RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 OR51F2Q8NH61 342 aa13.11□□□□□ -0.31
HMGA1-206ENST00000478214 TRUB1Q8WWH5 349 aaKnown RBP13.11□□□□□ -0.31
HMGA1-206ENST00000478214 STMN2Q93045 179 aa13.11□□□□□ -0.31
HMGA1-206ENST00000478214 TMEM186Q96B77 213 aa13.11□□□□□ -0.31
HMGA1-206ENST00000478214 LYZL4Q96KX0 146 aa13.11□□□□□ -0.31
HMGA1-206ENST00000478214 MNTQ99583 582 aa13.11□□□□□ -0.31
HMGA1-206ENST00000478214 APOL4Q9BPW4 351 aa13.11□□□□□ -0.31
HMGA1-206ENST00000478214 RGCCQ9H4X1 137 aa13.11□□□□□ -0.31
HMGA1-206ENST00000478214 PPP1R3EQ9H7J1 279 aa13.11□□□□□ -0.31
HMGA1-206ENST00000478214 HIF1ANQ9NWT6 349 aa13.11□□□□□ -0.31
HMGA1-206ENST00000478214 ANKRD30BLA7E2S9 258 aa13.1□□□□□ -0.31
HMGA1-206ENST00000478214 ANKRD65E5RJM6 399 aa13.1□□□□□ -0.31
HMGA1-206ENST00000478214 PHYHO14832 338 aa13.1□□□□□ -0.31
HMGA1-206ENST00000478214 PLPP2O43688 288 aa13.1□□□□□ -0.31
HMGA1-206ENST00000478214 FAM20BO75063 409 aa13.1□□□□□ -0.31
HMGA1-206ENST00000478214 ZNF254O75437 659 aa13.1□□□□□ -0.31
HMGA1-206ENST00000478214 PTBP3O95758 552 aaKnown RBP13.1□□□□□ -0.31
HMGA1-206ENST00000478214 ACKR3P25106 362 aa13.1□□□□□ -0.31
HMGA1-206ENST00000478214 DCTDP32321 178 aa13.1□□□□□ -0.31
HMGA1-206ENST00000478214 OR8B8Q15620 311 aa13.1□□□□□ -0.31
HMGA1-206ENST00000478214 ZNF181Q2M3W8 571 aa13.1□□□□□ -0.31
HMGA1-206ENST00000478214 FAM201AQ5SY85 155 aa13.1□□□□□ -0.31
HMGA1-206ENST00000478214 SSX6Q7RTT6 188 aa13.1□□□□□ -0.31
HMGA1-206ENST00000478214 KLBQ86Z14 1044 aa13.1□□□□□ -0.31
HMGA1-206ENST00000478214 SPERTQ8NA61 448 aa13.1□□□□□ -0.31
HMGA1-206ENST00000478214 ERGIC1Q969X5 290 aa13.1□□□□□ -0.31
HMGA1-206ENST00000478214 TBX5Q99593 518 aa13.1□□□□□ -0.31
HMGA1-206ENST00000478214 PBOV1Q9GZY1 135 aa13.1□□□□□ -0.31
HMGA1-206ENST00000478214 LPAR3Q9UBY5 353 aa13.1□□□□□ -0.31
HMGA1-206ENST00000478214 RHBDD3Q9Y3P4 386 aa13.1□□□□□ -0.31
HMGA1-206ENST00000478214 CUBNO60494 3623 aa13.09□□□□□ -0.31
HMGA1-206ENST00000478214 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.09□□□□□ -0.31
HMGA1-206ENST00000478214 ACOD1A6NK06 481 aa13.09□□□□□ -0.31
HMGA1-206ENST00000478214 LRRC30A6NM36 301 aa13.09□□□□□ -0.31
HMGA1-206ENST00000478214 ENTPD6O75354 484 aa13.09□□□□□ -0.31
HMGA1-206ENST00000478214 PNPP00491 289 aa13.09□□□□□ -0.31
HMGA1-206ENST00000478214 ANPEPP15144 967 aa13.09□□□□□ -0.31
HMGA1-206ENST00000478214 MDH2P40926 338 aaKnown RBP13.09□□□□□ -0.31
HMGA1-206ENST00000478214 HOXA4Q00056 320 aaPredicted RBP13.09□□□□□ -0.31
HMGA1-206ENST00000478214 MFGE8Q08431 387 aaPredicted RBP13.09□□□□□ -0.31
HMGA1-206ENST00000478214 POU4F2Q12837 409 aa13.09□□□□□ -0.31
HMGA1-206ENST00000478214 ZNF829Q3KNS6 432 aaPredicted RBP13.09□□□□□ -0.31
HMGA1-206ENST00000478214 TMEM155Q4W5P6 130 aa13.09□□□□□ -0.31
HMGA1-206ENST00000478214 PLEKHG7Q6ZR37 379 aa13.09□□□□□ -0.31
HMGA1-206ENST00000478214 SPICQ8N5J4 248 aa13.09□□□□□ -0.31
HMGA1-206ENST00000478214 CSNK2A3Q8NEV1 391 aa13.09□□□□□ -0.31
HMGA1-206ENST00000478214 OR11L1Q8NGX0 322 aa13.09□□□□□ -0.31
HMGA1-206ENST00000478214 Q8TCH9 128 aa13.09□□□□□ -0.31
HMGA1-206ENST00000478214 RFKQ969G6 155 aa13.09□□□□□ -0.31
HMGA1-206ENST00000478214 PPP1R14AQ96A00 147 aa13.09□□□□□ -0.31
HMGA1-206ENST00000478214 FN3KRPQ9HA64 309 aa13.09□□□□□ -0.31
HMGA1-206ENST00000478214 PATZ1Q9HBE1 687 aaKnown RBP13.09□□□□□ -0.31
HMGA1-206ENST00000478214 TMEM165Q9HC07 324 aa13.09□□□□□ -0.31
HMGA1-206ENST00000478214 AASSQ9UDR5 926 aa13.09□□□□□ -0.31
HMGA1-206ENST00000478214 MRM2Q9UI43 246 aaKnown RBP13.09□□□□□ -0.31
HMGA1-206ENST00000478214 PCDHB10Q9UN67 800 aa13.09□□□□□ -0.31
HMGA1-206ENST00000478214 GMPPBQ9Y5P6 360 aa13.09□□□□□ -0.31
HMGA1-206ENST00000478214 TRAV20A0A0B4J274 112 aa13.08□□□□□ -0.32
HMGA1-206ENST00000478214 A0A0U1RQV5 110 aa13.08□□□□□ -0.32
HMGA1-206ENST00000478214 A0A1W2PQL4 384 aaPredicted RBP13.08□□□□□ -0.32
HMGA1-206ENST00000478214 KIAA1324LA8MWY0 1029 aaPredicted RBP13.08□□□□□ -0.32
HMGA1-206ENST00000478214 SRSF10O75494 262 aaKnown RBP13.08□□□□□ -0.32
HMGA1-206ENST00000478214 GRPP07492 148 aa13.08□□□□□ -0.32
HMGA1-206ENST00000478214 OR2T7P0C7T2 308 aa13.08□□□□□ -0.32
HMGA1-206ENST00000478214 FAM157CP0CG43 387 aa13.08□□□□□ -0.32
HMGA1-206ENST00000478214 IRF2P14316 349 aa13.08□□□□□ -0.32
HMGA1-206ENST00000478214 HNF1AP20823 631 aa13.08□□□□□ -0.32
HMGA1-206ENST00000478214 ATP6V1E1P36543 226 aa13.08□□□□□ -0.32
HMGA1-206ENST00000478214 SNRPGP62308 76 aaKnown RBP13.08□□□□□ -0.32
HMGA1-206ENST00000478214 EGR3Q06889 387 aa13.08□□□□□ -0.32
HMGA1-206ENST00000478214 TMED1Q13445 227 aa13.08□□□□□ -0.32
HMGA1-206ENST00000478214 ZSCAN26Q16670 478 aa13.08□□□□□ -0.32
HMGA1-206ENST00000478214 C1orf87Q8N0U7 546 aa13.08□□□□□ -0.32
HMGA1-206ENST00000478214 KLHL36Q8N4N3 616 aa13.08□□□□□ -0.32
HMGA1-206ENST00000478214 PLPP7Q8NBV4 271 aa13.08□□□□□ -0.32
HMGA1-206ENST00000478214 OR10H4Q8NGA5 316 aa13.08□□□□□ -0.32
HMGA1-206ENST00000478214 OR2T27Q8NH04 317 aa13.08□□□□□ -0.32
HMGA1-206ENST00000478214 OR8S1Q8NH09 359 aa13.08□□□□□ -0.32
HMGA1-206ENST00000478214 PAPOLGQ9BWT3 736 aaKnown RBP13.08□□□□□ -0.32
HMGA1-206ENST00000478214 NUFIP1Q9UHK0 495 aaKnown RBP13.08□□□□□ -0.32
HMGA1-206ENST00000478214 ZNF391Q9UJN7 358 aa13.08□□□□□ -0.32
HMGA1-206ENST00000478214 GTF2A1LQ9UNN4 478 aa13.08□□□□□ -0.32
HMGA1-206ENST00000478214 PPIAL4EA0A075B759 164 aa13.07□□□□□ -0.32
HMGA1-206ENST00000478214 CEACAM18A8MTB9 384 aa13.07□□□□□ -0.32
HMGA1-206ENST00000478214 PPIAL4DF5H284 164 aa13.07□□□□□ -0.32
HMGA1-206ENST00000478214 PPIAL4FP0DN26 164 aa13.07□□□□□ -0.32
HMGA1-206ENST00000478214 PCMT1P22061 227 aa13.07□□□□□ -0.32
HMGA1-206ENST00000478214 ZFP36P26651 326 aaKnown RBP13.07□□□□□ -0.32
HMGA1-206ENST00000478214 GNALP38405 381 aa13.07□□□□□ -0.32
HMGA1-206ENST00000478214 SEC61A1P61619 476 aaKnown RBP13.07□□□□□ -0.32
HMGA1-206ENST00000478214 LCN2P80188 198 aa13.07□□□□□ -0.32
HMGA1-206ENST00000478214 MZT1Q08AG7 82 aa13.07□□□□□ -0.32
HMGA1-206ENST00000478214 OCLNQ16625 522 aa13.07□□□□□ -0.32
HMGA1-206ENST00000478214 SLC25A30Q5SVS4 291 aa13.07□□□□□ -0.32
HMGA1-206ENST00000478214 ZNF826PQ6ZT77 177 aa13.07□□□□□ -0.32
HMGA1-206ENST00000478214 WDR86Q86TI4 376 aa13.07□□□□□ -0.32
HMGA1-206ENST00000478214 MUC20Q8N307 709 aaPredicted RBP13.07□□□□□ -0.32
HMGA1-206ENST00000478214 C19orf18Q8NEA5 215 aa13.07□□□□□ -0.32
HMGA1-206ENST00000478214 OR51E1Q8TCB6 317 aa13.07□□□□□ -0.32
HMGA1-206ENST00000478214 TMEM246Q9BRR3 403 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms