RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 SGK3Q96BR1 496 aa12.42□□□□□ -0.42
LIMS1-206ENST00000414829 LGALS12Q96DT0 336 aa12.42□□□□□ -0.42
LIMS1-206ENST00000414829 MEGF10Q96KG7 1140 aa12.42□□□□□ -0.42
LIMS1-206ENST00000414829 PAPOLGQ9BWT3 736 aaKnown RBP12.42□□□□□ -0.42
LIMS1-206ENST00000414829 TTTY10Q9BZA0 68 aa12.42□□□□□ -0.42
LIMS1-206ENST00000414829 NKX1-2Q9UD57 310 aaPredicted RBP12.42□□□□□ -0.42
LIMS1-206ENST00000414829 GNG8Q9UK08 70 aa12.42□□□□□ -0.42
LIMS1-206ENST00000414829 MPC1Q9Y5U8 109 aa12.42□□□□□ -0.42
LIMS1-206ENST00000414829 J3QRE1 110 aa12.41□□□□□ -0.42
LIMS1-206ENST00000414829 SMAD7O15105 426 aaKnown RBP12.41□□□□□ -0.42
LIMS1-206ENST00000414829 CDC14BO60729 498 aa12.41□□□□□ -0.42
LIMS1-206ENST00000414829 IGHA1P01876 353 aa12.41□□□□□ -0.42
LIMS1-206ENST00000414829 UBCP0CG48 685 aaKnown RBP12.41□□□□□ -0.42
LIMS1-206ENST00000414829 MYL12AP19105 171 aa12.41□□□□□ -0.42
LIMS1-206ENST00000414829 CA6P23280 308 aa12.41□□□□□ -0.42
LIMS1-206ENST00000414829 DCKP27707 260 aa12.41□□□□□ -0.42
LIMS1-206ENST00000414829 GATA4P43694 442 aa12.41□□□□□ -0.42
LIMS1-206ENST00000414829 GZMKP49863 264 aa12.41□□□□□ -0.42
LIMS1-206ENST00000414829 CSNK2BP67870 215 aa12.41□□□□□ -0.42
LIMS1-206ENST00000414829 GALEQ14376 348 aa12.41□□□□□ -0.42
LIMS1-206ENST00000414829 CDONQ4KMG0 1287 aa12.41□□□□□ -0.42
LIMS1-206ENST00000414829 ZNF684Q5T5D7 378 aa12.41□□□□□ -0.42
LIMS1-206ENST00000414829 THAP5Q7Z6K1 395 aa12.41□□□□□ -0.42
LIMS1-206ENST00000414829 ELMOD2Q8IZ81 293 aa12.41□□□□□ -0.42
LIMS1-206ENST00000414829 APH1BQ8WW43 257 aa12.41□□□□□ -0.42
LIMS1-206ENST00000414829 ITLN1Q8WWA0 313 aa12.41□□□□□ -0.42
LIMS1-206ENST00000414829 JAM3Q9BX67 310 aa12.41□□□□□ -0.42
LIMS1-206ENST00000414829 FN3KRPQ9HA64 309 aa12.41□□□□□ -0.42
LIMS1-206ENST00000414829 TMEM106BQ9NUM4 274 aa12.41□□□□□ -0.42
LIMS1-206ENST00000414829 CHCHD3Q9NX63 227 aaKnown RBP12.41□□□□□ -0.42
LIMS1-206ENST00000414829 OR52A1Q9UKL2 312 aa12.41□□□□□ -0.42
LIMS1-206ENST00000414829 ITPR3Q14573 2671 aa12.4□□□□□ -0.42
LIMS1-206ENST00000414829 A0A096LNT2 108 aa12.4□□□□□ -0.42
LIMS1-206ENST00000414829 ZNF816-ZNF321PA0A0X1KG74 233 aa12.4□□□□□ -0.42
LIMS1-206ENST00000414829 EFCAB10A6NFE3 127 aa12.4□□□□□ -0.42
LIMS1-206ENST00000414829 PRR32B1ATL7 298 aa12.4□□□□□ -0.42
LIMS1-206ENST00000414829 MLNRO43193 412 aa12.4□□□□□ -0.42
LIMS1-206ENST00000414829 WBP4O75554 376 aaKnown RBP12.4□□□□□ -0.42
LIMS1-206ENST00000414829 DHRS3O75911 302 aa12.4□□□□□ -0.42
LIMS1-206ENST00000414829 CST4P01036 141 aa12.4□□□□□ -0.42
LIMS1-206ENST00000414829 ISL1P61371 349 aa12.4□□□□□ -0.42
LIMS1-206ENST00000414829 ZNF85Q03923 595 aa12.4□□□□□ -0.42
LIMS1-206ENST00000414829 RIPPLY1Q0D2K3 151 aa12.4□□□□□ -0.42
LIMS1-206ENST00000414829 CLEC9AQ6UXN8 241 aa12.4□□□□□ -0.42
LIMS1-206ENST00000414829 DOK3Q7L591 496 aa12.4□□□□□ -0.42
LIMS1-206ENST00000414829 SSX6Q7RTT6 188 aa12.4□□□□□ -0.42
LIMS1-206ENST00000414829 LURAP1LQ8IV03 231 aa12.4□□□□□ -0.42
LIMS1-206ENST00000414829 CIARTQ8N365 385 aaPredicted RBP12.4□□□□□ -0.42
LIMS1-206ENST00000414829 SEMA6DQ8NFY4 1073 aa12.4□□□□□ -0.42
LIMS1-206ENST00000414829 TFAP2CQ92754 450 aa12.4□□□□□ -0.42
LIMS1-206ENST00000414829 YIPF5Q969M3 257 aa12.4□□□□□ -0.42
LIMS1-206ENST00000414829 RAB39BQ96DA2 213 aa12.4□□□□□ -0.42
LIMS1-206ENST00000414829 HIST1H2AAQ96QV6 131 aa12.4□□□□□ -0.42
LIMS1-206ENST00000414829 SIGLEC11Q96RL6 698 aa12.4□□□□□ -0.42
LIMS1-206ENST00000414829 MICU1Q9BPX6 476 aa12.4□□□□□ -0.42
LIMS1-206ENST00000414829 ALG8Q9BVK2 526 aa12.4□□□□□ -0.42
LIMS1-206ENST00000414829 RTL8AQ9BWD3 113 aa12.4□□□□□ -0.42
LIMS1-206ENST00000414829 PLEKHA1Q9HB21 404 aa12.4□□□□□ -0.42
LIMS1-206ENST00000414829 TRIM36Q9NQ86 728 aa12.4□□□□□ -0.42
LIMS1-206ENST00000414829 GPR84Q9NQS5 396 aa12.4□□□□□ -0.42
LIMS1-206ENST00000414829 CNOT2Q9NZN8 540 aaKnown RBP12.4□□□□□ -0.42
LIMS1-206ENST00000414829 A0A1B0GVI7 797 aa12.39□□□□□ -0.43
LIMS1-206ENST00000414829 F5H5P2 479 aa12.39□□□□□ -0.43
LIMS1-206ENST00000414829 FAM20BO75063 409 aa12.39□□□□□ -0.43
LIMS1-206ENST00000414829 SRSF10O75494 262 aaKnown RBP12.39□□□□□ -0.43
LIMS1-206ENST00000414829 RPP14O95059 124 aaKnown RBP12.39□□□□□ -0.43
LIMS1-206ENST00000414829 FSTL3O95633 263 aa12.39□□□□□ -0.43
LIMS1-206ENST00000414829 ATP6V1G2O95670 118 aa12.39□□□□□ -0.43
LIMS1-206ENST00000414829 PTBP3O95758 552 aaKnown RBP12.39□□□□□ -0.43
LIMS1-206ENST00000414829 CLIC3O95833 236 aa12.39□□□□□ -0.43
LIMS1-206ENST00000414829 TTRP02766 147 aa12.39□□□□□ -0.43
LIMS1-206ENST00000414829 PIPP12273 146 aaPredicted RBP12.39□□□□□ -0.43
LIMS1-206ENST00000414829 CPT2P23786 658 aa12.39□□□□□ -0.43
LIMS1-206ENST00000414829 COL8A2P25067 703 aa12.39□□□□□ -0.43
LIMS1-206ENST00000414829 MFGE8Q08431 387 aaPredicted RBP12.39□□□□□ -0.43
LIMS1-206ENST00000414829 TMEM249Q2WGJ8 235 aa12.39□□□□□ -0.43
LIMS1-206ENST00000414829 TMPRSS11AQ6ZMR5 421 aa12.39□□□□□ -0.43
LIMS1-206ENST00000414829 MUC20Q8N307 709 aaPredicted RBP12.39□□□□□ -0.43
LIMS1-206ENST00000414829 SPICQ8N5J4 248 aa12.39□□□□□ -0.43
LIMS1-206ENST00000414829 OR52I1Q8NGK6 324 aa12.39□□□□□ -0.43
LIMS1-206ENST00000414829 CNIH3Q8TBE1 160 aa12.39□□□□□ -0.43
LIMS1-206ENST00000414829 OR51E1Q8TCB6 317 aa12.39□□□□□ -0.43
LIMS1-206ENST00000414829 Q8TCH9 128 aa12.39□□□□□ -0.43
LIMS1-206ENST00000414829 C10orf35Q96D05 121 aa12.39□□□□□ -0.43
LIMS1-206ENST00000414829 GCM1Q9NP62 436 aa12.39□□□□□ -0.43
LIMS1-206ENST00000414829 FGF20Q9NP95 211 aaPredicted RBP12.39□□□□□ -0.43
LIMS1-206ENST00000414829 G6PC2Q9NQR9 355 aa12.39□□□□□ -0.43
LIMS1-206ENST00000414829 ACOXLQ9NUZ1 547 aa12.39□□□□□ -0.43
LIMS1-206ENST00000414829 ZNF319Q9P2F9 582 aa12.39□□□□□ -0.43
LIMS1-206ENST00000414829 ENPP5Q9UJA9 477 aa12.39□□□□□ -0.43
LIMS1-206ENST00000414829 EXOSC1Q9Y3B2 195 aaKnown RBP12.39□□□□□ -0.43
LIMS1-206ENST00000414829 RTTNQ86VV8 2226 aa12.39□□□□□ -0.43
LIMS1-206ENST00000414829 CELSR1Q9NYQ6 3014 aa12.39□□□□□ -0.43
LIMS1-206ENST00000414829 IGHV4-61A0A0C4DH41 118 aa12.38□□□□□ -0.43
LIMS1-206ENST00000414829 C5orf63A6NC05 138 aa12.38□□□□□ -0.43
LIMS1-206ENST00000414829 TMEM210A6NLX4 147 aa12.38□□□□□ -0.43
LIMS1-206ENST00000414829 LYNX1G3V0Z9 82 aa12.38□□□□□ -0.43
LIMS1-206ENST00000414829 LILRA1O75019 489 aa12.38□□□□□ -0.43
LIMS1-206ENST00000414829 IGLV3-1P01715 115 aa12.38□□□□□ -0.43
LIMS1-206ENST00000414829 HLA-DPB1P04440 258 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms