51E1Q8TCB6 317 aa14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 JAM3Q9BX67 310 aa14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 TMPRSS5Q9H3S3 457 aa14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 IGHEP01854 428 aa14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 MT-ND4LP03901 98 aa14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 LIMS1P48059 325 aa14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 PCBD1P61457 104 aa14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 RPL23AP62750 156 aaKnown RBP14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 CNN3Q15417 329 aaKnown RBP14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 ZNF660Q6AZW8 331 aaPredicted RBP14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 PUSL1Q8N0Z8 303 aaKnown RBP14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 TMEM217Q8N7C4 229 aa14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 OR10D4PQ8NGN7 298 aa14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 OR1S1Q8NH92 325 aa14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 HPSE2Q8WWQ2 592 aa14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 RRNAD1Q96FB5 475 aaKnown RBP14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 SGCZQ96LD1 299 aa14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 LHX9Q9NQ69 397 aa14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 B9D1Q9UPM9 204 aa14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 ZNF587BE7ETH6 402 aa14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 GNB3P16520 340 aa14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 HAGHQ16775 308 aa14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 ANKRD16Q6P6B7 361 aa14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 MOGAT1Q96PD6 335 aa14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 SLC25A31Q9H0C2 315 aa14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 B3GALT5Q9Y2C3 310 aa14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 TMEM184BQ9Y519 407 aaPredicted RBP14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 SDK2Q58EX2 2172 aa14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 PLSCR5A0PG75 271 aa14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 SHISA3A0PJX4 238 aa14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 CTAG2O75638 210 aa14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 TBXA2RP21731 343 aa14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 DCAF12L2Q5VW00 463 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms