RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 ZIC2O95409 532 aaPredicted RBP10.4□□□□□ -0.75
VPS39-201ENST00000318006 OR5H8P0DN80 308 aa10.4□□□□□ -0.75
VPS39-201ENST00000318006 MLF1P58340 268 aa10.4□□□□□ -0.75
VPS39-201ENST00000318006 TFAP2EQ6VUC0 442 aa10.4□□□□□ -0.75
VPS39-201ENST00000318006 H1FNTQ75WM6 255 aaPredicted RBP10.4□□□□□ -0.75
VPS39-201ENST00000318006 GRINAQ7Z429 371 aa10.4□□□□□ -0.75
VPS39-201ENST00000318006 OR4N2Q8NGD1 307 aa10.4□□□□□ -0.75
VPS39-201ENST00000318006 ZNF596Q8TC21 504 aa10.4□□□□□ -0.75
VPS39-201ENST00000318006 OR51E1Q8TCB6 317 aa10.4□□□□□ -0.75
VPS39-201ENST00000318006 GNG12Q9UBI6 72 aa10.4□□□□□ -0.75
VPS39-201ENST00000318006 MRPL33O75394 65 aaKnown RBP10.39□□□□□ -0.75
VPS39-201ENST00000318006 CXCL3P19876 107 aa10.39□□□□□ -0.75
VPS39-201ENST00000318006 SMAD4Q13485 552 aaKnown RBP10.39□□□□□ -0.75
VPS39-201ENST00000318006 KCNAB1Q14722 419 aa10.39□□□□□ -0.75
VPS39-201ENST00000318006 LGALSLQ3ZCW2 172 aaPredicted RBP10.39□□□□□ -0.75
VPS39-201ENST00000318006 SPANXN5Q5MJ07 72 aa10.39□□□□□ -0.75
VPS39-201ENST00000318006 CA13Q8N1Q1 262 aa10.39□□□□□ -0.75
VPS39-201ENST00000318006 RTN4IP1Q8WWV3 396 aaPredicted RBP10.39□□□□□ -0.75
VPS39-201ENST00000318006 EID2BQ96D98 161 aa10.39□□□□□ -0.75
VPS39-201ENST00000318006 SAT2Q96F10 170 aaPredicted RBP10.39□□□□□ -0.75
VPS39-201ENST00000318006 CNRIP1Q96F85 164 aaPredicted RBP10.39□□□□□ -0.75
VPS39-201ENST00000318006 FAM210BQ96KR6 192 aa10.39□□□□□ -0.75
VPS39-201ENST00000318006 MRGPRX3Q96LB0 322 aa10.39□□□□□ -0.75
VPS39-201ENST00000318006 RSRP1Q9BUV0 290 aa10.39□□□□□ -0.75
VPS39-201ENST00000318006 CTDSP1Q9GZU7 261 aa10.39□□□□□ -0.75
VPS39-201ENST00000318006 MTCH1Q9NZJ7 389 aa10.39□□□□□ -0.75
VPS39-201ENST00000318006 ELF5Q9UKW6 265 aaPredicted RBP10.39□□□□□ -0.75
VPS39-201ENST00000318006 SLC22A13Q9Y226 551 aa10.39□□□□□ -0.75
VPS39-201ENST00000318006 C2orf72A6NCS6 295 aa10.39□□□□□ -0.75
VPS39-201ENST00000318006 IGHA2P01877 340 aa10.39□□□□□ -0.75
VPS39-201ENST00000318006 CAPZBP47756 277 aa10.39□□□□□ -0.75
VPS39-201ENST00000318006 C21orf62-AS1Q17RA5 79 aa10.39□□□□□ -0.75
VPS39-201ENST00000318006 NCMAPQ5T1S8 102 aa10.39□□□□□ -0.75
VPS39-201ENST00000318006 KDF1Q8NAX2 398 aaPredicted RBP10.39□□□□□ -0.75
VPS39-201ENST00000318006 TP53I13Q8NBR0 393 aaPredicted RBP10.39□□□□□ -0.75
VPS39-201ENST00000318006 GOT1L1Q8NHS2 421 aaPredicted RBP10.39□□□□□ -0.75
VPS39-201ENST00000318006 LIPHQ8WWY8 451 aa10.39□□□□□ -0.75
VPS39-201ENST00000318006 TMEM37Q8WXS4 190 aa10.39□□□□□ -0.75
VPS39-201ENST00000318006 ATOH1Q92858 354 aaPredicted RBP10.39□□□□□ -0.75
VPS39-201ENST00000318006 SIGLEC11Q96RL6 698 aa10.39□□□□□ -0.75
VPS39-201ENST00000318006 MS4A7Q9GZW8 240 aaPredicted RBP10.39□□□□□ -0.75
VPS39-201ENST00000318006 GPR173Q9NS66 373 aa10.39□□□□□ -0.75
VPS39-201ENST00000318006 ZNF346Q9UL40 294 aaKnown RBP10.39□□□□□ -0.75
VPS39-201ENST00000318006 DOCK5Q9H7D0 1870 aa10.39□□□□□ -0.75
VPS39-201ENST00000318006 PLA2G10O15496 165 aa10.39□□□□□ -0.75
VPS39-201ENST00000318006 MPC2O95563 127 aa10.39□□□□□ -0.75
VPS39-201ENST00000318006 COX5AP20674 150 aa10.39□□□□□ -0.75
VPS39-201ENST00000318006 HMGA2P52926 109 aa10.39□□□□□ -0.75
VPS39-201ENST00000318006 TMEM183BQ1AE95 376 aa10.39□□□□□ -0.75
VPS39-201ENST00000318006 RBMXL3Q8N7X1 1067 aaKnown RBP10.39□□□□□ -0.75
VPS39-201ENST00000318006 OR5M9Q8NGP3 310 aa10.39□□□□□ -0.75
VPS39-201ENST00000318006 OR5B3Q8NH48 314 aa10.39□□□□□ -0.75
VPS39-201ENST00000318006 OR10J5Q8NHC4 309 aa10.39□□□□□ -0.75
VPS39-201ENST00000318006 SLAMF6Q96DU3 332 aa10.39□□□□□ -0.75
VPS39-201ENST00000318006 ZNF426Q9BUY5 554 aa10.39□□□□□ -0.75
VPS39-201ENST00000318006 SEC11CQ9BY50 192 aa10.39□□□□□ -0.75
VPS39-201ENST00000318006 R4GMQ9 66 aa10.39□□□□□ -0.75
VPS39-201ENST00000318006 PTBP3O95758 552 aaKnown RBP10.39□□□□□ -0.75
VPS39-201ENST00000318006 CISD3P0C7P0 127 aa10.39□□□□□ -0.75
VPS39-201ENST00000318006 ABCD3P28288 659 aa10.39□□□□□ -0.75
VPS39-201ENST00000318006 PIGPP57054 158 aa10.39□□□□□ -0.75
VPS39-201ENST00000318006 FAM219BQ5XKK7 198 aa10.39□□□□□ -0.75
VPS39-201ENST00000318006 TRILQ7L0X0 811 aa10.39□□□□□ -0.75
VPS39-201ENST00000318006 AAED1Q7RTV5 226 aa10.39□□□□□ -0.75
VPS39-201ENST00000318006 ZNF775Q96BV0 537 aaPredicted RBP10.39□□□□□ -0.75
VPS39-201ENST00000318006 RAB18Q9NP72 206 aa10.39□□□□□ -0.75
VPS39-201ENST00000318006 OBP2BQ9NPH6 170 aa10.39□□□□□ -0.75
VPS39-201ENST00000318006 PRAMEF25A6NGN4 478 aa10.38□□□□□ -0.75
VPS39-201ENST00000318006 G3V3Y1 287 aa10.38□□□□□ -0.75
VPS39-201ENST00000318006 CD46P15529 392 aa10.38□□□□□ -0.75
VPS39-201ENST00000318006 ACKR1Q16570 336 aa10.38□□□□□ -0.75
VPS39-201ENST00000318006 PCK2Q16822 640 aa10.38□□□□□ -0.75
VPS39-201ENST00000318006 C1orf53Q5VUE5 145 aa10.38□□□□□ -0.75
VPS39-201ENST00000318006 TMEM215Q68D42 235 aa10.38□□□□□ -0.75
VPS39-201ENST00000318006 BCORP1Q8N888 145 aa10.38□□□□□ -0.75
VPS39-201ENST00000318006 TECTBQ96PL2 329 aa10.38□□□□□ -0.75
VPS39-201ENST00000318006 IGHV3-20A0A0C4DH32 117 aa10.38□□□□□ -0.75
VPS39-201ENST00000318006 A0A1W2PPH5 198 aa10.38□□□□□ -0.75
VPS39-201ENST00000318006 H0YIG0 161 aa10.38□□□□□ -0.75
VPS39-201ENST00000318006 EIF1BO60739 113 aaKnown RBP10.38□□□□□ -0.75
VPS39-201ENST00000318006 CRYBA1P05813 215 aa10.38□□□□□ -0.75
VPS39-201ENST00000318006 INHBBP09529 407 aa10.38□□□□□ -0.75
VPS39-201ENST00000318006 PTHLHP12272 177 aa10.38□□□□□ -0.75
VPS39-201ENST00000318006 PPP1CBP62140 327 aa10.38□□□□□ -0.75
VPS39-201ENST00000318006 RUNX2Q13950 521 aa10.38□□□□□ -0.75
VPS39-201ENST00000318006 INSL4Q14641 139 aa10.38□□□□□ -0.75
VPS39-201ENST00000318006 PNLIPRP3Q17RR3 467 aa10.38□□□□□ -0.75
VPS39-201ENST00000318006 ARHGEF39Q8N4T4 335 aa10.38□□□□□ -0.75
VPS39-201ENST00000318006 OR4S1Q8NGB4 309 aa10.38□□□□□ -0.75
VPS39-201ENST00000318006 CCDC74AQ96AQ1 378 aa10.38□□□□□ -0.75
VPS39-201ENST00000318006 GPR137Q96N19 417 aa10.38□□□□□ -0.75
VPS39-201ENST00000318006 CTSFQ9UBX1 484 aa10.38□□□□□ -0.75
VPS39-201ENST00000318006 RCL1Q9Y2P8 373 aaKnown RBP10.38□□□□□ -0.75
VPS39-201ENST00000318006 XKRY2A2RUG3 117 aa10.38□□□□□ -0.75
VPS39-201ENST00000318006 PPICP45877 212 aa10.38□□□□□ -0.75
VPS39-201ENST00000318006 GPR32P1Q8NGA4 272 aa10.38□□□□□ -0.75
VPS39-201ENST00000318006 UTP23Q9BRU9 249 aaKnown RBP10.38□□□□□ -0.75
VPS39-201ENST00000318006 MIXL1Q9H2W2 232 aa10.38□□□□□ -0.75
VPS39-201ENST00000318006 KCND3Q9UK17 655 aa10.38□□□□□ -0.75
VPS39-201ENST00000318006 OR10J4P0C629 311 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms