RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 IGHV1-69DA0A0B4J2H0 117 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 CTAGE15A4D2H0 777 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 PDZK1P1A8MUH7 402 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 SLC9A3R1O14745 358 aaPredicted RBP0.95□□□□□ -2.26
VPS50-216ENST00000484954 OVOL1O14753 267 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 HUS1O60921 280 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 CDH16O75309 829 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 CTAG2O75638 210 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 CD160O95971 181 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 AGTP01019 485 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 PRB1P04280 392 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 PGA4P0DJD7 388 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 PGA3P0DJD8 388 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 PGA5P0DJD9 388 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 FABP6P51161 128 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 NDUFA8P51970 172 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 STXBP1P61764 594 aaKnown RBP0.95□□□□□ -2.26
VPS50-216ENST00000484954 HMGN5P82970 282 aaKnown RBP0.95□□□□□ -2.26
VPS50-216ENST00000484954 SEMG2Q02383 582 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 IRF8Q02556 426 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 GBE1Q04446 702 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 ZNF266Q14584 549 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 SLC9A3R2Q15599 337 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 PSMD5Q16401 504 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 SLC25A35Q3KQZ1 300 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 LUZP6Q538Z0 58 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 SPANXN2Q5MJ10 180 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 C1orf185Q5T7R7 199 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 CTAGE6Q86UF2 777 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 ERO1BQ86YB8 467 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 FAM71AQ8IYT1 594 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 BBS5Q8N3I7 341 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 OR2Z1Q8NG97 314 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 OR10W1Q8NGF6 305 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 OR5AR1Q8NGP9 310 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 OR51E1Q8TCB6 317 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 MCUR1Q96AQ8 359 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 RPEQ96AT9 228 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 EEF1AKMT3Q96AZ1 226 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 C8orf44Q96CB5 159 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 NRBF2Q96F24 287 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 KCNS1Q96KK3 526 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 PLIN2Q99541 437 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 CHP1Q99653 195 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 TMEM243Q9BU79 118 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 BEX1Q9HBH7 125 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 MRPS30Q9NP92 439 aaKnown RBP0.95□□□□□ -2.26
VPS50-216ENST00000484954 AGPAT4Q9NRZ5 378 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 ASF1BQ9NVP2 202 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 LYARQ9NX58 379 aaKnown RBP0.95□□□□□ -2.26
VPS50-216ENST00000484954 RAB23Q9ULC3 237 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 MCTS1Q9ULC4 181 aaKnown RBP0.95□□□□□ -2.26
VPS50-216ENST00000484954 RCL1Q9Y2P8 373 aaKnown RBP0.95□□□□□ -2.26
VPS50-216ENST00000484954 YARS2Q9Y2Z4 477 aaKnown RBP0.95□□□□□ -2.26
VPS50-216ENST00000484954 LOXHD1Q8IVV2 1947 aa0.95□□□□□ -2.26
VPS50-216ENST00000484954 A0A075B6Q4 140 aa0.94□□□□□ -2.26
VPS50-216ENST00000484954 IGKV1-27A0A075B6S5 117 aa0.94□□□□□ -2.26
VPS50-216ENST00000484954 IGHV3OR16-9A0A0B4J2B5 98 aa0.94□□□□□ -2.26
VPS50-216ENST00000484954 KBTBD11-OT1A0A1B0GTJ5 212 aa0.94□□□□□ -2.26
VPS50-216ENST00000484954 A0A1B0GUH1 482 aa0.94□□□□□ -2.26
VPS50-216ENST00000484954 SMCO3A2RU48 225 aa0.94□□□□□ -2.26
VPS50-216ENST00000484954 TEX46H3BTG2 121 aa0.94□□□□□ -2.26
VPS50-216ENST00000484954 ERI3O43414 337 aaKnown RBP0.94□□□□□ -2.26
VPS50-216ENST00000484954 WBP4O75554 376 aaKnown RBP0.94□□□□□ -2.26
VPS50-216ENST00000484954 HBE1P02100 147 aa0.94□□□□□ -2.26
VPS50-216ENST00000484954 ERCC1P07992 297 aaPredicted RBP0.94□□□□□ -2.26
VPS50-216ENST00000484954 FGF4P08620 206 aa0.94□□□□□ -2.26
VPS50-216ENST00000484954 OR8G3PP0DMU2 310 aa0.94□□□□□ -2.26
VPS50-216ENST00000484954 GABRG2P18507 467 aa0.94□□□□□ -2.26
VPS50-216ENST00000484954 USF1P22415 310 aaPredicted RBP0.94□□□□□ -2.26
VPS50-216ENST00000484954 GTF2E2P29084 291 aaKnown RBP0.94□□□□□ -2.26
VPS50-216ENST00000484954 FUSP35637 526 aaKnown RBP eCLIP0.94□□□□□ -2.26
VPS50-216ENST00000484954 RPS5P46782 204 aaKnown RBP0.94□□□□□ -2.26
VPS50-216ENST00000484954 RAB9AP51151 201 aa0.94□□□□□ -2.26
VPS50-216ENST00000484954 UBE2MP61081 183 aaKnown RBP0.94□□□□□ -2.26
VPS50-216ENST00000484954 DGCR6Q14129 220 aa0.94□□□□□ -2.26
VPS50-216ENST00000484954 GCSAMLQ5JQS6 135 aa0.94□□□□□ -2.26
VPS50-216ENST00000484954 MORN3Q6PF18 240 aaPredicted RBP0.94□□□□□ -2.26
VPS50-216ENST00000484954 FAM122BQ7Z309 247 aa0.94□□□□□ -2.26
VPS50-216ENST00000484954 CMC1Q7Z7K0 106 aa0.94□□□□□ -2.26
VPS50-216ENST00000484954 DAZ4Q86SG3 579 aaKnown RBP0.94□□□□□ -2.26
VPS50-216ENST00000484954 LRRC75AQ8NAA5 344 aa0.94□□□□□ -2.26
VPS50-216ENST00000484954 CCDC148Q8NFR7 591 aa0.94□□□□□ -2.26
VPS50-216ENST00000484954 OR10G6Q8NH81 332 aa0.94□□□□□ -2.26
VPS50-216ENST00000484954 GHSRQ92847 366 aa0.94□□□□□ -2.26
VPS50-216ENST00000484954 ECHDC3Q96DC8 303 aa0.94□□□□□ -2.26
VPS50-216ENST00000484954 FAM192AQ9GZU8 254 aa0.94□□□□□ -2.26
VPS50-216ENST00000484954 AUNIPQ9H7T9 357 aa0.94□□□□□ -2.26
VPS50-216ENST00000484954 PLEKHF2Q9H8W4 249 aa0.94□□□□□ -2.26
VPS50-216ENST00000484954 MYOZ1Q9NP98 299 aaPredicted RBP0.94□□□□□ -2.26
VPS50-216ENST00000484954 DAZ1Q9NQZ3 744 aaKnown RBP0.94□□□□□ -2.26
VPS50-216ENST00000484954 RAB20Q9NX57 234 aa0.94□□□□□ -2.26
VPS50-216ENST00000484954 AHSPQ9NZD4 102 aa0.94□□□□□ -2.26
VPS50-216ENST00000484954 GCNT4Q9P109 453 aa0.94□□□□□ -2.26
VPS50-216ENST00000484954 CLN8Q9UBY8 286 aa0.94□□□□□ -2.26
VPS50-216ENST00000484954 TBC1D24Q9ULP9 559 aa0.94□□□□□ -2.26
VPS50-216ENST00000484954 UBN2Q6ZU65 1347 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 PHLPP2Q6ZVD8 1323 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 VWDEQ8N2E2 1590 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 IGLV10-54A0A075B6I4 117 aa0.93□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms