RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 RHOUQ7L0Q8 258 aa13.29□□□□□ -0.28
COL7A1-204ENST00000462475 ZNF511Q8NB15 262 aa13.29□□□□□ -0.28
COL7A1-204ENST00000462475 ST8SIA4Q92187 359 aa13.29□□□□□ -0.28
COL7A1-204ENST00000462475 SPSB4Q96A44 273 aa13.29□□□□□ -0.28
COL7A1-204ENST00000462475 KCNJ15Q99712 375 aa13.29□□□□□ -0.28
COL7A1-204ENST00000462475 TRIM15Q9C019 465 aa13.29□□□□□ -0.28
COL7A1-204ENST00000462475 FAM53CQ9NYF3 392 aa13.29□□□□□ -0.28
COL7A1-204ENST00000462475 IL20Q9NYY1 176 aa13.29□□□□□ -0.28
COL7A1-204ENST00000462475 WNK1Q9H4A3 2382 aa13.28□□□□□ -0.28
COL7A1-204ENST00000462475 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.28□□□□□ -0.28
COL7A1-204ENST00000462475 ZNF878C9JN71 531 aa13.28□□□□□ -0.28
COL7A1-204ENST00000462475 GPR137BO60478 399 aa13.28□□□□□ -0.28
COL7A1-204ENST00000462475 CLUP10909 449 aa13.28□□□□□ -0.28
COL7A1-204ENST00000462475 CSNK2BP67870 215 aa13.28□□□□□ -0.28
COL7A1-204ENST00000462475 TAF13Q15543 124 aa13.28□□□□□ -0.28
COL7A1-204ENST00000462475 SAMD4BQ5PRF9 694 aaKnown RBP13.28□□□□□ -0.28
COL7A1-204ENST00000462475 ZNF770Q6IQ21 691 aaPredicted RBP13.28□□□□□ -0.28
COL7A1-204ENST00000462475 LDLRAD3Q86YD5 345 aa13.28□□□□□ -0.28
COL7A1-204ENST00000462475 C11orf53Q8IXP5 236 aa13.28□□□□□ -0.28
COL7A1-204ENST00000462475 PGAM4Q8N0Y7 254 aa13.28□□□□□ -0.28
COL7A1-204ENST00000462475 PIP4P2Q8N4L2 257 aa13.28□□□□□ -0.28
COL7A1-204ENST00000462475 SCCPDHQ8NBX0 429 aa13.28□□□□□ -0.28
COL7A1-204ENST00000462475 OR8S1Q8NH09 359 aa13.28□□□□□ -0.28
COL7A1-204ENST00000462475 TBC1D15Q8TC07 691 aa13.28□□□□□ -0.28
COL7A1-204ENST00000462475 DYRK2Q92630 601 aa13.28□□□□□ -0.28
COL7A1-204ENST00000462475 CCT8L2Q96SF2 557 aa13.28□□□□□ -0.28
COL7A1-204ENST00000462475 CDRT15Q96T59 188 aa13.28□□□□□ -0.28
COL7A1-204ENST00000462475 FAM107BQ9H098 131 aa13.28□□□□□ -0.28
COL7A1-204ENST00000462475 OPA3Q9H6K4 179 aa13.28□□□□□ -0.28
COL7A1-204ENST00000462475 TBC1D23Q9NUY8 699 aa13.28□□□□□ -0.28
COL7A1-204ENST00000462475 C14orf119Q9NWQ9 140 aa13.28□□□□□ -0.28
COL7A1-204ENST00000462475 KAAG1Q9UBP8 84 aa13.28□□□□□ -0.28
COL7A1-204ENST00000462475 RPUSD1Q9UJJ7 312 aaKnown RBP13.28□□□□□ -0.28
COL7A1-204ENST00000462475 RNF114Q9Y508 228 aa13.28□□□□□ -0.28
COL7A1-204ENST00000462475 DHRS12A0PJE2 317 aa13.27□□□□□ -0.29
COL7A1-204ENST00000462475 ANKRD30BLA7E2S9 258 aa13.27□□□□□ -0.29
COL7A1-204ENST00000462475 TNFRSF11BO00300 401 aa13.27□□□□□ -0.29
COL7A1-204ENST00000462475 ZNF593O00488 134 aaPredicted RBP13.27□□□□□ -0.29
COL7A1-204ENST00000462475 TBX1O43435 398 aa13.27□□□□□ -0.29
COL7A1-204ENST00000462475 XRCC2O43543 280 aa13.27□□□□□ -0.29
COL7A1-204ENST00000462475 GASTP01350 101 aa13.27□□□□□ -0.29
COL7A1-204ENST00000462475 SPI1P17947 270 aa13.27□□□□□ -0.29
COL7A1-204ENST00000462475 FMO3P31513 532 aa13.27□□□□□ -0.29
COL7A1-204ENST00000462475 CX3CR1P49238 355 aa13.27□□□□□ -0.29
COL7A1-204ENST00000462475 HMGA2P52926 109 aa13.27□□□□□ -0.29
COL7A1-204ENST00000462475 RPL15P61313 204 aaKnown RBP13.27□□□□□ -0.29
COL7A1-204ENST00000462475 FAM3AP98173 230 aa13.27□□□□□ -0.29
COL7A1-204ENST00000462475 MZT1Q08AG7 82 aa13.27□□□□□ -0.29
COL7A1-204ENST00000462475 WDR38Q5JTN6 314 aa13.27□□□□□ -0.29
COL7A1-204ENST00000462475 RASSF6Q6ZTQ3 369 aa13.27□□□□□ -0.29
COL7A1-204ENST00000462475 SLC16A9Q7RTY1 509 aa13.27□□□□□ -0.29
COL7A1-204ENST00000462475 VMO1Q7Z5L0 202 aa13.27□□□□□ -0.29
COL7A1-204ENST00000462475 FAM216BQ8N7L0 139 aa13.27□□□□□ -0.29
COL7A1-204ENST00000462475 OR4Q3Q8NH05 313 aa13.27□□□□□ -0.29
COL7A1-204ENST00000462475 LINC01006Q8NI28 216 aa13.27□□□□□ -0.29
COL7A1-204ENST00000462475 LRRC29Q8WV35 223 aa13.27□□□□□ -0.29
COL7A1-204ENST00000462475 SEH1LQ96EE3 360 aa13.27□□□□□ -0.29
COL7A1-204ENST00000462475 CCL13Q99616 98 aa13.27□□□□□ -0.29
COL7A1-204ENST00000462475 TSSK6Q9BXA6 273 aa13.27□□□□□ -0.29
COL7A1-204ENST00000462475 NMNAT2Q9BZQ4 307 aa13.27□□□□□ -0.29
COL7A1-204ENST00000462475 PPP1R3EQ9H7J1 279 aa13.27□□□□□ -0.29
COL7A1-204ENST00000462475 MED4Q9NPJ6 270 aa13.27□□□□□ -0.29
COL7A1-204ENST00000462475 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.26□□□□□ -0.29
COL7A1-204ENST00000462475 M0QZ24 198 aa13.26□□□□□ -0.29
COL7A1-204ENST00000462475 SNX3O60493 162 aa13.26□□□□□ -0.29
COL7A1-204ENST00000462475 KRT36O76013 467 aa13.26□□□□□ -0.29
COL7A1-204ENST00000462475 SOX14O95416 240 aa13.26□□□□□ -0.29
COL7A1-204ENST00000462475 ECDO95905 644 aaPredicted RBP13.26□□□□□ -0.29
COL7A1-204ENST00000462475 ANXA2P07355 339 aaKnown RBP13.26□□□□□ -0.29
COL7A1-204ENST00000462475 DDOSTP39656 456 aa13.26□□□□□ -0.29
COL7A1-204ENST00000462475 IER3P46695 156 aa13.26□□□□□ -0.29
COL7A1-204ENST00000462475 SLC25A1P53007 311 aa13.26□□□□□ -0.29
COL7A1-204ENST00000462475 PRB3Q04118 309 aaPredicted RBP13.26□□□□□ -0.29
COL7A1-204ENST00000462475 PPP1R8Q12972 351 aaKnown RBP13.26□□□□□ -0.29
COL7A1-204ENST00000462475 C11orf91Q3C1V1 193 aa13.26□□□□□ -0.29
COL7A1-204ENST00000462475 CDONQ4KMG0 1287 aa13.26□□□□□ -0.29
COL7A1-204ENST00000462475 ASPHD2Q6ICH7 369 aa13.26□□□□□ -0.29
COL7A1-204ENST00000462475 AQP11Q8NBQ7 271 aa13.26□□□□□ -0.29
COL7A1-204ENST00000462475 OR1M1Q8NGA1 313 aa13.26□□□□□ -0.29
COL7A1-204ENST00000462475 OR6K6Q8NGW6 343 aa13.26□□□□□ -0.29
COL7A1-204ENST00000462475 REEP6Q96HR9 211 aa13.26□□□□□ -0.29
COL7A1-204ENST00000462475 SEMA6AQ9H2E6 1030 aa13.26□□□□□ -0.29
COL7A1-204ENST00000462475 MMP27Q9H306 513 aa13.26□□□□□ -0.29
COL7A1-204ENST00000462475 CNTD2Q9H8S5 307 aa13.26□□□□□ -0.29
COL7A1-204ENST00000462475 RNPEPL1Q9HAU8 725 aa13.26□□□□□ -0.29
COL7A1-204ENST00000462475 ARMC1Q9NVT9 282 aa13.26□□□□□ -0.29
COL7A1-204ENST00000462475 ONECUT1Q9UBC0 465 aa13.26□□□□□ -0.29
COL7A1-204ENST00000462475 KPTNQ9Y664 436 aa13.26□□□□□ -0.29
COL7A1-204ENST00000462475 hCG_38984A0A1B0GV85 526 aa13.25□□□□□ -0.29
COL7A1-204ENST00000462475 ACOT8O14734 319 aa13.25□□□□□ -0.29
COL7A1-204ENST00000462475 CCNB2O95067 398 aa13.25□□□□□ -0.29
COL7A1-204ENST00000462475 MUC1P15941 1255 aaPredicted RBP13.25□□□□□ -0.29
COL7A1-204ENST00000462475 ATP6V1B2P21281 511 aa13.25□□□□□ -0.29
COL7A1-204ENST00000462475 GRK5P34947 590 aa13.25□□□□□ -0.29
COL7A1-204ENST00000462475 DLX1P56177 255 aa13.25□□□□□ -0.29
COL7A1-204ENST00000462475 PROK1P58294 105 aa13.25□□□□□ -0.29
COL7A1-204ENST00000462475 EIF2B1Q14232 305 aaKnown RBP13.25□□□□□ -0.29
COL7A1-204ENST00000462475 TIGD6Q17RP2 521 aa13.25□□□□□ -0.29
COL7A1-204ENST00000462475 MICBQ29980 383 aa13.25□□□□□ -0.29
COL7A1-204ENST00000462475 KLHL12Q53G59 568 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms