RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 RER1O15258 196 aa18.57■□□□□ 0.56
CTCF-202ENST00000401394 TSPAN2O60636 221 aa18.57■□□□□ 0.56
CTCF-202ENST00000401394 RD3LP0DJH9 198 aa18.57■□□□□ 0.56
CTCF-202ENST00000401394 PJVKQ0ZLH3 352 aa18.57■□□□□ 0.56
CTCF-202ENST00000401394 HABP2Q14520 560 aaPredicted RBP18.57■□□□□ 0.56
CTCF-202ENST00000401394 FAM69BQ5VUD6 431 aa18.57■□□□□ 0.56
CTCF-202ENST00000401394 SEMA6DQ8NFY4 1073 aa18.57■□□□□ 0.56
CTCF-202ENST00000401394 OR13G1Q8NGZ3 307 aa18.57■□□□□ 0.56
CTCF-202ENST00000401394 HDHD3Q9BSH5 251 aaPredicted RBP18.57■□□□□ 0.56
CTCF-202ENST00000401394 RFNGQ9Y644 331 aa18.57■□□□□ 0.56
CTCF-202ENST00000401394 FER1L5A0AVI2 2057 aa18.57■□□□□ 0.56
CTCF-202ENST00000401394 CRTAPO75718 401 aaPredicted RBP18.57■□□□□ 0.56
CTCF-202ENST00000401394 C1QL1O75973 258 aa18.57■□□□□ 0.56
CTCF-202ENST00000401394 IFI6P09912 130 aa18.57■□□□□ 0.56
CTCF-202ENST00000401394 POLR2HP52434 150 aaKnown RBP18.57■□□□□ 0.56
CTCF-202ENST00000401394 ZNF704Q6ZNC4 412 aaPredicted RBP18.57■□□□□ 0.56
CTCF-202ENST00000401394 LMX1AQ8TE12 382 aa18.57■□□□□ 0.56
CTCF-202ENST00000401394 TCTN2Q96GX1 697 aa18.57■□□□□ 0.56
CTCF-202ENST00000401394 IP6K3Q96PC2 410 aa18.57■□□□□ 0.56
CTCF-202ENST00000401394 WWTR1Q9GZV5 400 aa18.57■□□□□ 0.56
CTCF-202ENST00000401394 IFT22Q9H7X7 185 aa18.57■□□□□ 0.56
CTCF-202ENST00000401394 ZNF304Q9HCX3 659 aa18.57■□□□□ 0.56
CTCF-202ENST00000401394 CUTCQ9NTM9 273 aa18.57■□□□□ 0.56
CTCF-202ENST00000401394 PMS2P1A4D2B8 440 aa18.57■□□□□ 0.56
CTCF-202ENST00000401394 MEGF11A6BM72 1044 aa18.57■□□□□ 0.56
CTCF-202ENST00000401394 COLCA2A8K830 154 aa18.57■□□□□ 0.56
CTCF-202ENST00000401394 ALG1L2C9J202 215 aa18.57■□□□□ 0.56
CTCF-202ENST00000401394 FTCDNL1E5RQL4 147 aa18.57■□□□□ 0.56
CTCF-202ENST00000401394 DHRS11Q6UWP2 260 aa18.57■□□□□ 0.56
CTCF-202ENST00000401394 ASB10Q8WXI3 467 aa18.57■□□□□ 0.56
CTCF-202ENST00000401394 RAB3CQ96E17 227 aa18.57■□□□□ 0.56
CTCF-202ENST00000401394 SUSD2Q9UGT4 822 aa18.57■□□□□ 0.56
CTCF-202ENST00000401394 GPR132Q9UNW8 380 aa18.57■□□□□ 0.56
CTCF-202ENST00000401394 RAMP1O60894 148 aa18.56■□□□□ 0.56
CTCF-202ENST00000401394 CAPZBP47756 277 aa18.56■□□□□ 0.56
CTCF-202ENST00000401394 YPEL5P62699 121 aa18.56■□□□□ 0.56
CTCF-202ENST00000401394 SLC25A43Q8WUT9 341 aaPredicted RBP18.56■□□□□ 0.56
CTCF-202ENST00000401394 NECAB3Q96P71 396 aaPredicted RBP18.56■□□□□ 0.56
CTCF-202ENST00000401394 ATPIF1Q9UII2 106 aa18.56■□□□□ 0.56
CTCF-202ENST00000401394 MRPS28Q9Y2Q9 187 aaKnown RBP18.56■□□□□ 0.56
CTCF-202ENST00000401394 CARHSP1Q9Y2V2 147 aaKnown RBP18.56■□□□□ 0.56
CTCF-202ENST00000401394 MUC3AQ02505 3323 aa18.56■□□□□ 0.56
CTCF-202ENST00000401394 LRP4O75096 1905 aa18.56■□□□□ 0.56
CTCF-202ENST00000401394 RNASEK-C17orf49H0YIS7 233 aa18.56■□□□□ 0.56
CTCF-202ENST00000401394 POU2F2P09086 479 aa18.56■□□□□ 0.56
CTCF-202ENST00000401394 ARFRP1Q13795 201 aa18.56■□□□□ 0.56
CTCF-202ENST00000401394 TOMM20Q15388 145 aa18.56■□□□□ 0.56
CTCF-202ENST00000401394 SWI5Q1ZZU3 235 aa18.56■□□□□ 0.56
CTCF-202ENST00000401394 TMEM128Q5BJH2 165 aa18.56■□□□□ 0.56
CTCF-202ENST00000401394 AVPI1Q5T686 147 aa18.56■□□□□ 0.56
CTCF-202ENST00000401394 SLC22A24Q8N4F4 322 aa18.56■□□□□ 0.56
CTCF-202ENST00000401394 STOML3Q8TAV4 291 aa18.56■□□□□ 0.56
CTCF-202ENST00000401394 C1orf147Q96MC9 270 aaPredicted RBP18.56■□□□□ 0.56
CTCF-202ENST00000401394 BIN3Q9NQY0 253 aa18.56■□□□□ 0.56
CTCF-202ENST00000401394 MMP26Q9NRE1 261 aa18.56■□□□□ 0.56
CTCF-202ENST00000401394 AMDHD2Q9Y303 409 aa18.56■□□□□ 0.56
CTCF-202ENST00000401394 FLVCR1Q9Y5Y0 555 aa18.56■□□□□ 0.56
CTCF-202ENST00000401394 TRBV23-1A0A0A0MS06 115 aa18.55■□□□□ 0.56
CTCF-202ENST00000401394 EFNA2O43921 213 aa18.55■□□□□ 0.56
CTCF-202ENST00000401394 CD37P11049 281 aa18.55■□□□□ 0.56
CTCF-202ENST00000401394 ZNF17P17021 662 aa18.55■□□□□ 0.56
CTCF-202ENST00000401394 CRABP1P29762 137 aa18.55■□□□□ 0.56
CTCF-202ENST00000401394 RABIFP47224 123 aa18.55■□□□□ 0.56
CTCF-202ENST00000401394 ASCL1P50553 236 aa18.55■□□□□ 0.56
CTCF-202ENST00000401394 TLE3Q04726 772 aa18.55■□□□□ 0.56
CTCF-202ENST00000401394 TMEM244Q5VVB8 128 aa18.55■□□□□ 0.56
CTCF-202ENST00000401394 ASB13Q8WXK3 278 aa18.55■□□□□ 0.56
CTCF-202ENST00000401394 SPSB2Q99619 263 aa18.55■□□□□ 0.56
CTCF-202ENST00000401394 NCOA6Q14686 2063 aaPredicted RBP18.55■□□□□ 0.56
CTCF-202ENST00000401394 CPAMD8Q8IZJ3 1885 aa18.55■□□□□ 0.56
CTCF-202ENST00000401394 TTLL8A6PVC2 850 aa18.55■□□□□ 0.56
CTCF-202ENST00000401394 ZNF814B7Z6K7 855 aa18.55■□□□□ 0.56
CTCF-202ENST00000401394 SNAPINO95295 136 aa18.55■□□□□ 0.56
CTCF-202ENST00000401394 C10orf91Q5T1B1 145 aa18.55■□□□□ 0.56
CTCF-202ENST00000401394 AADACL3Q5VUY0 350 aa18.55■□□□□ 0.56
CTCF-202ENST00000401394 OR5AS1Q8N127 324 aa18.55■□□□□ 0.56
CTCF-202ENST00000401394 GPER1Q99527 375 aa18.55■□□□□ 0.56
CTCF-202ENST00000401394 GPR84Q9NQS5 396 aa18.55■□□□□ 0.56
CTCF-202ENST00000401394 ADAM10O14672 748 aa18.54■□□□□ 0.56
CTCF-202ENST00000401394 SCGB1D2O95969 90 aa18.54■□□□□ 0.56
CTCF-202ENST00000401394 ISG15P05161 165 aa18.54■□□□□ 0.56
CTCF-202ENST00000401394 HCKP08631 526 aa18.54■□□□□ 0.56
CTCF-202ENST00000401394 HSF1Q00613 529 aa18.54■□□□□ 0.56
CTCF-202ENST00000401394 PEA15Q15121 130 aa18.54■□□□□ 0.56
CTCF-202ENST00000401394 PHF19Q5T6S3 580 aa18.54■□□□□ 0.56
CTCF-202ENST00000401394 RNF133Q8WVZ7 376 aa18.54■□□□□ 0.56
CTCF-202ENST00000401394 KCNK17Q96T54 332 aa18.54■□□□□ 0.56
CTCF-202ENST00000401394 SLC5A7Q9GZV3 580 aa18.54■□□□□ 0.56
CTCF-202ENST00000401394 POLR1DQ9Y2S0 133 aa18.54■□□□□ 0.56
CTCF-202ENST00000401394 A0A1W2PNR3 127 aa18.54■□□□□ 0.56
CTCF-202ENST00000401394 TMEM14DPA8MWL7 114 aa18.54■□□□□ 0.56
CTCF-202ENST00000401394 SLC6A8P48029 635 aa18.54■□□□□ 0.56
CTCF-202ENST00000401394 P2RY4P51582 365 aa18.54■□□□□ 0.56
CTCF-202ENST00000401394 ZNF248Q8NDW4 579 aa18.54■□□□□ 0.56
CTCF-202ENST00000401394 ASH2LQ9UBL3 628 aa18.54■□□□□ 0.56
CTCF-202ENST00000401394 ATG2AQ2TAZ0 1938 aa18.54■□□□□ 0.56
CTCF-202ENST00000401394 MT-ATP6P00846 226 aa18.54■□□□□ 0.56
CTCF-202ENST00000401394 CPT2P23786 658 aa18.54■□□□□ 0.56
CTCF-202ENST00000401394 SP6Q3SY56 376 aa18.54■□□□□ 0.56
CTCF-202ENST00000401394 BRICD5Q6PL45 260 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms