RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 RAB3DO95716 219 aa11.93□□□□□ -0.5
LIMS1-205ENST00000410093 GIPP09681 153 aaPredicted RBP11.93□□□□□ -0.5
LIMS1-205ENST00000410093 CBX5P45973 191 aa11.93□□□□□ -0.5
LIMS1-205ENST00000410093 SELENOPP49908 381 aa11.93□□□□□ -0.5
LIMS1-205ENST00000410093 RAP2BP61225 183 aa11.93□□□□□ -0.5
LIMS1-205ENST00000410093 MPPED2Q15777 294 aa11.93□□□□□ -0.5
LIMS1-205ENST00000410093 HYAL4Q2M3T9 481 aa11.93□□□□□ -0.5
LIMS1-205ENST00000410093 ZNF260Q3ZCT1 412 aa11.93□□□□□ -0.5
LIMS1-205ENST00000410093 ACTBL2Q562R1 376 aa11.93□□□□□ -0.5
LIMS1-205ENST00000410093 TMEM255AQ5JRV8 349 aa11.93□□□□□ -0.5
LIMS1-205ENST00000410093 ANGPTL5Q86XS5 388 aa11.93□□□□□ -0.5
LIMS1-205ENST00000410093 OR13C9Q8NGT0 318 aa11.93□□□□□ -0.5
LIMS1-205ENST00000410093 ZNF431Q8TF32 576 aaPredicted RBP11.93□□□□□ -0.5
LIMS1-205ENST00000410093 SSC4DQ8WTU2 575 aa11.93□□□□□ -0.5
LIMS1-205ENST00000410093 ZNF799Q96GE5 643 aa11.93□□□□□ -0.5
LIMS1-205ENST00000410093 TMEM38BQ9NVV0 291 aa11.93□□□□□ -0.5
LIMS1-205ENST00000410093 PLEK2Q9NYT0 353 aa11.93□□□□□ -0.5
LIMS1-205ENST00000410093 LHX6Q9UPM6 363 aa11.93□□□□□ -0.5
LIMS1-205ENST00000410093 PLEKHA6Q9Y2H5 1048 aa11.93□□□□□ -0.5
LIMS1-205ENST00000410093 MRPS28Q9Y2Q9 187 aaKnown RBP11.93□□□□□ -0.5
LIMS1-205ENST00000410093 KLF13Q9Y2Y9 288 aaPredicted RBP11.93□□□□□ -0.5
LIMS1-205ENST00000410093 FREM2Q5SZK8 3169 aa11.93□□□□□ -0.5
LIMS1-205ENST00000410093 NCOA6Q14686 2063 aaPredicted RBP11.92□□□□□ -0.5
LIMS1-205ENST00000410093 IGHV3-15A0A0B4J1V0 119 aa11.92□□□□□ -0.5
LIMS1-205ENST00000410093 LOC101059948A0A1B0GTJ6 334 aa11.92□□□□□ -0.5
LIMS1-205ENST00000410093 LMX1BO60663 402 aa11.92□□□□□ -0.5
LIMS1-205ENST00000410093 NEURL1O76050 574 aa11.92□□□□□ -0.5
LIMS1-205ENST00000410093 FARS2O95363 451 aaKnown RBP11.92□□□□□ -0.5
LIMS1-205ENST00000410093 ITGB2P05107 769 aa11.92□□□□□ -0.5
LIMS1-205ENST00000410093 HCKP08631 526 aa11.92□□□□□ -0.5
LIMS1-205ENST00000410093 GSTT2P0CG29 244 aa11.92□□□□□ -0.5
LIMS1-205ENST00000410093 VSIG8P0DPA2 414 aa11.92□□□□□ -0.5
LIMS1-205ENST00000410093 KLK2P20151 261 aa11.92□□□□□ -0.5
LIMS1-205ENST00000410093 PPA1Q15181 289 aa11.92□□□□□ -0.5
LIMS1-205ENST00000410093 PHYHD1Q5SRE7 291 aa11.92□□□□□ -0.5
LIMS1-205ENST00000410093 SLC36A1Q7Z2H8 476 aa11.92□□□□□ -0.5
LIMS1-205ENST00000410093 BIVMQ86UB2 503 aa11.92□□□□□ -0.5
LIMS1-205ENST00000410093 OR5AS1Q8N127 324 aa11.92□□□□□ -0.5
LIMS1-205ENST00000410093 OR56B1Q8NGI3 324 aa11.92□□□□□ -0.5
LIMS1-205ENST00000410093 OR10R2Q8NGX6 335 aa11.92□□□□□ -0.5
LIMS1-205ENST00000410093 SPSB1Q96BD6 273 aa11.92□□□□□ -0.5
LIMS1-205ENST00000410093 TECTBQ96PL2 329 aa11.92□□□□□ -0.5
LIMS1-205ENST00000410093 CHST5Q9GZS9 411 aa11.92□□□□□ -0.5
LIMS1-205ENST00000410093 ZNF703Q9H7S9 590 aaPredicted RBP11.92□□□□□ -0.5
LIMS1-205ENST00000410093 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.92□□□□□ -0.5
LIMS1-205ENST00000410093 DEPPQ9NTK1 212 aa11.92□□□□□ -0.5
LIMS1-205ENST00000410093 TIMM10BQ9Y5J6 103 aa11.92□□□□□ -0.5
LIMS1-205ENST00000410093 ACACAQ13085 2346 aa11.92□□□□□ -0.5
LIMS1-205ENST00000410093 KMT2BQ9UMN6 2715 aaPredicted RBP11.92□□□□□ -0.5
LIMS1-205ENST00000410093 A0A0G2JMM0 328 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 A0A1W2PPB8 328 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 A0A1W2PRS3 328 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 OR6C6A6NF89 314 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 KIR3DP1A8MWS1 328 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 KLRC4-KLRK1H3BQV0 150 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 SGCEO43556 437 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 CXCL13O43927 109 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 CA11O75493 328 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 OR2A4O95047 310 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 RFPL3SP0C7P2 107 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 CRYGSP22914 178 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 SLC6A9P48067 706 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 SOX8P57073 446 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 KRTAP27-1Q3LI81 207 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 WIPI1Q5MNZ9 446 aaPredicted RBP11.91□□□□□ -0.5
LIMS1-205ENST00000410093 TMEM53Q6P2H8 277 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 Q6ZTK2 550 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 ZNF101Q8IZC7 436 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 C9orf62Q8N4C0 152 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 PAQR4Q8N4S7 273 aaPredicted RBP11.91□□□□□ -0.5
LIMS1-205ENST00000410093 STEAP2Q8NFT2 490 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 FAM71F1Q96KD3 344 aaPredicted RBP11.91□□□□□ -0.5
LIMS1-205ENST00000410093 OR2A7Q96R45 310 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 TMPRSS13Q9BYE2 586 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 DLL4Q9NR61 685 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 HSPB11Q9Y547 144 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 NCKAP5O14513 1909 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 URB1O60287 2271 aaKnown RBP11.91□□□□□ -0.5
LIMS1-205ENST00000410093 F5H5K5 113 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 PYCARD-AS1I3L0S3 204 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 SYNGR3O43761 229 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 ZNF780AO75290 641 aaPredicted RBP11.91□□□□□ -0.5
LIMS1-205ENST00000410093 TNFSF15O95150 251 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 SYNGR4O95473 234 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 ACTL6AO96019 429 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 HPXP02790 462 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 CD3DP04234 171 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 PTHLHP12272 177 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 DNASE1P24855 282 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 RAD52P43351 418 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 RRADP55042 308 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 UNC119Q13432 240 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 OR1C1Q15619 314 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 CDNFQ49AH0 187 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 ZBTB37Q5TC79 503 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 FAHD2BQ6P2I3 314 aaPredicted RBP11.91□□□□□ -0.5
LIMS1-205ENST00000410093 GLIPR1L1Q6UWM5 242 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 ZNF100Q8IYN0 542 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 ZDHHC22Q8N966 263 aa11.91□□□□□ -0.5
LIMS1-205ENST00000410093 OR51S1Q8NGJ8 323 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms