RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 RPL15P61313 204 aaKnown RBP10.12□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 MICAQ29983 383 aa10.12□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 RUSC1-AS1Q66K80 236 aa10.12□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 SPATC1Q76KD6 591 aa10.12□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 PNLDC1Q8NA58 520 aaKnown RBP10.12□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 LY6G5BQ8NDX9 201 aa10.12□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 RNF133Q8WVZ7 376 aa10.12□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 WFDC12Q8WWY7 111 aa10.12□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 FAM71F1Q96KD3 344 aaPredicted RBP10.12□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 TSSK6Q9BXA6 273 aa10.12□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 CHIAQ9BZP6 476 aa10.12□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 TLNRD1Q9H1K6 362 aa10.12□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 RASSF4Q9H2L5 321 aa10.12□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 MAGIXQ9H6Y5 334 aa10.12□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 RNPEPL1Q9HAU8 725 aa10.12□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 C1orf123Q9NWV4 160 aa10.12□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 C1RLQ9NZP8 487 aa10.12□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 ZNF319Q9P2F9 582 aa10.12□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 BAIAP2Q9UQB8 552 aa10.12□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 POMT1Q9Y6A1 747 aa10.12□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 hCG_38984A0A1B0GV85 526 aa10.11□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 B2RBV5 119 aa10.11□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 ZNF878C9JN71 531 aa10.11□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 DVL1O14640 695 aa10.11□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 CCNB2O95067 398 aa10.11□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 ECDO95905 644 aaPredicted RBP10.11□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 GYPAP02724 150 aa10.11□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 GRPP07492 148 aa10.11□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 MUC1P15941 1255 aaPredicted RBP10.11□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 AMY2BP19961 511 aa10.11□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 BLVRAP53004 296 aa10.11□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 GRB2P62993 217 aaKnown RBP10.11□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 MS4A2Q01362 244 aa10.11□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 SRSF4Q08170 494 aaKnown RBP10.11□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 PPP1R8Q12972 351 aaKnown RBP10.11□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 PDCD1Q15116 288 aa10.11□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 OR8B8Q15620 311 aa10.11□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 FAM76BQ5HYJ3 339 aa10.11□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 ATPAF1Q5TC12 328 aaPredicted RBP10.11□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 FIP1L1Q6UN15 594 aaKnown RBP10.11□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 WDR82Q6UXN9 313 aa10.11□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 CYP2R1Q6VVX0 501 aa10.11□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 BTN2A1Q7KYR7 527 aa10.11□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 KRT74Q7RTS7 529 aa10.11□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 SLC16A9Q7RTY1 509 aa10.11□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 AQP11Q8NBQ7 271 aa10.11□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 ZDHHC16Q969W1 377 aa10.11□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 TECTBQ96PL2 329 aa10.11□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 CITED1Q99966 193 aa10.11□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 PCGF1Q9BSM1 259 aa10.11□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 COPS4Q9BT78 406 aa10.11□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 C1orf21Q9H246 121 aa10.11□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 TOR3AQ9H497 397 aa10.11□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 PPP1R3EQ9H7J1 279 aa10.11□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 CENPMQ9NSP4 180 aa10.11□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 ACOXLQ9NUZ1 547 aa10.11□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 C14orf119Q9NWQ9 140 aa10.11□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 RPUSD1Q9UJJ7 312 aaKnown RBP10.11□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 IGHV1-69DA0A0B4J2H0 117 aa10.1□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 IGHV1-69P01742 117 aa10.1□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 SPARCP09486 303 aa10.1□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 OPRL1P41146 370 aa10.1□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 IER3P46695 156 aa10.1□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 TGM4P49221 684 aa10.1□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 KRTAP10-3P60369 221 aa10.1□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 ELF3P78545 371 aaPredicted RBP10.1□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 MZT1Q08AG7 82 aa10.1□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 OLFML2AQ68BL7 652 aa10.1□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 OR2T5Q6IEZ7 315 aa10.1□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 LCN8Q6JVE9 175 aa10.1□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 METAP1DQ6UB28 335 aaPredicted RBP10.1□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 TRPM8Q7Z2W7 1104 aa10.1□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 DPY19L4Q7Z388 723 aa10.1□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 LDLRAD3Q86YD5 345 aa10.1□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 TIGD4Q8IY51 512 aa10.1□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 FGFRL1Q8N441 504 aa10.1□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 KIR3DL3Q8N743 410 aa10.1□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 BOLLQ8N9W6 283 aaKnown RBP10.1□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 OR2T33Q8NG76 320 aa10.1□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 OR1M1Q8NGA1 313 aa10.1□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 OR2T29Q8NH02 315 aa10.1□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 OR4F5Q8NH21 305 aa10.1□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 SSMEM1Q8WWF3 244 aa10.1□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 GATAD2BQ8WXI9 593 aa10.1□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 AMELYQ99218 206 aa10.1□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 ABHD6Q9BV23 337 aa10.1□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 MMADHCQ9H3L0 296 aaPredicted RBP10.1□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 CNTD2Q9H8S5 307 aa10.1□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 BEX1Q9HBH7 125 aa10.1□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 CMC2Q9NRP2 79 aa10.1□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 ARMC1Q9NVT9 282 aa10.1□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 PDP1Q9P0J1 537 aaPredicted RBP10.1□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 KPTNQ9Y664 436 aa10.1□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 IGHV3OR15-7A0A075B7D8 119 aa10.09□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.09□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 A0A1B0GW55 424 aa10.09□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 CLPSL1A2RUU4 121 aa10.09□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 SOX14O95416 240 aa10.09□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 DUX4L2P0CJ85 424 aa10.09□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 DUX4L3P0CJ86 424 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms