RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 NANOGQ9H9S0 305 aa3.15□□□□□ -1.91
PTCD3-216ENST00000487043 GNB4Q9HAV0 340 aa3.15□□□□□ -1.91
PTCD3-216ENST00000487043 PNO1Q9NRX1 252 aaKnown RBP3.15□□□□□ -1.91
PTCD3-216ENST00000487043 IMPAD1Q9NX62 359 aa3.15□□□□□ -1.91
PTCD3-216ENST00000487043 MS4A12Q9NXJ0 267 aa3.15□□□□□ -1.91
PTCD3-216ENST00000487043 ONECUT1Q9UBC0 465 aa3.15□□□□□ -1.91
PTCD3-216ENST00000487043 BTNL2Q9UIR0 455 aa3.15□□□□□ -1.91
PTCD3-216ENST00000487043 PRPF19Q9UMS4 504 aaKnown RBP3.15□□□□□ -1.91
PTCD3-216ENST00000487043 PIGLQ9Y2B2 252 aa3.15□□□□□ -1.91
PTCD3-216ENST00000487043 POLDIP2Q9Y2S7 368 aa3.15□□□□□ -1.91
PTCD3-216ENST00000487043 ASB4Q9Y574 426 aa3.15□□□□□ -1.91
PTCD3-216ENST00000487043 SLC22A7Q9Y694 548 aa3.15□□□□□ -1.91
PTCD3-216ENST00000487043 ZNF318Q5VUA4 2279 aa3.15□□□□□ -1.91
PTCD3-216ENST00000487043 GOLGA4Q13439 2230 aaKnown RBP3.15□□□□□ -1.91
PTCD3-216ENST00000487043 MUC3AQ02505 3323 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 A0A0C4DFX4 3053 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 UNC13CQ8NB66 2214 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 ASXL3Q9C0F0 2248 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 A0A096LPI6 279 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 A0A0G2JN53 185 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 IGHV5-10-1A0A0J9YXX1 117 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 FAM240BA0A1B0GVZ2 78 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 BTBD17A6NE02 478 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 ACOD1A6NK06 481 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 SNTNA6NMZ2 147 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 E9PLD3 99 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 FXYD1O00168 92 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 RFXANKO14593 260 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 CASC3O15234 703 aaKnown RBP3.14□□□□□ -1.91
PTCD3-216ENST00000487043 RS1O15537 224 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 DNAJB6O75190 326 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 ZNF253O75346 499 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 CIB2O75838 187 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 NSA2O95478 260 aaKnown RBP3.14□□□□□ -1.91
PTCD3-216ENST00000487043 CPSF4O95639 269 aaKnown RBP3.14□□□□□ -1.91
PTCD3-216ENST00000487043 STATHP02808 62 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 CD55P08174 381 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 HOXD4P09016 255 aaPredicted RBP3.14□□□□□ -1.91
PTCD3-216ENST00000487043 RNF224P0DH78 156 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 CT45A10P0DMU9 189 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 POU2F1P14859 743 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 BCL3P20749 454 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 CPN2P22792 545 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 ME2P23368 584 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 NBL1P41271 181 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 SH3BGRP55822 239 aaPredicted RBP3.14□□□□□ -1.91
PTCD3-216ENST00000487043 RPL23AP62750 156 aaKnown RBP3.14□□□□□ -1.91
PTCD3-216ENST00000487043 SKP1P63208 163 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 ZFP36L1Q07352 338 aaKnown RBP3.14□□□□□ -1.91
PTCD3-216ENST00000487043 SF3A2Q15428 464 aaKnown RBP3.14□□□□□ -1.91
PTCD3-216ENST00000487043 DEFB110Q30KQ9 67 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 TRMT5Q32P41 509 aaKnown RBP3.14□□□□□ -1.91
PTCD3-216ENST00000487043 DEFB134Q4QY38 66 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 SLC22A6Q4U2R8 563 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 PIGGQ5H8A4 983 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 SAMD4BQ5PRF9 694 aaKnown RBP3.14□□□□□ -1.91
PTCD3-216ENST00000487043 GFI1BQ5VTD9 330 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 ANKRD26P1Q6NSI1 321 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 SLC48A1Q6P1K1 146 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 CCBE1Q6UXH8 406 aaPredicted RBP3.14□□□□□ -1.91
PTCD3-216ENST00000487043 ARPINQ7Z6K5 226 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 DHDDSQ86SQ9 333 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 TPRA1Q86W33 373 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 HPS6Q86YV9 775 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 SLC35F2Q8IXU6 374 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 TTC29Q8NA56 475 aaPredicted RBP3.14□□□□□ -1.91
PTCD3-216ENST00000487043 OR8J3Q8NGG0 315 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 CDC26Q8NHZ8 85 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 OR5P2Q8WZ92 322 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 UCN3Q969E3 161 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 ITFG2Q969R8 447 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 SLC38A2Q96QD8 506 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 PANX1Q96RD7 426 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 CGREF1Q99674 301 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 SH3GL1Q99961 368 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 MAPKAP1Q9BPZ7 522 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 SOSTQ9BQB4 213 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 OPN3Q9H1Y3 402 aaPredicted RBP3.14□□□□□ -1.91
PTCD3-216ENST00000487043 PPDPFQ9H3Y8 114 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 MCCC2Q9HCC0 563 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 ANKHQ9HCJ1 492 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 LYRM4Q9HD34 91 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 TMEM9BQ9NQ34 198 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 MIEF1Q9NQG6 463 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 LYARQ9NX58 379 aaKnown RBP3.14□□□□□ -1.91
PTCD3-216ENST00000487043 CMTM6Q9NX76 183 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 SLC25A37Q9NYZ2 338 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 VAPAQ9P0L0 249 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 TMEM9Q9P0T7 183 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 ABCD2Q9UBJ2 740 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 CD300AQ9UGN4 299 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 SLC7A8Q9UHI5 535 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 PHF11Q9UIL8 331 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 CES1P1Q9UKY3 287 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 PSME2Q9UL46 239 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 AP3M1Q9Y2T2 418 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 L3MBTL1Q9Y468 752 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 GMEB1Q9Y692 573 aa3.14□□□□□ -1.91
PTCD3-216ENST00000487043 COL5A1P20908 1838 aaPredicted RBP3.14□□□□□ -1.91
PTCD3-216ENST00000487043 RP1P56715 2156 aa3.14□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms