RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 SP140LQ9H930 580 aa10.09□□□□□ -0.79
SQSTM1-206ENST00000466342 CGGBP1Q9UFW8 167 aaPredicted RBP10.09□□□□□ -0.79
SQSTM1-206ENST00000466342 EXOGQ9Y2C4 368 aaKnown RBP10.09□□□□□ -0.79
SQSTM1-206ENST00000466342 RPL36Q9Y3U8 105 aaKnown RBP10.09□□□□□ -0.79
SQSTM1-206ENST00000466342 A0A1W2PQL4 384 aaPredicted RBP10.08□□□□□ -0.8
SQSTM1-206ENST00000466342 B4DSR2 109 aa10.08□□□□□ -0.8
SQSTM1-206ENST00000466342 LYNX1G3V0Z9 82 aa10.08□□□□□ -0.8
SQSTM1-206ENST00000466342 J3QRE1 110 aa10.08□□□□□ -0.8
SQSTM1-206ENST00000466342 TIMM8AO60220 97 aaPredicted RBP10.08□□□□□ -0.8
SQSTM1-206ENST00000466342 MT-ND5P03915 603 aa10.08□□□□□ -0.8
SQSTM1-206ENST00000466342 LYNX1P0DP58 116 aa10.08□□□□□ -0.8
SQSTM1-206ENST00000466342 HKR1P10072 659 aa10.08□□□□□ -0.8
SQSTM1-206ENST00000466342 KITLGP21583 273 aa10.08□□□□□ -0.8
SQSTM1-206ENST00000466342 ACHEP22303 614 aa10.08□□□□□ -0.8
SQSTM1-206ENST00000466342 ANOS1P23352 680 aa10.08□□□□□ -0.8
SQSTM1-206ENST00000466342 DCTDP32321 178 aa10.08□□□□□ -0.8
SQSTM1-206ENST00000466342 RIDAP52758 137 aaKnown RBP10.08□□□□□ -0.8
SQSTM1-206ENST00000466342 TMEM33P57088 247 aa10.08□□□□□ -0.8
SQSTM1-206ENST00000466342 ACTC1P68032 377 aa10.08□□□□□ -0.8
SQSTM1-206ENST00000466342 ACTA1P68133 377 aa10.08□□□□□ -0.8
SQSTM1-206ENST00000466342 GK2Q14410 553 aaPredicted RBP10.08□□□□□ -0.8
SQSTM1-206ENST00000466342 HLXQ14774 488 aaPredicted RBP10.08□□□□□ -0.8
SQSTM1-206ENST00000466342 SMN1Q16637 294 aaKnown RBP10.08□□□□□ -0.8
SQSTM1-206ENST00000466342 ALKBH6Q3KRA9 238 aa10.08□□□□□ -0.8
SQSTM1-206ENST00000466342 GLYATL3Q5SZD4 288 aa10.08□□□□□ -0.8
SQSTM1-206ENST00000466342 CMBLQ96DG6 245 aa10.08□□□□□ -0.8
SQSTM1-206ENST00000466342 OPA3Q9H6K4 179 aa10.08□□□□□ -0.8
SQSTM1-206ENST00000466342 AMBNQ9NP70 447 aa10.08□□□□□ -0.8
SQSTM1-206ENST00000466342 CYSLTR2Q9NS75 346 aa10.08□□□□□ -0.8
SQSTM1-206ENST00000466342 MRPS18AQ9NVS2 196 aaKnown RBP10.08□□□□□ -0.8
SQSTM1-206ENST00000466342 NKIRAS2Q9NYR9 191 aa10.08□□□□□ -0.8
SQSTM1-206ENST00000466342 PURGQ9UJV8 347 aaKnown RBP10.08□□□□□ -0.8
SQSTM1-206ENST00000466342 IKZF2Q9UKS7 526 aa10.08□□□□□ -0.8
SQSTM1-206ENST00000466342 PLSCR5A0PG75 271 aa10.07□□□□□ -0.8
SQSTM1-206ENST00000466342 C5orf63A6NC05 138 aa10.07□□□□□ -0.8
SQSTM1-206ENST00000466342 C17orf100A8MU93 164 aa10.07□□□□□ -0.8
SQSTM1-206ENST00000466342 TBX1O43435 398 aa10.07□□□□□ -0.8
SQSTM1-206ENST00000466342 XRCC2O43543 280 aa10.07□□□□□ -0.8
SQSTM1-206ENST00000466342 HPXP02790 462 aa10.07□□□□□ -0.8
SQSTM1-206ENST00000466342 KRT8P05787 483 aa10.07□□□□□ -0.8
SQSTM1-206ENST00000466342 NAT2P11245 290 aa10.07□□□□□ -0.8
SQSTM1-206ENST00000466342 EPHA1P21709 976 aa10.07□□□□□ -0.8
SQSTM1-206ENST00000466342 COL8A2P25067 703 aa10.07□□□□□ -0.8
SQSTM1-206ENST00000466342 LIPAP38571 399 aa10.07□□□□□ -0.8
SQSTM1-206ENST00000466342 MMP15P51511 669 aa10.07□□□□□ -0.8
SQSTM1-206ENST00000466342 ZNF85Q03923 595 aa10.07□□□□□ -0.8
SQSTM1-206ENST00000466342 ZNF92Q03936 586 aa10.07□□□□□ -0.8
SQSTM1-206ENST00000466342 RAB40BQ12829 278 aa10.07□□□□□ -0.8
SQSTM1-206ENST00000466342 CDK5R2Q13319 367 aa10.07□□□□□ -0.8
SQSTM1-206ENST00000466342 ZNF829Q3KNS6 432 aaPredicted RBP10.07□□□□□ -0.8
SQSTM1-206ENST00000466342 PCGF3Q3KNV8 242 aa10.07□□□□□ -0.8
SQSTM1-206ENST00000466342 IZUMO2Q6UXV1 221 aa10.07□□□□□ -0.8
SQSTM1-206ENST00000466342 FAM57BQ71RH2 274 aa10.07□□□□□ -0.8
SQSTM1-206ENST00000466342 PGAP1Q75T13 922 aa10.07□□□□□ -0.8
SQSTM1-206ENST00000466342 MRPL21Q7Z2W9 205 aaKnown RBP10.07□□□□□ -0.8
SQSTM1-206ENST00000466342 ACBD7Q8N6N7 88 aa10.07□□□□□ -0.8
SQSTM1-206ENST00000466342 OR52H1Q8NGJ2 320 aa10.07□□□□□ -0.8
SQSTM1-206ENST00000466342 OR2AE1Q8NHA4 323 aa10.07□□□□□ -0.8
SQSTM1-206ENST00000466342 FBLIM1Q8WUP2 373 aa10.07□□□□□ -0.8
SQSTM1-206ENST00000466342 LGALS12Q96DT0 336 aa10.07□□□□□ -0.8
SQSTM1-206ENST00000466342 PGAM5Q96HS1 289 aa10.07□□□□□ -0.8
SQSTM1-206ENST00000466342 SUCNR1Q9BXA5 334 aa10.07□□□□□ -0.8
SQSTM1-206ENST00000466342 OR10A2Q9H208 303 aa10.07□□□□□ -0.8
SQSTM1-206ENST00000466342 BRD7Q9NPI1 651 aa10.07□□□□□ -0.8
SQSTM1-206ENST00000466342 HIF1ANQ9NWT6 349 aa10.07□□□□□ -0.8
SQSTM1-206ENST00000466342 FAM206AQ9NX38 181 aa10.07□□□□□ -0.8
SQSTM1-206ENST00000466342 MRM2Q9UI43 246 aaKnown RBP10.07□□□□□ -0.8
SQSTM1-206ENST00000466342 N6AMT1Q9Y5N5 214 aa10.07□□□□□ -0.8
SQSTM1-206ENST00000466342 RYR3Q15413 4870 aa10.07□□□□□ -0.8
SQSTM1-206ENST00000466342 TMEM269A0A1B0GVZ9 245 aa10.06□□□□□ -0.8
SQSTM1-206ENST00000466342 DAPL1A0PJW8 107 aa10.06□□□□□ -0.8
SQSTM1-206ENST00000466342 ZSCAN5BA6NJL1 495 aa10.06□□□□□ -0.8
SQSTM1-206ENST00000466342 ACOD1A6NK06 481 aa10.06□□□□□ -0.8
SQSTM1-206ENST00000466342 IQCF6A8MYZ5 107 aa10.06□□□□□ -0.8
SQSTM1-206ENST00000466342 MAGEB4O15481 346 aaPredicted RBP10.06□□□□□ -0.8
SQSTM1-206ENST00000466342 SRSF10O75494 262 aaKnown RBP10.06□□□□□ -0.8
SQSTM1-206ENST00000466342 SULT1C4O75897 302 aa10.06□□□□□ -0.8
SQSTM1-206ENST00000466342 FADS2O95864 444 aaKnown RBP10.06□□□□□ -0.8
SQSTM1-206ENST00000466342 IGHA1P01876 353 aa10.06□□□□□ -0.8
SQSTM1-206ENST00000466342 SELEP16581 610 aa10.06□□□□□ -0.8
SQSTM1-206ENST00000466342 ZFP36P26651 326 aaKnown RBP10.06□□□□□ -0.8
SQSTM1-206ENST00000466342 VHLP40337 213 aa10.06□□□□□ -0.8
SQSTM1-206ENST00000466342 GPR6P46095 362 aaPredicted RBP10.06□□□□□ -0.8
SQSTM1-206ENST00000466342 HSPA13P48723 471 aa10.06□□□□□ -0.8
SQSTM1-206ENST00000466342 ZNF81P51508 661 aa10.06□□□□□ -0.8
SQSTM1-206ENST00000466342 MMP16P51512 607 aa10.06□□□□□ -0.8
SQSTM1-206ENST00000466342 TIGD6Q17RP2 521 aa10.06□□□□□ -0.8
SQSTM1-206ENST00000466342 KLHL22Q53GT1 634 aa10.06□□□□□ -0.8
SQSTM1-206ENST00000466342 FBLN7Q53RD9 439 aa10.06□□□□□ -0.8
SQSTM1-206ENST00000466342 ZMAT1Q5H9K5 638 aa10.06□□□□□ -0.8
SQSTM1-206ENST00000466342 ZNF684Q5T5D7 378 aa10.06□□□□□ -0.8
SQSTM1-206ENST00000466342 OR2T2Q6IF00 324 aa10.06□□□□□ -0.8
SQSTM1-206ENST00000466342 PLEKHG7Q6ZR37 379 aa10.06□□□□□ -0.8
SQSTM1-206ENST00000466342 THAP5Q7Z6K1 395 aa10.06□□□□□ -0.8
SQSTM1-206ENST00000466342 OR5AS1Q8N127 324 aa10.06□□□□□ -0.8
SQSTM1-206ENST00000466342 ZDHHC22Q8N966 263 aa10.06□□□□□ -0.8
SQSTM1-206ENST00000466342 OR52I1Q8NGK6 324 aa10.06□□□□□ -0.8
SQSTM1-206ENST00000466342 GTF3AQ92664 365 aaKnown RBP10.06□□□□□ -0.8
SQSTM1-206ENST00000466342 SPSB4Q96A44 273 aa10.06□□□□□ -0.8
SQSTM1-206ENST00000466342 TMEM186Q96B77 213 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms