RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 FAM169BQ8N8A8 192 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 DCAF4L2Q8NA75 395 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 OR11H7Q8NGC8 314 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 OR4K5Q8NGD3 323 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 CNIH3Q8TBE1 160 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 ACMSDQ8TDX5 336 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 RTN4IP1Q8WWV3 396 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-202ENST00000375405 MARVELD3Q96A59 401 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 EXOSC3Q9NQT5 275 aaKnown RBP4.23□□□□□ -1.73
SCN1A-202ENST00000375405 RASL12Q9NYN1 266 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 NCOA3Q9Y6Q9 1424 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 LEFTY2O00292 366 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 ACTL6AO96019 429 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 CD3DP04234 171 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 DUSP1P28562 367 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 CEACAM3P40198 252 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 CLDN8P56748 225 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 SERINC5Q86VE9 423 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 OR52M1Q8NGK5 317 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 OR5W2Q8NH69 310 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 ITLN2Q8WWU7 325 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-202ENST00000375405 TMBIM1Q969X1 311 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 NPAS1Q99742 590 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 RHNO1Q9BSD3 238 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 ZNF768Q9H5H4 540 aaKnown RBP4.23□□□□□ -1.73
SCN1A-202ENST00000375405 PLA2R1Q13018 1463 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP4.23□□□□□ -1.73
SCN1A-202ENST00000375405 IDSB3KWA1 339 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 WNT7AO00755 349 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 CTDSP2O14595 271 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 RAF1P04049 648 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 ZNF865P0CJ78 1059 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-202ENST00000375405 GALNSP34059 522 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 ZNF137PP52743 207 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 FKBP1BP68106 108 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 ZNF239Q16600 458 aaKnown RBP4.23□□□□□ -1.73
SCN1A-202ENST00000375405 C21orf62-AS1Q17RA5 79 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 C19orf48Q6RUI8 117 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 C6orf15Q6UXA7 325 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-202ENST00000375405 CYHR1Q6ZMK1 362 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 PNPLA5Q7Z6Z6 429 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-202ENST00000375405 PACRGLQ8N7B6 248 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 ZNF383Q8NA42 475 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 KCNG3Q8TAE7 436 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 DDOQ99489 341 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 MVB12BQ9H7P6 319 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 SAP30LQ9HAJ7 183 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 PAQR5Q9NXK6 330 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-202ENST00000375405 IL36GQ9NZH8 169 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 OR52A1Q9UKL2 312 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 RNF11Q9Y3C5 154 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 STRAPQ9Y3F4 350 aaKnown RBP4.23□□□□□ -1.73
SCN1A-202ENST00000375405 CEP290O15078 2479 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 OVOS2A0A0J9YW53 1432 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 OVOS2Q6IE36 1432 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 CEMIPQ8WUJ3 1361 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 A0A1W2PR48 441 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 CHKB-CPT1BH3BT56 60 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 CRYABP02511 175 aaKnown RBP4.23□□□□□ -1.73
SCN1A-202ENST00000375405 SOD3P08294 240 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 FURINP09958 794 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 HIST1H1EP10412 219 aaKnown RBP4.23□□□□□ -1.73
SCN1A-202ENST00000375405 HTR1FP30939 366 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 CXCR4P61073 352 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 IL10RBQ08334 325 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 C17orf67Q0P5P2 114 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 MGAT2Q10469 447 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 MFAP5Q13361 173 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 COTL1Q14019 142 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 PCBP1Q15365 356 aaKnown RBP eCLIP4.23□□□□□ -1.73
SCN1A-202ENST00000375405 ZNF56Q15929 161 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 TNXAQ16473 311 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 ZNF766Q5HY98 468 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 LSRQ86X29 649 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-202ENST00000375405 LGI3Q8N145 548 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 DRAXINQ8NBI3 349 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-202ENST00000375405 SVIPQ8NHG7 77 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 SCAMP5Q8TAC9 235 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 MCHR2Q969V1 340 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 APIPQ96GX9 242 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 TMEM56Q96MV1 263 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 WNT10AQ9GZT5 417 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 NSUN3Q9H649 340 aaKnown RBP4.23□□□□□ -1.73
SCN1A-202ENST00000375405 NTMQ9P121 344 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 LOXL2Q9Y4K0 774 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 GPR45Q9Y5Y3 372 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 NOTCH3Q9UM47 2321 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 CCDC187A0A096LP49 1063 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 RFPL4AA6NLU0 287 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 RFPL4AL1F8VTS6 287 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 ARG1P05089 322 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 NPPBP16860 134 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 PRLHRP49683 370 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 EEF1AKMT2Q5JPI9 291 aaKnown RBP4.22□□□□□ -1.73
SCN1A-202ENST00000375405 ANKRD33Q7Z3H0 272 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 LRP11Q86VZ4 500 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 ASB13Q8WXK3 278 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 SLC17A9Q9BYT1 436 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 PLA2G12AQ9BZM1 189 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 DUSP21Q9H596 190 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms