RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 TLNRD1Q9H1K6 362 aa10.75□□□□□ -0.69
CLIP3-201ENST00000360535 SLC2A4RGQ9NR83 387 aa10.75□□□□□ -0.69
CLIP3-201ENST00000360535 ATPIF1Q9UII2 106 aa10.75□□□□□ -0.69
CLIP3-201ENST00000360535 IGHV1OR21-1A0A087WYE8 117 aa10.75□□□□□ -0.69
CLIP3-201ENST00000360535 A0A1B0GX78 115 aa10.75□□□□□ -0.69
CLIP3-201ENST00000360535 NUDT21O43809 227 aaKnown RBP10.75□□□□□ -0.69
CLIP3-201ENST00000360535 EFNA2O43921 213 aa10.75□□□□□ -0.69
CLIP3-201ENST00000360535 DUS4LO95620 317 aaKnown RBP10.75□□□□□ -0.69
CLIP3-201ENST00000360535 NFYBP25208 207 aa10.75□□□□□ -0.69
CLIP3-201ENST00000360535 ID4P47928 161 aa10.75□□□□□ -0.69
CLIP3-201ENST00000360535 MMP16P51512 607 aa10.75□□□□□ -0.69
CLIP3-201ENST00000360535 HNRNPKP61978 463 aaKnown RBP eCLIP10.75□□□□□ -0.69
CLIP3-201ENST00000360535 CLEC18BQ6UXF7 455 aa10.75□□□□□ -0.69
CLIP3-201ENST00000360535 BAP18Q8IXM2 172 aa10.75□□□□□ -0.69
CLIP3-201ENST00000360535 OR8B12Q8NGG6 310 aa10.75□□□□□ -0.69
CLIP3-201ENST00000360535 PIK3IP1Q96FE7 263 aa10.75□□□□□ -0.69
CLIP3-201ENST00000360535 FAM117AQ9C073 453 aa10.75□□□□□ -0.69
CLIP3-201ENST00000360535 EHFQ9NZC4 300 aa10.75□□□□□ -0.69
CLIP3-201ENST00000360535 ZNF814B7Z6K7 855 aa10.74□□□□□ -0.69
CLIP3-201ENST00000360535 G3V3Y1 287 aa10.74□□□□□ -0.69
CLIP3-201ENST00000360535 ISG15P05161 165 aa10.74□□□□□ -0.69
CLIP3-201ENST00000360535 ADCYAP1P18509 176 aa10.74□□□□□ -0.69
CLIP3-201ENST00000360535 LAP3P28838 519 aa10.74□□□□□ -0.69
CLIP3-201ENST00000360535 RAB32Q13637 225 aa10.74□□□□□ -0.69
CLIP3-201ENST00000360535 TMEM176BQ3YBM2 270 aaPredicted RBP10.74□□□□□ -0.69
CLIP3-201ENST00000360535 CCDC157Q569K6 752 aa10.74□□□□□ -0.69
CLIP3-201ENST00000360535 C1QL2Q7Z5L3 287 aa10.74□□□□□ -0.69
CLIP3-201ENST00000360535 EIF4E3Q8N5X7 224 aaKnown RBP10.74□□□□□ -0.69
CLIP3-201ENST00000360535 SLC38A9Q8NBW4 561 aa10.74□□□□□ -0.69
CLIP3-201ENST00000360535 OR10G3Q8NGC4 313 aa10.74□□□□□ -0.69
CLIP3-201ENST00000360535 OR10C1Q96KK4 312 aa10.74□□□□□ -0.69
CLIP3-201ENST00000360535 C5orf66Q9H5L9 145 aa10.74□□□□□ -0.69
CLIP3-201ENST00000360535 IGHV3-15A0A0B4J1V0 119 aa10.74□□□□□ -0.69
CLIP3-201ENST00000360535 A0A1B0GV50 99 aa10.74□□□□□ -0.69
CLIP3-201ENST00000360535 SHISA7A6NL88 538 aa10.74□□□□□ -0.69
CLIP3-201ENST00000360535 BPNT1O95861 308 aa10.74□□□□□ -0.69
CLIP3-201ENST00000360535 RCC1P18754 421 aaPredicted RBP10.74□□□□□ -0.69
CLIP3-201ENST00000360535 RBM39Q14498 530 aaKnown RBP10.74□□□□□ -0.69
CLIP3-201ENST00000360535 ZNF345Q14585 488 aa10.74□□□□□ -0.69
CLIP3-201ENST00000360535 TOMM20Q15388 145 aa10.74□□□□□ -0.69
CLIP3-201ENST00000360535 PLXDC1Q8IUK5 500 aa10.74□□□□□ -0.69
CLIP3-201ENST00000360535 ZDHHC22Q8N966 263 aa10.74□□□□□ -0.69
CLIP3-201ENST00000360535 PIGTQ969N2 578 aa10.74□□□□□ -0.69
CLIP3-201ENST00000360535 RNF126Q9BV68 326 aa10.74□□□□□ -0.69
CLIP3-201ENST00000360535 SDHAF3Q9NRP4 125 aa10.74□□□□□ -0.69
CLIP3-201ENST00000360535 ZNF629Q9UEG4 869 aaPredicted RBP10.74□□□□□ -0.69
CLIP3-201ENST00000360535 LHFPL6Q9Y693 200 aa10.74□□□□□ -0.69
CLIP3-201ENST00000360535 DUX1O43812 170 aa10.74□□□□□ -0.69
CLIP3-201ENST00000360535 MELTFP08582 738 aa10.74□□□□□ -0.69
CLIP3-201ENST00000360535 RAB6AP20340 208 aa10.74□□□□□ -0.69
CLIP3-201ENST00000360535 GABRR1P24046 479 aa10.74□□□□□ -0.69
CLIP3-201ENST00000360535 BLVRBP30043 206 aaPredicted RBP10.74□□□□□ -0.69
CLIP3-201ENST00000360535 CX3CR1P49238 355 aa10.74□□□□□ -0.69
CLIP3-201ENST00000360535 ANKRD55Q3KP44 614 aa10.74□□□□□ -0.69
CLIP3-201ENST00000360535 DRAM2Q6UX65 266 aa10.74□□□□□ -0.69
CLIP3-201ENST00000360535 ARL11Q969Q4 196 aa10.74□□□□□ -0.69
CLIP3-201ENST00000360535 JSRP1Q96MG2 331 aaPredicted RBP10.74□□□□□ -0.69
CLIP3-201ENST00000360535 CYB5R1Q9UHQ9 305 aa10.74□□□□□ -0.69
CLIP3-201ENST00000360535 A0A0A6YYH2 397 aa10.73□□□□□ -0.69
CLIP3-201ENST00000360535 A6NJ64 397 aa10.73□□□□□ -0.69
CLIP3-201ENST00000360535 LMO7DNF2Z398 122 aa10.73□□□□□ -0.69
CLIP3-201ENST00000360535 STMND1H3BQB6 276 aa10.73□□□□□ -0.69
CLIP3-201ENST00000360535 CDC14BO60729 498 aa10.73□□□□□ -0.69
CLIP3-201ENST00000360535 QDPRP09417 244 aa10.73□□□□□ -0.69
CLIP3-201ENST00000360535 CD27P26842 260 aa10.73□□□□□ -0.69
CLIP3-201ENST00000360535 NPBWR1P48145 328 aa10.73□□□□□ -0.69
CLIP3-201ENST00000360535 TMEM50BP56557 158 aa10.73□□□□□ -0.69
CLIP3-201ENST00000360535 GABREP78334 506 aa10.73□□□□□ -0.69
CLIP3-201ENST00000360535 SCRN3Q0VDG4 424 aa10.73□□□□□ -0.69
CLIP3-201ENST00000360535 CDCP2Q5VXM1 449 aa10.73□□□□□ -0.69
CLIP3-201ENST00000360535 BATF2Q8N1L9 274 aa10.73□□□□□ -0.69
CLIP3-201ENST00000360535 SVBPQ8N300 66 aa10.73□□□□□ -0.69
CLIP3-201ENST00000360535 MFSD8Q8NHS3 518 aa10.73□□□□□ -0.69
CLIP3-201ENST00000360535 NUBPLQ8TB37 319 aa10.73□□□□□ -0.69
CLIP3-201ENST00000360535 PGAM5Q96HS1 289 aa10.73□□□□□ -0.69
CLIP3-201ENST00000360535 CNTNAP3BQ96NU0 1288 aa10.73□□□□□ -0.69
CLIP3-201ENST00000360535 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.73□□□□□ -0.69
CLIP3-201ENST00000360535 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.73□□□□□ -0.69
CLIP3-201ENST00000360535 LOC390937A0A1W2PQ73 354 aa10.73□□□□□ -0.69
CLIP3-201ENST00000360535 LIPT2A6NK58 231 aa10.73□□□□□ -0.69
CLIP3-201ENST00000360535 ZNF726A6NNF4 738 aa10.73□□□□□ -0.69
CLIP3-201ENST00000360535 OR2J2O76002 312 aa10.73□□□□□ -0.69
CLIP3-201ENST00000360535 TIAF1O95411 115 aa10.73□□□□□ -0.69
CLIP3-201ENST00000360535 SNU13P55769 128 aaKnown RBP10.73□□□□□ -0.69
CLIP3-201ENST00000360535 TMEM128Q5BJH2 165 aa10.73□□□□□ -0.69
CLIP3-201ENST00000360535 S100A13Q99584 98 aa10.73□□□□□ -0.69
CLIP3-201ENST00000360535 CDC6Q99741 560 aa10.73□□□□□ -0.69
CLIP3-201ENST00000360535 PI4KAP42356 2102 aa10.73□□□□□ -0.69
CLIP3-201ENST00000360535 MED19A0JLT2 244 aaPredicted RBP10.73□□□□□ -0.69
CLIP3-201ENST00000360535 ANKUB1A6NFN9 424 aa10.73□□□□□ -0.69
CLIP3-201ENST00000360535 TTLL8A6PVC2 850 aa10.73□□□□□ -0.69
CLIP3-201ENST00000360535 HIST1H1DP16402 221 aaKnown RBP10.73□□□□□ -0.69
CLIP3-201ENST00000360535 ZNF43P17038 809 aa10.73□□□□□ -0.69
CLIP3-201ENST00000360535 BRICD5Q6PL45 260 aa10.73□□□□□ -0.69
CLIP3-201ENST00000360535 PGAP1Q75T13 922 aa10.73□□□□□ -0.69
CLIP3-201ENST00000360535 RNF141Q8WVD5 230 aa10.73□□□□□ -0.69
CLIP3-201ENST00000360535 TMEM230Q96A57 120 aa10.73□□□□□ -0.69
CLIP3-201ENST00000360535 HDHD3Q9BSH5 251 aaPredicted RBP10.73□□□□□ -0.69
CLIP3-201ENST00000360535 TNFSF12-TNFSF13A0A0A6YY99 330 aa10.72□□□□□ -0.69
CLIP3-201ENST00000360535 E9PLN8 166 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms