RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 SLC22A31A6NKX4 558 aa10.97□□□□□ -0.65
HMGB3-204ENST00000448905 ZNF593O00488 134 aaPredicted RBP10.97□□□□□ -0.65
HMGB3-204ENST00000448905 PAHP00439 452 aa10.97□□□□□ -0.65
HMGB3-204ENST00000448905 OTX1P32242 354 aaPredicted RBP10.97□□□□□ -0.65
HMGB3-204ENST00000448905 PYCR1P32322 319 aa10.97□□□□□ -0.65
HMGB3-204ENST00000448905 GNALP38405 381 aa10.97□□□□□ -0.65
HMGB3-204ENST00000448905 GSSP48637 474 aa10.97□□□□□ -0.65
HMGB3-204ENST00000448905 GRB2P62993 217 aaKnown RBP10.97□□□□□ -0.65
HMGB3-204ENST00000448905 LRRC10Q5BKY1 277 aa10.97□□□□□ -0.65
HMGB3-204ENST00000448905 DHRS7BQ6IAN0 325 aaPredicted RBP10.97□□□□□ -0.65
HMGB3-204ENST00000448905 RHOUQ7L0Q8 258 aa10.97□□□□□ -0.65
HMGB3-204ENST00000448905 VMO1Q7Z5L0 202 aa10.97□□□□□ -0.65
HMGB3-204ENST00000448905 CPLX4Q7Z7G2 160 aa10.97□□□□□ -0.65
HMGB3-204ENST00000448905 PDZD9Q8IXQ8 264 aa10.97□□□□□ -0.65
HMGB3-204ENST00000448905 DTX3Q8N9I9 347 aa10.97□□□□□ -0.65
HMGB3-204ENST00000448905 C12orf43Q96C57 262 aaKnown RBP10.97□□□□□ -0.65
HMGB3-204ENST00000448905 SLAMF6Q96DU3 332 aa10.97□□□□□ -0.65
HMGB3-204ENST00000448905 CCL13Q99616 98 aa10.97□□□□□ -0.65
HMGB3-204ENST00000448905 PKP2Q99959 881 aa10.97□□□□□ -0.65
HMGB3-204ENST00000448905 FN3KQ9H479 309 aa10.97□□□□□ -0.65
HMGB3-204ENST00000448905 C16orf95Q9H693 158 aa10.97□□□□□ -0.65
HMGB3-204ENST00000448905 CD300AQ9UGN4 299 aa10.97□□□□□ -0.65
HMGB3-204ENST00000448905 MAGEL2Q9UJ55 1249 aa10.97□□□□□ -0.65
HMGB3-204ENST00000448905 ANKRD61A6NGH8 418 aa10.96□□□□□ -0.65
HMGB3-204ENST00000448905 TVP23AA6NH52 213 aa10.96□□□□□ -0.65
HMGB3-204ENST00000448905 ZNF878C9JN71 531 aa10.96□□□□□ -0.65
HMGB3-204ENST00000448905 TBX1O43435 398 aa10.96□□□□□ -0.65
HMGB3-204ENST00000448905 SASH3O75995 380 aa10.96□□□□□ -0.65
HMGB3-204ENST00000448905 SPARCP09486 303 aa10.96□□□□□ -0.65
HMGB3-204ENST00000448905 HSD11B1P28845 292 aa10.96□□□□□ -0.65
HMGB3-204ENST00000448905 PRDX6P30041 224 aa10.96□□□□□ -0.65
HMGB3-204ENST00000448905 ENTPD1P49961 510 aa10.96□□□□□ -0.65
HMGB3-204ENST00000448905 PROK1P58294 105 aa10.96□□□□□ -0.65
HMGB3-204ENST00000448905 TIGD6Q17RP2 521 aa10.96□□□□□ -0.65
HMGB3-204ENST00000448905 TEX30Q5JUR7 227 aa10.96□□□□□ -0.65
HMGB3-204ENST00000448905 METAP1DQ6UB28 335 aaPredicted RBP10.96□□□□□ -0.65
HMGB3-204ENST00000448905 C1orf122Q6ZSJ8 110 aa10.96□□□□□ -0.65
HMGB3-204ENST00000448905 GALNT4Q8N4A0 578 aa10.96□□□□□ -0.65
HMGB3-204ENST00000448905 RNF148Q8N7C7 305 aa10.96□□□□□ -0.65
HMGB3-204ENST00000448905 CYB561A3Q8NBI2 242 aa10.96□□□□□ -0.65
HMGB3-204ENST00000448905 LY6G5BQ8NDX9 201 aa10.96□□□□□ -0.65
HMGB3-204ENST00000448905 OR56B2PQ8NGI1 322 aa10.96□□□□□ -0.65
HMGB3-204ENST00000448905 OR52H1Q8NGJ2 320 aa10.96□□□□□ -0.65
HMGB3-204ENST00000448905 LRRC29Q8WV35 223 aa10.96□□□□□ -0.65
HMGB3-204ENST00000448905 SPSB4Q96A44 273 aa10.96□□□□□ -0.65
HMGB3-204ENST00000448905 MED30Q96HR3 178 aa10.96□□□□□ -0.65
HMGB3-204ENST00000448905 NSMCE2Q96MF7 247 aa10.96□□□□□ -0.65
HMGB3-204ENST00000448905 MICU1Q9BPX6 476 aa10.96□□□□□ -0.65
HMGB3-204ENST00000448905 TOR3AQ9H497 397 aa10.96□□□□□ -0.65
HMGB3-204ENST00000448905 IL1RAPQ9NPH3 570 aa10.96□□□□□ -0.65
HMGB3-204ENST00000448905 CDH10Q9Y6N8 788 aa10.96□□□□□ -0.65
HMGB3-204ENST00000448905 V9GYQ6 96 aa10.96□□□□□ -0.65
HMGB3-204ENST00000448905 TANC2Q9HCD6 1990 aa10.96□□□□□ -0.66
HMGB3-204ENST00000448905 IGHV3OR15-7A0A075B7D8 119 aa10.95□□□□□ -0.66
HMGB3-204ENST00000448905 ZNF816-ZNF321PA0A0X1KG74 233 aa10.95□□□□□ -0.66
HMGB3-204ENST00000448905 C5orf63A6NC05 138 aa10.95□□□□□ -0.66
HMGB3-204ENST00000448905 ANXA2P2A6NMY6 339 aa10.95□□□□□ -0.66
HMGB3-204ENST00000448905 ANXA2P07355 339 aaKnown RBP10.95□□□□□ -0.66
HMGB3-204ENST00000448905 SLC2A1P11166 492 aa10.95□□□□□ -0.66
HMGB3-204ENST00000448905 RPS27P42677 84 aaKnown RBP10.95□□□□□ -0.66
HMGB3-204ENST00000448905 HOXA4Q00056 320 aaPredicted RBP10.95□□□□□ -0.66
HMGB3-204ENST00000448905 IL5RAQ01344 420 aa10.95□□□□□ -0.66
HMGB3-204ENST00000448905 DBPQ10586 325 aaPredicted RBP10.95□□□□□ -0.66
HMGB3-204ENST00000448905 BLMHQ13867 455 aa10.95□□□□□ -0.66
HMGB3-204ENST00000448905 C2orf68Q2NKX9 166 aa10.95□□□□□ -0.66
HMGB3-204ENST00000448905 SAMD4BQ5PRF9 694 aaKnown RBP10.95□□□□□ -0.66
HMGB3-204ENST00000448905 PGBD2Q6P3X8 592 aa10.95□□□□□ -0.66
HMGB3-204ENST00000448905 HIST2H2ABQ8IUE6 130 aaPredicted RBP10.95□□□□□ -0.66
HMGB3-204ENST00000448905 ZDHHC21Q8IVQ6 265 aa10.95□□□□□ -0.66
HMGB3-204ENST00000448905 PIP4P2Q8N4L2 257 aa10.95□□□□□ -0.66
HMGB3-204ENST00000448905 CSNK2A3Q8NEV1 391 aa10.95□□□□□ -0.66
HMGB3-204ENST00000448905 OR1M1Q8NGA1 313 aa10.95□□□□□ -0.66
HMGB3-204ENST00000448905 OR51L1Q8NGJ5 315 aa10.95□□□□□ -0.66
HMGB3-204ENST00000448905 OR9Q1Q8NGQ5 310 aa10.95□□□□□ -0.66
HMGB3-204ENST00000448905 OR5R1Q8NH85 324 aa10.95□□□□□ -0.66
HMGB3-204ENST00000448905 FAM110DQ8TAY7 271 aaPredicted RBP10.95□□□□□ -0.66
HMGB3-204ENST00000448905 FAM234AQ9H0X4 552 aa10.95□□□□□ -0.66
HMGB3-204ENST00000448905 EGLN3Q9H6Z9 239 aa10.95□□□□□ -0.66
HMGB3-204ENST00000448905 IL20Q9NYY1 176 aa10.95□□□□□ -0.66
HMGB3-204ENST00000448905 DNAJB11Q9UBS4 358 aa10.95□□□□□ -0.66
HMGB3-204ENST00000448905 VPREB3Q9UKI3 123 aa10.95□□□□□ -0.66
HMGB3-204ENST00000448905 PRPF19Q9UMS4 504 aaKnown RBP10.95□□□□□ -0.66
HMGB3-204ENST00000448905 BAIAP2Q9UQB8 552 aa10.95□□□□□ -0.66
HMGB3-204ENST00000448905 TNFRSF11BO00300 401 aa10.94□□□□□ -0.66
HMGB3-204ENST00000448905 CDIPTO14735 213 aa10.94□□□□□ -0.66
HMGB3-204ENST00000448905 NPFFO15130 113 aa10.94□□□□□ -0.66
HMGB3-204ENST00000448905 TSPAN9O75954 239 aa10.94□□□□□ -0.66
HMGB3-204ENST00000448905 IFNGP01579 166 aa10.94□□□□□ -0.66
HMGB3-204ENST00000448905 CSF1P09603 554 aa10.94□□□□□ -0.66
HMGB3-204ENST00000448905 POU1F1P28069 291 aa10.94□□□□□ -0.66
HMGB3-204ENST00000448905 HMGA2P52926 109 aa10.94□□□□□ -0.66
HMGB3-204ENST00000448905 KRTAP10-3P60369 221 aa10.94□□□□□ -0.66
HMGB3-204ENST00000448905 FAM3AP98173 230 aa10.94□□□□□ -0.66
HMGB3-204ENST00000448905 IKZF1Q13422 519 aa10.94□□□□□ -0.66
HMGB3-204ENST00000448905 PCK2Q16822 640 aa10.94□□□□□ -0.66
HMGB3-204ENST00000448905 WDR38Q5JTN6 314 aa10.94□□□□□ -0.66
HMGB3-204ENST00000448905 ATPAF1Q5TC12 328 aaPredicted RBP10.94□□□□□ -0.66
HMGB3-204ENST00000448905 NCR3LG1Q68D85 454 aa10.94□□□□□ -0.66
HMGB3-204ENST00000448905 Q6ZSV7 163 aa10.94□□□□□ -0.66
HMGB3-204ENST00000448905 RASSF6Q6ZTQ3 369 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms