RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 LCN10Q6JVE6 187 aa9.91□□□□□ -0.82
CUX1-204ENST00000393824 ZNF585AQ6P3V2 769 aa9.91□□□□□ -0.82
CUX1-204ENST00000393824 ZNF676Q8N7Q3 588 aa9.91□□□□□ -0.82
CUX1-204ENST00000393824 DEFB124Q8NES8 71 aa9.91□□□□□ -0.82
CUX1-204ENST00000393824 OR10AC1Q8NH08 325 aa9.91□□□□□ -0.82
CUX1-204ENST00000393824 LYPD6BQ8NI32 183 aa9.91□□□□□ -0.82
CUX1-204ENST00000393824 MRGPRFQ96AM1 343 aa9.91□□□□□ -0.82
CUX1-204ENST00000393824 AKR1E2Q96JD6 320 aa9.91□□□□□ -0.82
CUX1-204ENST00000393824 MEGF10Q96KG7 1140 aa9.91□□□□□ -0.82
CUX1-204ENST00000393824 ADAD1Q96M93 576 aaKnown RBP9.91□□□□□ -0.82
CUX1-204ENST00000393824 AQP10Q96PS8 301 aa9.91□□□□□ -0.82
CUX1-204ENST00000393824 PARP11Q9NR21 331 aa9.91□□□□□ -0.82
CUX1-204ENST00000393824 DNAJB12Q9NXW2 375 aaKnown RBP9.91□□□□□ -0.82
CUX1-204ENST00000393824 FARSAQ9Y285 508 aaKnown RBP9.91□□□□□ -0.82
CUX1-204ENST00000393824 SPACA6W5XKT8 324 aa9.91□□□□□ -0.82
CUX1-204ENST00000393824 SPENQ96T58 3664 aaKnown RBP9.91□□□□□ -0.82
CUX1-204ENST00000393824 NPIPA5A0A0B4J1W7 369 aa9.91□□□□□ -0.82
CUX1-204ENST00000393824 NPIPA7E9PJI5 369 aa9.91□□□□□ -0.82
CUX1-204ENST00000393824 TOX3O15405 576 aaPredicted RBP9.91□□□□□ -0.82
CUX1-204ENST00000393824 GPR75O95800 540 aa9.91□□□□□ -0.82
CUX1-204ENST00000393824 NPIPA8P0DM63 369 aa9.91□□□□□ -0.82
CUX1-204ENST00000393824 CD37P11049 281 aa9.91□□□□□ -0.82
CUX1-204ENST00000393824 LIPCP11150 499 aa9.91□□□□□ -0.82
CUX1-204ENST00000393824 GABRA3P34903 492 aa9.91□□□□□ -0.82
CUX1-204ENST00000393824 AKR1C3P42330 323 aa9.91□□□□□ -0.82
CUX1-204ENST00000393824 GSK3AP49840 483 aa9.91□□□□□ -0.82
CUX1-204ENST00000393824 SULT1A2P50226 295 aa9.91□□□□□ -0.82
CUX1-204ENST00000393824 ADAM8P78325 824 aa9.91□□□□□ -0.82
CUX1-204ENST00000393824 PPA1Q15181 289 aa9.91□□□□□ -0.82
CUX1-204ENST00000393824 LBHQ53QV2 105 aaPredicted RBP9.91□□□□□ -0.82
CUX1-204ENST00000393824 KRBOX4Q5JUW0 171 aa9.91□□□□□ -0.82
CUX1-204ENST00000393824 CYB5R2Q6BCY4 276 aa9.91□□□□□ -0.82
CUX1-204ENST00000393824 PAPD4Q6PIY7 484 aaKnown RBP9.91□□□□□ -0.82
CUX1-204ENST00000393824 DPPA2Q7Z7J5 298 aa9.91□□□□□ -0.82
CUX1-204ENST00000393824 PIP4P1Q86T03 277 aa9.91□□□□□ -0.82
CUX1-204ENST00000393824 CARFQ8N187 725 aa9.91□□□□□ -0.82
CUX1-204ENST00000393824 ZNF511Q8NB15 262 aa9.91□□□□□ -0.82
CUX1-204ENST00000393824 OR51A4Q8NGJ6 313 aa9.91□□□□□ -0.82
CUX1-204ENST00000393824 CA5BP1Q8WTZ4 195 aa9.91□□□□□ -0.82
CUX1-204ENST00000393824 KCNK15Q9H427 330 aa9.91□□□□□ -0.82
CUX1-204ENST00000393824 KCNG2Q9UJ96 466 aa9.91□□□□□ -0.82
CUX1-204ENST00000393824 MRPS33Q9Y291 106 aaKnown RBP9.91□□□□□ -0.82
CUX1-204ENST00000393824 KLHDC2Q9Y2U9 406 aa9.91□□□□□ -0.82
CUX1-204ENST00000393824 TMED7Q9Y3B3 224 aa9.91□□□□□ -0.82
CUX1-204ENST00000393824 CEP295Q9C0D2 2601 aa9.91□□□□□ -0.82
CUX1-204ENST00000393824 A0A1B0GTH9 108 aa9.9□□□□□ -0.82
CUX1-204ENST00000393824 SPAARA0A1B0GVQ0 90 aa9.9□□□□□ -0.82
CUX1-204ENST00000393824 A0A1W2PPH5 198 aa9.9□□□□□ -0.82
CUX1-204ENST00000393824 C5orf51A6NDU8 294 aa9.9□□□□□ -0.82
CUX1-204ENST00000393824 DLL1O00548 723 aa9.9□□□□□ -0.82
CUX1-204ENST00000393824 NSA2O95478 260 aaKnown RBP9.9□□□□□ -0.82
CUX1-204ENST00000393824 ERCC1P07992 297 aaPredicted RBP9.9□□□□□ -0.82
CUX1-204ENST00000393824 RPL4P36578 427 aaKnown RBP9.9□□□□□ -0.82
CUX1-204ENST00000393824 SERPINF1P36955 418 aa9.9□□□□□ -0.82
CUX1-204ENST00000393824 CDX1P47902 265 aaPredicted RBP9.9□□□□□ -0.82
CUX1-204ENST00000393824 RPS4XP62701 263 aaKnown RBP9.9□□□□□ -0.82
CUX1-204ENST00000393824 RASGEF1BQ0VAM2 473 aa9.9□□□□□ -0.82
CUX1-204ENST00000393824 MGAT2Q10469 447 aa9.9□□□□□ -0.82
CUX1-204ENST00000393824 FAM53BQ14153 422 aa9.9□□□□□ -0.82
CUX1-204ENST00000393824 PRICKLE4Q2TBC4 344 aa9.9□□□□□ -0.82
CUX1-204ENST00000393824 AWAT1Q58HT5 328 aa9.9□□□□□ -0.82
CUX1-204ENST00000393824 ADAM5Q6NVV9 412 aa9.9□□□□□ -0.82
CUX1-204ENST00000393824 SHISA6Q6ZSJ9 500 aa9.9□□□□□ -0.82
CUX1-204ENST00000393824 KMT5CQ86Y97 462 aa9.9□□□□□ -0.82
CUX1-204ENST00000393824 PRSS58Q8IYP2 241 aa9.9□□□□□ -0.82
CUX1-204ENST00000393824 OR10H5Q8NGA6 315 aa9.9□□□□□ -0.82
CUX1-204ENST00000393824 CTHRC1Q96CG8 243 aa9.9□□□□□ -0.82
CUX1-204ENST00000393824 RHOVQ96L33 236 aa9.9□□□□□ -0.82
CUX1-204ENST00000393824 C2orf88Q9BSF0 95 aa9.9□□□□□ -0.82
CUX1-204ENST00000393824 A0A087WUJ7 227 aa9.9□□□□□ -0.82
CUX1-204ENST00000393824 hCG_1809904A0A1W2PP81 198 aa9.9□□□□□ -0.82
CUX1-204ENST00000393824 A0A1W2PR64 198 aa9.9□□□□□ -0.82
CUX1-204ENST00000393824 A0A1W2PRV1 198 aa9.9□□□□□ -0.82
CUX1-204ENST00000393824 MSGN1A6NI15 193 aa9.9□□□□□ -0.82
CUX1-204ENST00000393824 OIP5O43482 229 aa9.9□□□□□ -0.82
CUX1-204ENST00000393824 IFNA17P01571 189 aa9.9□□□□□ -0.82
CUX1-204ENST00000393824 SKP1P63208 163 aa9.9□□□□□ -0.82
CUX1-204ENST00000393824 AKIRIN2Q53H80 203 aa9.9□□□□□ -0.82
CUX1-204ENST00000393824 RNASE10Q5GAN6 216 aaKnown RBP9.9□□□□□ -0.82
CUX1-204ENST00000393824 NCMAPQ5T1S8 102 aa9.9□□□□□ -0.82
CUX1-204ENST00000393824 PRSS54Q6PEW0 395 aa9.9□□□□□ -0.82
CUX1-204ENST00000393824 KCTD9Q7L273 389 aa9.9□□□□□ -0.82
CUX1-204ENST00000393824 ZNF627Q7L945 461 aa9.9□□□□□ -0.82
CUX1-204ENST00000393824 CDC20BQ86Y33 519 aa9.9□□□□□ -0.82
CUX1-204ENST00000393824 EXD3Q8N9H8 876 aa9.9□□□□□ -0.82
CUX1-204ENST00000393824 ISOC2Q96AB3 205 aa9.9□□□□□ -0.82
CUX1-204ENST00000393824 ANKRD9Q96BM1 317 aaPredicted RBP9.9□□□□□ -0.82
CUX1-204ENST00000393824 IP6K3Q96PC2 410 aa9.9□□□□□ -0.82
CUX1-204ENST00000393824 CHST5Q9GZS9 411 aa9.9□□□□□ -0.82
CUX1-204ENST00000393824 SYT4Q9H2B2 425 aa9.9□□□□□ -0.82
CUX1-204ENST00000393824 KLK13Q9UKR3 277 aa9.9□□□□□ -0.82
CUX1-204ENST00000393824 HRKO00198 91 aa9.89□□□□□ -0.83
CUX1-204ENST00000393824 TAAR5O14804 337 aa9.89□□□□□ -0.83
CUX1-204ENST00000393824 MED6O75586 246 aa9.89□□□□□ -0.83
CUX1-204ENST00000393824 SNRNP70P08621 437 aaKnown RBP9.89□□□□□ -0.83
CUX1-204ENST00000393824 SLC2A1P11166 492 aa9.89□□□□□ -0.83
CUX1-204ENST00000393824 NME2P22392 152 aa9.89□□□□□ -0.83
CUX1-204ENST00000393824 TGIF1Q15583 401 aa9.89□□□□□ -0.83
CUX1-204ENST00000393824 TRIP6Q15654 476 aaKnown RBP9.89□□□□□ -0.83
CUX1-204ENST00000393824 ZNF141Q15928 474 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms