RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 H2BFMP0C1H6 154 aa12.18□□□□□ -0.46
USP49-201ENST00000373006 HNRNPA2B1P22626 353 aaKnown RBP12.18□□□□□ -0.46
USP49-201ENST00000373006 HSD17B7P56937 341 aa12.18□□□□□ -0.46
USP49-201ENST00000373006 PRSS54Q6PEW0 395 aa12.18□□□□□ -0.46
USP49-201ENST00000373006 SECTM1Q8WVN6 248 aa12.18□□□□□ -0.46
USP49-201ENST00000373006 PTX4Q96A99 478 aa12.18□□□□□ -0.46
USP49-201ENST00000373006 NECAB3Q96P71 396 aaPredicted RBP12.18□□□□□ -0.46
USP49-201ENST00000373006 SEC61A2Q9H9S3 476 aa12.18□□□□□ -0.46
USP49-201ENST00000373006 VSX1Q9NZR4 365 aaPredicted RBP12.18□□□□□ -0.46
USP49-201ENST00000373006 MED12Q93074 2177 aa12.18□□□□□ -0.46
USP49-201ENST00000373006 NUDT19A8MXV4 375 aa12.17□□□□□ -0.46
USP49-201ENST00000373006 NR2C1P13056 603 aa12.17□□□□□ -0.46
USP49-201ENST00000373006 CLDN6P56747 220 aa12.17□□□□□ -0.46
USP49-201ENST00000373006 QRFPP83859 136 aa12.17□□□□□ -0.46
USP49-201ENST00000373006 SSX2Q16385 188 aa12.17□□□□□ -0.46
USP49-201ENST00000373006 PRTGQ2VWP7 1150 aa12.17□□□□□ -0.46
USP49-201ENST00000373006 SKA3Q8IX90 412 aa12.17□□□□□ -0.46
USP49-201ENST00000373006 NKAIN3Q8N8D7 197 aa12.17□□□□□ -0.46
USP49-201ENST00000373006 ZNF383Q8NA42 475 aa12.17□□□□□ -0.46
USP49-201ENST00000373006 ST7LQ8TDW4 575 aa12.17□□□□□ -0.46
USP49-201ENST00000373006 MAFIPQ8WZ33 124 aa12.17□□□□□ -0.46
USP49-201ENST00000373006 SSX3Q99909 188 aa12.17□□□□□ -0.46
USP49-201ENST00000373006 SMIM3Q9BZL3 60 aa12.17□□□□□ -0.46
USP49-201ENST00000373006 SYT7O43581 403 aa12.17□□□□□ -0.46
USP49-201ENST00000373006 MPIG6BO95866 241 aa12.17□□□□□ -0.46
USP49-201ENST00000373006 IGHV2-70P01814 119 aa12.17□□□□□ -0.46
USP49-201ENST00000373006 GLRA1P23415 457 aa12.17□□□□□ -0.46
USP49-201ENST00000373006 MPZP25189 248 aa12.17□□□□□ -0.46
USP49-201ENST00000373006 SUPT4H1P63272 117 aaKnown RBP12.17□□□□□ -0.46
USP49-201ENST00000373006 C9orf50Q5SZB4 431 aa12.17□□□□□ -0.46
USP49-201ENST00000373006 TMEM244Q5VVB8 128 aa12.17□□□□□ -0.46
USP49-201ENST00000373006 OR2A2Q6IF42 318 aa12.17□□□□□ -0.46
USP49-201ENST00000373006 GALNTL5Q7Z4T8 443 aa12.17□□□□□ -0.46
USP49-201ENST00000373006 TSLPQ969D9 159 aa12.17□□□□□ -0.46
USP49-201ENST00000373006 SMIM8Q96KF7 97 aa12.17□□□□□ -0.46
USP49-201ENST00000373006 SLC5A7Q9GZV3 580 aa12.17□□□□□ -0.46
USP49-201ENST00000373006 SMCO4Q9NRQ5 59 aa12.17□□□□□ -0.46
USP49-201ENST00000373006 UFSP2Q9NUQ7 469 aa12.17□□□□□ -0.46
USP49-201ENST00000373006 GPR132Q9UNW8 380 aa12.17□□□□□ -0.46
USP49-201ENST00000373006 TMED7-TICAM2A0A0A6YYA0 188 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 LINC01565O15544 149 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 GP1BBP13224 206 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 BCKDHBP21953 392 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 ECH1Q13011 328 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 TSC22D1Q15714 1073 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 PLAC9Q5JTB6 97 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 C1orf140Q5VVS0 124 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 PRSS58Q8IYP2 241 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 TCTEX1D2Q8WW35 142 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 SLAMF9Q96A28 289 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 SOX7Q9BT81 388 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 ST6GALNAC5Q9BVH7 336 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 MED29Q9NX70 200 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 PLA2G2EQ9NZK7 142 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 WIF1Q9Y5W5 379 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 FLVCR1Q9Y5Y0 555 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 A0A0A6YYD4 124 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 C2orf72A6NCS6 295 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 METTL12A8MUP2 240 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 B4DGG1 531 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 PLPP3O14495 311 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 ZNF354AO60765 605 aaPredicted RBP12.16□□□□□ -0.46
USP49-201ENST00000373006 SFT2D2O95562 160 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 ISG15P05161 165 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 HOXC4P09017 264 aaPredicted RBP12.16□□□□□ -0.46
USP49-201ENST00000373006 OR8U9P0C7N5 309 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 IL12BP29460 328 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 CLEC9AQ6UXN8 241 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 SLC22A18ASQ8N1D0 253 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 SLC22A24Q8N4F4 322 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 OR8U1Q8NH10 309 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 HIST1H2BAQ96A08 127 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 KIRREL1Q96J84 757 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 JSRP1Q96MG2 331 aaPredicted RBP12.16□□□□□ -0.46
USP49-201ENST00000373006 TBL1XR1Q9BZK7 514 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 C5orf52A6NGY3 159 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 PRAMEF26H0Y7S4 382 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 DXOO77932 396 aaKnown RBP12.16□□□□□ -0.46
USP49-201ENST00000373006 KNG1P01042 644 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 TTRP02766 147 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 CSTBP04080 98 aaKnown RBP12.16□□□□□ -0.46
USP49-201ENST00000373006 FCGR3AP08637 254 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 CRABP1P29762 137 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 ZNF93P35789 620 aaPredicted RBP12.16□□□□□ -0.46
USP49-201ENST00000373006 TAS2R31P59538 309 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 UNQ6494/PRO21346Q6UXR6 183 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 COMMD2Q86X83 199 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 DTWD2Q8NBA8 298 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 SLC26A10Q8NG04 563 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 CD300LFQ8TDQ1 290 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 ZNF775Q96BV0 537 aaPredicted RBP12.16□□□□□ -0.46
USP49-201ENST00000373006 IP6K3Q96PC2 410 aa12.16□□□□□ -0.46
USP49-201ENST00000373006 RAD51DO75771 328 aa12.15□□□□□ -0.46
USP49-201ENST00000373006 SLC2A1P11166 492 aa12.15□□□□□ -0.46
USP49-201ENST00000373006 OR1D4P47884 311 aa12.15□□□□□ -0.46
USP49-201ENST00000373006 GLIPR1L1Q6UWM5 242 aa12.15□□□□□ -0.46
USP49-201ENST00000373006 FAM131CQ96AQ9 280 aa12.15□□□□□ -0.46
USP49-201ENST00000373006 EMC6Q9BV81 110 aa12.15□□□□□ -0.46
USP49-201ENST00000373006 UNC13CQ8NB66 2214 aa12.15□□□□□ -0.46
USP49-201ENST00000373006 RHPN2P1A8MT19 583 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms