RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 ADH4P08319 380 aa10.73□□□□□ -0.69
SYNPO-202ENST00000394243 DMRTC1Q5HYR2 192 aa10.73□□□□□ -0.69
SYNPO-202ENST00000394243 SH2D5Q6ZV89 423 aa10.73□□□□□ -0.69
SYNPO-202ENST00000394243 TOX3O15405 576 aaPredicted RBP10.73□□□□□ -0.69
SYNPO-202ENST00000394243 ZNF737O75373 536 aa10.73□□□□□ -0.69
SYNPO-202ENST00000394243 DUSP8Q13202 625 aa10.73□□□□□ -0.69
SYNPO-202ENST00000394243 RAB32Q13637 225 aa10.73□□□□□ -0.69
SYNPO-202ENST00000394243 FFAR4Q5NUL3 377 aa10.73□□□□□ -0.69
SYNPO-202ENST00000394243 ELFN2Q5R3F8 820 aa10.73□□□□□ -0.69
SYNPO-202ENST00000394243 LAIR1Q6GTX8 287 aa10.73□□□□□ -0.69
SYNPO-202ENST00000394243 ARIH2OSQ8N7S6 290 aa10.73□□□□□ -0.69
SYNPO-202ENST00000394243 MUCL1Q96DR8 90 aa10.73□□□□□ -0.69
SYNPO-202ENST00000394243 NRSN2Q9GZP1 204 aa10.73□□□□□ -0.69
SYNPO-202ENST00000394243 PBOV1Q9GZY1 135 aa10.73□□□□□ -0.69
SYNPO-202ENST00000394243 RNF24Q9Y225 148 aa10.73□□□□□ -0.69
SYNPO-202ENST00000394243 SIRPB1O00241 398 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 GPR37O15354 613 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 HEXAP06865 529 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 BPIFB3P59826 476 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 HLA-DRB3P79483 266 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 PAX5Q02548 391 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 RPL18Q07020 188 aaKnown RBP10.72□□□□□ -0.69
SYNPO-202ENST00000394243 DMWDQ09019 674 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 ELAVL1Q15717 326 aaKnown RBP10.72□□□□□ -0.69
SYNPO-202ENST00000394243 MPPED2Q15777 294 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 WDR74Q6RFH5 385 aaPredicted RBP10.72□□□□□ -0.69
SYNPO-202ENST00000394243 SPNS2Q8IVW8 549 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 TP53I13Q8NBR0 393 aaPredicted RBP10.72□□□□□ -0.69
SYNPO-202ENST00000394243 SEC11CQ9BY50 192 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 ZBTB32Q9Y2Y4 487 aaPredicted RBP10.72□□□□□ -0.69
SYNPO-202ENST00000394243 IL3RAP26951 378 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 THEM4Q5T1C6 240 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 FBXO17Q96EF6 278 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 FKBP11Q9NYL4 201 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 PAM16Q9Y3D7 125 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 PARP4Q9UKK3 1724 aaKnown RBP10.72□□□□□ -0.69
SYNPO-202ENST00000394243 MASP2O00187 686 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 CXCL3P19876 107 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 CD96P40200 585 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 SSX1Q16384 188 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 SPAG17Q6Q759 2223 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 TMEM202A6NGA9 273 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 GEMIN2O14893 280 aaKnown RBP10.72□□□□□ -0.69
SYNPO-202ENST00000394243 COX7A2P2O60397 106 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 ZNF217O75362 1048 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 NRASP01111 189 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 DPPA3Q6W0C5 159 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 TAS1R1Q7RTX1 841 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 DUSP18Q8NEJ0 188 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 OBP2AQ9NY56 170 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 C4AP0C0L4 1744 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 C4BP0C0L5 1744 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 A0A1W2PR48 441 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 YIF1AO95070 293 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 IGHV3-9P01782 118 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 OPN1MWP04001 364 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 OPN1MW2P0DN77 364 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 OPN1MW3P0DN78 364 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 PCP4P48539 62 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 RPS16P62249 146 aaKnown RBP10.72□□□□□ -0.69
SYNPO-202ENST00000394243 C19orf57Q0VDD7 668 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 NKG7Q16617 165 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 TRILQ7L0X0 811 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 GOT1L1Q8NHS2 421 aaPredicted RBP10.72□□□□□ -0.69
SYNPO-202ENST00000394243 TMEM174Q8WUU8 243 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 LANCL2Q9NS86 450 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 ASCC3Q8N3C0 2202 aaKnown RBP10.72□□□□□ -0.69
SYNPO-202ENST00000394243 PRRC2BQ5JSZ5 2229 aaKnown RBP10.72□□□□□ -0.69
SYNPO-202ENST00000394243 NUP214P35658 2090 aaPredicted RBP10.72□□□□□ -0.69
SYNPO-202ENST00000394243 TNFRSF10CO14798 259 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 BCAT2O15382 392 aaPredicted RBP10.72□□□□□ -0.69
SYNPO-202ENST00000394243 FAM3AP98173 230 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 ZNF816Q0VGE8 651 aaPredicted RBP10.72□□□□□ -0.69
SYNPO-202ENST00000394243 AGERQ15109 404 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.72□□□□□ -0.69
SYNPO-202ENST00000394243 MYPOPQ86VE0 399 aaPredicted RBP10.72□□□□□ -0.69
SYNPO-202ENST00000394243 STPG2Q8N412 459 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 SIRT5Q9NXA8 310 aa10.72□□□□□ -0.69
SYNPO-202ENST00000394243 IGHV3-64DA0A0J9YX35 117 aa10.71□□□□□ -0.69
SYNPO-202ENST00000394243 C4orf47A7E2U8 309 aa10.71□□□□□ -0.69
SYNPO-202ENST00000394243 M0R2Z0 102 aa10.71□□□□□ -0.69
SYNPO-202ENST00000394243 SLC17A2O00624 439 aa10.71□□□□□ -0.69
SYNPO-202ENST00000394243 DSCR3O14972 297 aa10.71□□□□□ -0.69
SYNPO-202ENST00000394243 FCMRO60667 390 aa10.71□□□□□ -0.69
SYNPO-202ENST00000394243 GLRA1P23415 457 aa10.71□□□□□ -0.69
SYNPO-202ENST00000394243 FPR2P25090 351 aa10.71□□□□□ -0.69
SYNPO-202ENST00000394243 OR10J1P30954 320 aa10.71□□□□□ -0.69
SYNPO-202ENST00000394243 FGF8P55075 233 aaPredicted RBP10.71□□□□□ -0.69
SYNPO-202ENST00000394243 LGALSLQ3ZCW2 172 aaPredicted RBP10.71□□□□□ -0.69
SYNPO-202ENST00000394243 OR5C1Q8NGR4 320 aa10.71□□□□□ -0.69
SYNPO-202ENST00000394243 SLC46A2Q9BY10 475 aa10.71□□□□□ -0.69
SYNPO-202ENST00000394243 RBFOX3A6NFN3 312 aa10.71□□□□□ -0.69
SYNPO-202ENST00000394243 IGF2P01344 180 aa10.71□□□□□ -0.69
SYNPO-202ENST00000394243 FGF9P31371 208 aaPredicted RBP10.71□□□□□ -0.69
SYNPO-202ENST00000394243 ERHP84090 104 aaKnown RBP10.71□□□□□ -0.69
SYNPO-202ENST00000394243 RPEL1Q2QD12 228 aa10.71□□□□□ -0.69
SYNPO-202ENST00000394243 ACSM6Q6P461 480 aa10.71□□□□□ -0.69
SYNPO-202ENST00000394243 ATP5SQ99766 215 aa10.71□□□□□ -0.69
SYNPO-202ENST00000394243 ZNF426Q9BUY5 554 aa10.71□□□□□ -0.69
SYNPO-202ENST00000394243 IL21Q9HBE4 155 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms