RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 SPOCK1Q08629 439 aa12.34□□□□□ -0.43
CUX1-209ENST00000487284 SNAI3Q3KNW1 292 aa12.34□□□□□ -0.43
CUX1-209ENST00000487284 ANKRD16Q6P6B7 361 aa12.34□□□□□ -0.43
CUX1-209ENST00000487284 PGAP1Q75T13 922 aa12.34□□□□□ -0.43
CUX1-209ENST00000487284 DPPA2Q7Z7J5 298 aa12.34□□□□□ -0.43
CUX1-209ENST00000487284 GALNT11Q8NCW6 608 aa12.34□□□□□ -0.43
CUX1-209ENST00000487284 OR1K1Q8NGR3 316 aa12.34□□□□□ -0.43
CUX1-209ENST00000487284 FOXRED1Q96CU9 486 aaPredicted RBP12.34□□□□□ -0.43
CUX1-209ENST00000487284 SFXN3Q9BWM7 321 aa12.34□□□□□ -0.43
CUX1-209ENST00000487284 OR10A2Q9H208 303 aa12.34□□□□□ -0.43
CUX1-209ENST00000487284 TMEM138Q9NPI0 162 aa12.34□□□□□ -0.43
CUX1-209ENST00000487284 PLSCR4Q9NRQ2 329 aa12.34□□□□□ -0.43
CUX1-209ENST00000487284 PROCRQ9UNN8 238 aa12.34□□□□□ -0.43
CUX1-209ENST00000487284 RHBDD3Q9Y3P4 386 aa12.34□□□□□ -0.43
CUX1-209ENST00000487284 A0A096LPE4 126 aa12.33□□□□□ -0.44
CUX1-209ENST00000487284 A0A1W2PPZ6 126 aa12.33□□□□□ -0.44
CUX1-209ENST00000487284 A6NIN4 97 aa12.33□□□□□ -0.44
CUX1-209ENST00000487284 CCL21O00585 134 aa12.33□□□□□ -0.44
CUX1-209ENST00000487284 MAGEB3O15480 346 aa12.33□□□□□ -0.44
CUX1-209ENST00000487284 RAB3AP20336 220 aa12.33□□□□□ -0.44
CUX1-209ENST00000487284 GNLYP22749 145 aa12.33□□□□□ -0.44
CUX1-209ENST00000487284 HTR2CP28335 458 aa12.33□□□□□ -0.44
CUX1-209ENST00000487284 ART1P52961 327 aa12.33□□□□□ -0.44
CUX1-209ENST00000487284 ASAH1Q13510 395 aa12.33□□□□□ -0.44
CUX1-209ENST00000487284 GFOD2Q3B7J2 385 aa12.33□□□□□ -0.44
CUX1-209ENST00000487284 TMEM211Q6ICI0 200 aa12.33□□□□□ -0.44
CUX1-209ENST00000487284 FJX1Q86VR8 437 aa12.33□□□□□ -0.44
CUX1-209ENST00000487284 CPEB3Q8NE35 698 aaKnown RBP12.33□□□□□ -0.44
CUX1-209ENST00000487284 SYNPRQ8TBG9 265 aa12.33□□□□□ -0.44
CUX1-209ENST00000487284 BCL2L2Q92843 193 aaPredicted RBP12.33□□□□□ -0.44
CUX1-209ENST00000487284 FAM3DQ96BQ1 224 aa12.33□□□□□ -0.44
CUX1-209ENST00000487284 HAVCR1Q96D42 359 aa12.33□□□□□ -0.44
CUX1-209ENST00000487284 ABHD1Q96SE0 405 aa12.33□□□□□ -0.44
CUX1-209ENST00000487284 OPN3Q9H1Y3 402 aaPredicted RBP12.33□□□□□ -0.44
CUX1-209ENST00000487284 RNF121Q9H920 327 aa12.33□□□□□ -0.44
CUX1-209ENST00000487284 PLEKHA1Q9HB21 404 aa12.33□□□□□ -0.44
CUX1-209ENST00000487284 FAIMQ9NVQ4 179 aa12.33□□□□□ -0.44
CUX1-209ENST00000487284 RHBDL2Q9NX52 303 aa12.33□□□□□ -0.44
CUX1-209ENST00000487284 CGGBP1Q9UFW8 167 aaPredicted RBP12.33□□□□□ -0.44
CUX1-209ENST00000487284 RALYQ9UKM9 306 aaKnown RBP12.33□□□□□ -0.44
CUX1-209ENST00000487284 DIDO1Q9BTC0 2240 aaKnown RBP12.33□□□□□ -0.44
CUX1-209ENST00000487284 hCG_2014768A0A024R1R8 64 aa12.32□□□□□ -0.44
CUX1-209ENST00000487284 LOC100289279A0A1B0GTE1 492 aa12.32□□□□□ -0.44
CUX1-209ENST00000487284 ZNF503-AS2A6NEH8 195 aa12.32□□□□□ -0.44
CUX1-209ENST00000487284 DHRS7CA6NNS2 312 aa12.32□□□□□ -0.44
CUX1-209ENST00000487284 CTDSPLO15194 276 aa12.32□□□□□ -0.44
CUX1-209ENST00000487284 SULT1B1O43704 296 aa12.32□□□□□ -0.44
CUX1-209ENST00000487284 CNOT4O95628 575 aaKnown RBP12.32□□□□□ -0.44
CUX1-209ENST00000487284 HLA-HP01893 362 aa12.32□□□□□ -0.44
CUX1-209ENST00000487284 ERCC1P07992 297 aaPredicted RBP12.32□□□□□ -0.44
CUX1-209ENST00000487284 BMP5P22003 454 aa12.32□□□□□ -0.44
CUX1-209ENST00000487284 THBS4P35443 961 aa12.32□□□□□ -0.44
CUX1-209ENST00000487284 ARR3P36575 388 aa12.32□□□□□ -0.44
CUX1-209ENST00000487284 POU3F4P49335 361 aa12.32□□□□□ -0.44
CUX1-209ENST00000487284 PITPNAQ00169 270 aa12.32□□□□□ -0.44
CUX1-209ENST00000487284 GLYATL3Q5SZD4 288 aa12.32□□□□□ -0.44
CUX1-209ENST00000487284 TRIQKQ629K1 86 aa12.32□□□□□ -0.44
CUX1-209ENST00000487284 CDH26Q8IXH8 852 aa12.32□□□□□ -0.44
CUX1-209ENST00000487284 OR5AS1Q8N127 324 aa12.32□□□□□ -0.44
CUX1-209ENST00000487284 ZNF610Q8N9Z0 462 aa12.32□□□□□ -0.44
CUX1-209ENST00000487284 OR51D1Q8NGF3 324 aa12.32□□□□□ -0.44
CUX1-209ENST00000487284 OR13C9Q8NGT0 318 aa12.32□□□□□ -0.44
CUX1-209ENST00000487284 RND1Q92730 232 aa12.32□□□□□ -0.44
CUX1-209ENST00000487284 TRIM63Q969Q1 353 aa12.32□□□□□ -0.44
CUX1-209ENST00000487284 SGK3Q96BR1 496 aa12.32□□□□□ -0.44
CUX1-209ENST00000487284 C10orf35Q96D05 121 aa12.32□□□□□ -0.44
CUX1-209ENST00000487284 SORCS2Q96PQ0 1159 aa12.32□□□□□ -0.44
CUX1-209ENST00000487284 METTL17Q9H7H0 456 aaPredicted RBP12.32□□□□□ -0.44
CUX1-209ENST00000487284 NOX3Q9HBY0 568 aa12.32□□□□□ -0.44
CUX1-209ENST00000487284 ZNF391Q9UJN7 358 aa12.32□□□□□ -0.44
CUX1-209ENST00000487284 MTRF1O75570 445 aaKnown RBP12.31□□□□□ -0.44
CUX1-209ENST00000487284 TPPPO94811 219 aa12.31□□□□□ -0.44
CUX1-209ENST00000487284 LCATP04180 440 aa12.31□□□□□ -0.44
CUX1-209ENST00000487284 OPRM1P35372 400 aa12.31□□□□□ -0.44
CUX1-209ENST00000487284 MNDAP41218 407 aa12.31□□□□□ -0.44
CUX1-209ENST00000487284 MMP15P51511 669 aa12.31□□□□□ -0.44
CUX1-209ENST00000487284 CAPZA1P52907 286 aa12.31□□□□□ -0.44
CUX1-209ENST00000487284 TMEM53Q6P2H8 277 aa12.31□□□□□ -0.44
CUX1-209ENST00000487284 COLCA1Q6ZS62 124 aa12.31□□□□□ -0.44
CUX1-209ENST00000487284 Q6ZT83 130 aa12.31□□□□□ -0.44
CUX1-209ENST00000487284 GDPD3Q7L5L3 318 aa12.31□□□□□ -0.44
CUX1-209ENST00000487284 LIX1LQ8IVB5 337 aa12.31□□□□□ -0.44
CUX1-209ENST00000487284 JAGN1Q8N5M9 183 aa12.31□□□□□ -0.44
CUX1-209ENST00000487284 DTX3Q8N9I9 347 aa12.31□□□□□ -0.44
CUX1-209ENST00000487284 PRR7Q8TB68 274 aa12.31□□□□□ -0.44
CUX1-209ENST00000487284 S100A16Q96FQ6 103 aaKnown RBP12.31□□□□□ -0.44
CUX1-209ENST00000487284 UQCC2Q9BRT2 126 aa12.31□□□□□ -0.44
CUX1-209ENST00000487284 RGCCQ9H4X1 137 aa12.31□□□□□ -0.44
CUX1-209ENST00000487284 TBCCD1Q9NVR7 557 aa12.31□□□□□ -0.44
CUX1-209ENST00000487284 B3GNT2Q9NY97 397 aa12.31□□□□□ -0.44
CUX1-209ENST00000487284 ZNF629Q9UEG4 869 aaPredicted RBP12.31□□□□□ -0.44
CUX1-209ENST00000487284 LOC100509620A0A075B734 347 aa12.3□□□□□ -0.44
CUX1-209ENST00000487284 ALX3O95076 343 aa12.3□□□□□ -0.44
CUX1-209ENST00000487284 TAB1Q15750 504 aa12.3□□□□□ -0.44
CUX1-209ENST00000487284 C2orf76Q3KRA6 126 aa12.3□□□□□ -0.44
CUX1-209ENST00000487284 UTS2BQ765I0 119 aa12.3□□□□□ -0.44
CUX1-209ENST00000487284 GABRG1Q8N1C3 465 aa12.3□□□□□ -0.44
CUX1-209ENST00000487284 OR52N4Q8NGI2 321 aa12.3□□□□□ -0.44
CUX1-209ENST00000487284 PP6455Q8WZ26 134 aa12.3□□□□□ -0.44
CUX1-209ENST00000487284 RFT1Q96AA3 541 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms