RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 TMEM33P57088 247 aa4.31□□□□□ -1.72
CSMD3-203ENST00000343508 CA13Q8N1Q1 262 aa4.31□□□□□ -1.72
CSMD3-203ENST00000343508 KCNIP2Q9NS61 270 aa4.31□□□□□ -1.72
CSMD3-203ENST00000343508 CCDC85CA6NKD9 419 aa4.31□□□□□ -1.72
CSMD3-203ENST00000343508 TMEM31Q5JXX7 168 aa4.31□□□□□ -1.72
CSMD3-203ENST00000343508 KIAA0895LQ68EN5 471 aa4.31□□□□□ -1.72
CSMD3-203ENST00000343508 FAM199XQ6PEV8 388 aaPredicted RBP4.31□□□□□ -1.72
CSMD3-203ENST00000343508 MOB3CQ70IA8 216 aa4.31□□□□□ -1.72
CSMD3-203ENST00000343508 TXN2Q99757 166 aa4.31□□□□□ -1.72
CSMD3-203ENST00000343508 CFDP00746 253 aaPredicted RBP4.31□□□□□ -1.72
CSMD3-203ENST00000343508 MSR1P21757 451 aa4.31□□□□□ -1.72
CSMD3-203ENST00000343508 H2BFSP57053 126 aa4.31□□□□□ -1.72
CSMD3-203ENST00000343508 PCK2Q16822 640 aa4.31□□□□□ -1.72
CSMD3-203ENST00000343508 ZNF542PQ5EBM4 170 aa4.31□□□□□ -1.72
CSMD3-203ENST00000343508 POC1BQ8TC44 478 aa4.31□□□□□ -1.72
CSMD3-203ENST00000343508 ARV1Q9H2C2 271 aa4.31□□□□□ -1.72
CSMD3-203ENST00000343508 OR51I2Q9H344 312 aa4.31□□□□□ -1.72
CSMD3-203ENST00000343508 HS3ST3A1Q9Y663 406 aa4.31□□□□□ -1.72
CSMD3-203ENST00000343508 TRBV11-1A0A0K0K1C0 115 aa4.31□□□□□ -1.72
CSMD3-203ENST00000343508 TLCD2A6NGC4 264 aa4.31□□□□□ -1.72
CSMD3-203ENST00000343508 A8MXK9 166 aa4.31□□□□□ -1.72
CSMD3-203ENST00000343508 SUMO1P63165 101 aaKnown RBP4.31□□□□□ -1.72
CSMD3-203ENST00000343508 MRPS21P82921 87 aaKnown RBP4.31□□□□□ -1.72
CSMD3-203ENST00000343508 SLC25A43Q8WUT9 341 aaPredicted RBP4.31□□□□□ -1.72
CSMD3-203ENST00000343508 BCL7CQ8WUZ0 217 aaPredicted RBP4.31□□□□□ -1.72
CSMD3-203ENST00000343508 SHDQ96IW2 340 aa4.31□□□□□ -1.72
CSMD3-203ENST00000343508 VAMP8Q9BV40 100 aa4.31□□□□□ -1.72
CSMD3-203ENST00000343508 CACFD1Q9UGQ2 172 aa4.31□□□□□ -1.72
CSMD3-203ENST00000343508 CEBPZOSA8MTT3 80 aa4.31□□□□□ -1.72
CSMD3-203ENST00000343508 H7BYZ3 331 aa4.31□□□□□ -1.72
CSMD3-203ENST00000343508 PLRG1O43660 514 aaKnown RBP4.31□□□□□ -1.72
CSMD3-203ENST00000343508 GJA4P35212 333 aa4.31□□□□□ -1.72
CSMD3-203ENST00000343508 FAM3AP98173 230 aa4.31□□□□□ -1.72
CSMD3-203ENST00000343508 RAB32Q13637 225 aa4.31□□□□□ -1.72
CSMD3-203ENST00000343508 CPEB4Q17RY0 729 aaKnown RBP eCLIP4.31□□□□□ -1.72
CSMD3-203ENST00000343508 AADACL3Q5VUY0 350 aa4.31□□□□□ -1.72
CSMD3-203ENST00000343508 CDC20BQ86Y33 519 aa4.31□□□□□ -1.72
CSMD3-203ENST00000343508 RTN4IP1Q8WWV3 396 aaPredicted RBP4.31□□□□□ -1.72
CSMD3-203ENST00000343508 ATOH1Q92858 354 aaPredicted RBP4.31□□□□□ -1.72
CSMD3-203ENST00000343508 MFRPQ9BY79 579 aa4.31□□□□□ -1.72
CSMD3-203ENST00000343508 SLC17A4Q9Y2C5 497 aa4.31□□□□□ -1.72
CSMD3-203ENST00000343508 CKAP5Q14008 2032 aa4.31□□□□□ -1.72
CSMD3-203ENST00000343508 CD160O95971 181 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 CST2P09228 141 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 AWAT1Q58HT5 328 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 SEZ6L2Q6UXD5 910 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 TFAP2EQ6VUC0 442 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 THSD4Q6ZMP0 1018 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 COX14Q96I36 57 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 SMIM7Q9BQ49 75 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 RNF186Q9NXI6 227 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 ALKBH4Q9NXW9 302 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 THAP10Q9P2Z0 257 aaPredicted RBP4.3□□□□□ -1.72
CSMD3-203ENST00000343508 MBPP02686 304 aaPredicted RBP4.3□□□□□ -1.72
CSMD3-203ENST00000343508 SEC11BP0C7V7 166 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 OR5H8P0DN80 308 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 CD200P41217 278 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 PNLIPRP2P54317 469 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 MZT1Q08AG7 82 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 TMEM164Q5U3C3 297 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 SSX7Q7RTT5 188 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 MRGPREQ86SM8 312 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 NXPE3Q969Y0 559 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 PRAMEF4O60810 478 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 OR2A4O95047 310 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 C4orf17Q53FE4 359 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 SIGLECL1Q8N7X8 197 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 OR52N4Q8NGI2 321 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 OR2A7Q96R45 310 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 B2MP61769 119 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 DEFB103AP81534 67 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 LAMTOR1Q6IAA8 161 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 OR8G2PQ6IF36 304 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 GPR84Q9NQS5 396 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 ZNF230Q9UIE0 474 aaPredicted RBP4.3□□□□□ -1.72
CSMD3-203ENST00000343508 TP53BP1Q12888 1972 aaPredicted RBP4.3□□□□□ -1.72
CSMD3-203ENST00000343508 PRRT4C9JH25 899 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 PHOX2AO14813 284 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 CTSVO60911 334 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 ICOSLGO75144 302 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 OPN1MWP04001 364 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 OPN1MW2P0DN77 364 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 OPN1MW3P0DN78 364 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 KITLGP21583 273 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 THBS3P49746 956 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 FZD2Q14332 565 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 VN1R2Q8NFZ6 395 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 CNTD2Q9H8S5 307 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 WSB1Q9Y6I7 421 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 CCDC163A0A0D9SF12 145 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 RBFOX3A6NFN3 312 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 EIF3GO75821 320 aaKnown RBP eCLIP4.3□□□□□ -1.72
CSMD3-203ENST00000343508 VAMP5O95183 116 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 CLDN1O95832 211 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 PI3P19957 117 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 GALR1P47211 349 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 ADPRHP54922 357 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 ASTLQ6HA08 431 aaPredicted RBP4.3□□□□□ -1.72
CSMD3-203ENST00000343508 PHOSPHO2Q8TCD6 241 aa4.3□□□□□ -1.72
CSMD3-203ENST00000343508 GPA33Q99795 319 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms